EsuBft100_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft100_10a-0001
Unique NameEsuBft100_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:198130..199764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft100_10
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length113
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft100_10aEsuBft100_10aEctocarpus subulatus male Bft15bgeneScaffold_441 198130..199764 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_10a-0001-exonagat-exon-35315Ectocarpus subulatus male Bft15bexonScaffold_441 198130..198925 -
EsuBft100_10a-0001-exonEsuBft100_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 199423..199764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_10a-0001-cdsEsuBft100_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 198130..198925 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_10a-0001-exonagat-five_prime_utr-51Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_441 199626..199764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_10a-0001EsuBft100_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 198130..199625 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft100_10a-0001 ID=EsuBft100_10a-0001|Name=EsuBft100_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1138bp|location=Sequence derived from alignment at Scaffold_441:198130..199764- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAAGAGAGCCAGTGCACGGCGAGGCAGGAGAGGGAGAGCATCGACCAGC
GGGCAGGACGTCAACCTCCAATTGTGATCCGGAACCAGGACGTCGATAAA
GGCGCTTCAATATATCATGTTCCCGTGGTTATTCTCAACATGGCAGCCGT
CGCAACAGCAGCTGCCATCAGCATGTGCTTTATAGAAGCGGAGGAACACC
AGCAAGTGCGGTGCAACTCATCTGCGGTCTGCTCTGGAAGCCAGAGGAAG
CCCGACGCTTTGGCCGCCGCGAAATGGTTGCTGGCGGCGTCCTTATGGGC
CCATCGAGTGCTTTCGCGTCGGCGATGCGAGCGAGTGGACTCGGCAGTCG
CTCTCCATCGCAACGCCGCCGCCAACAACCATGCCCTCTCCCGCACCGCC
CCCCGTCGCATATTTTCAACGCCGCTTCCTGCCACGGTACCACCGCCCGC
GGCGTCGCCCCCGCCGTTGCCCCCGCGGGCCAGCCGCCTCCTGGCGCGTC
CGTCACCGTTGCCATTGTGCTCTCCGGGCCAGCCACCGCCGCGGCCGTAC
CCTGCGATGCCCCCGATCACGGCACACGCTATTCGACAGCTTGGCCCAGG
TAAGAAGACAGAGGGTTTGCAAGACTCGCGGCTGCATGGCCACACGAGAT
CGGACGCTAGGCACAGCACGGGCTTTATCTCGACGTTGGGCAGGAACACT
CGGGTGTCTACGCTGGAGGCTCGGAGCGCTGTGGATGGGGAGCGCAAGGA
GCTGGGGGGAGCAGCGGCGGCCGAAGAGAAGGCGGGATTTATTGCAGCAG
TGGACCCGGGGGGAGTGGGAGGAGCAGACACACCATATCCTTTTGCAACG
CTCCTCGCGAACCGGGAAGTTATGGACGCCACGCTGCACGACCAGCGACC
GCCGGATCAACTCCCTGAACTCCCAGGCAACGAGGCCAGCGACCTTCGTT
TTCCCAAGCGCTTCAACAAGGCCATGGCTTCGGAGCGTCGGCACCTCTGG
AGCGATTCCATGATTTTTTTTTTTTACGGGTTGTTGGATGCGGACATTCA
CTTCGGCAAAAAAGCAATCAGTGCAACACACGATCAATGCCAAAGGTGGG
TAACGATTGGACGGAAGATGGATTTGAAGGCCCACTAA
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protein sequence of EsuBft100_10a-0001

>EsuBft100_10 ID=EsuBft100_10|Name=EsuBft100_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=332bp
MAAVATAAAISMCFIEAEEHQQVRCNSSAVCSGSQRKPDALAAAKWLLAA
SLWAHRVLSRRRCERVDSAVALHRNAAANNHALSRTAPRRIFSTPLPATV
PPPAASPPPLPPRASRLLARPSPLPLCSPGQPPPRPYPAMPPITAHAIRQ
LGPGKKTEGLQDSRLHGHTRSDARHSTGFISTLGRNTRVSTLEARSAVDG
ERKELGGAAAAEEKAGFIAAVDPGGVGGADTPYPFATLLANREVMDATLH
DQRPPDQLPELPGNEASDLRFPKRFNKAMASERRHLWSDSMIFFFYGLLD
ADIHFGKKAISATHDQCQRWVTIGRKMDLKAH
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mRNA from alignment at Scaffold_441:198130..199764-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft100_10a-0001 ID=EsuBft100_10a-0001|Name=EsuBft100_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1635bp|location=Sequence derived from alignment at Scaffold_441:198130..199764- (Ectocarpus subulatus male Bft15b)
TGAAGAGAGCCAGTGCACGGCGAGGCAGGAGAGGGAGAGCATCGACCAGC
GGGCAGGACGTCAACCTCCAATTGTGATCCGGAACCAGGACGTCGATAAA
GGCGCTTCAATATATCATGTTCCCGTGGTTATTCTCAACATGGCAGCCGT
CGCAACAGCAGCTGCCATCAGCATGTGCTTTATAGAAGCGGAGGAACACC
AGCAAGTGCGGTGCAACTCATCTGCGGTCTGCTCTGGAAGCCAGAGGAAG
CCCGACGCTTTGGCCGCCGCGAAATGGTTGCTGGCGGCGTCCTTATGGGC
CCATCGAGTGCTTTCGCGTCGGCGATGCGAGCGAGTGGACTCGTGATACT
CTTCGGCGTTTCTGCACTCCGCCTGATGTTCCGCATTTTTTGAGTGCCAT
TTGACGCATCATGAAGCCATGTGTCTTCAACGTCGACTTCTCTTCCATGC
CCGGCCTTACAAGCGCGGTGACGCCTTTTGACTGGGATGGATGAAGTGGC
TGCTGACGCGATCAACCAATCGGAGACGAACGCAGTGGGGGGAGCAAGCG
CCGTCGTGGGTGCTGCCTTCTTGCAGCCTGGCTACATTCGCGAGAAGCGC
CGTACAAAGCTCGATGACCAGGCCAGATTCGCGGCGGCAAACGTTCGAGC
GGTATCGTGAAAATCCTGAATGCTCAGCCCGGCCGCGTTGCCTACACCAA
CAACATGGCGTGGGTGGCGACGGCGCCAGCCGGTGAGGGAGGTTCTTCTG
GTATCCCCGCTATGCCGACATCTCCCACGCCCACGAGCCGGTCATCTCGG
ACAATTTTAGTTCAGCATCTTCGCCGTCGCCCTCTTTAGGGCAGTCGCTC
TCCATCGCAACGCCGCCGCCAACAACCATGCCCTCTCCCGCACCGCCCCC
CGTCGCATATTTTCAACGCCGCTTCCTGCCACGGTACCACCGCCCGCGGC
GTCGCCCCCGCCGTTGCCCCCGCGGGCCAGCCGCCTCCTGGCGCGTCCGT
CACCGTTGCCATTGTGCTCTCCGGGCCAGCCACCGCCGCGGCCGTACCCT
GCGATGCCCCCGATCACGGCACACGCTATTCGACAGCTTGGCCCAGGTAA
GAAGACAGAGGGTTTGCAAGACTCGCGGCTGCATGGCCACACGAGATCGG
ACGCTAGGCACAGCACGGGCTTTATCTCGACGTTGGGCAGGAACACTCGG
GTGTCTACGCTGGAGGCTCGGAGCGCTGTGGATGGGGAGCGCAAGGAGCT
GGGGGGAGCAGCGGCGGCCGAAGAGAAGGCGGGATTTATTGCAGCAGTGG
ACCCGGGGGGAGTGGGAGGAGCAGACACACCATATCCTTTTGCAACGCTC
CTCGCGAACCGGGAAGTTATGGACGCCACGCTGCACGACCAGCGACCGCC
GGATCAACTCCCTGAACTCCCAGGCAACGAGGCCAGCGACCTTCGTTTTC
CCAAGCGCTTCAACAAGGCCATGGCTTCGGAGCGTCGGCACCTCTGGAGC
GATTCCATGATTTTTTTTTTTTACGGGTTGTTGGATGCGGACATTCACTT
CGGCAAAAAAGCAATCAGTGCAACACACGATCAATGCCAAAGGTGGGTAA
CGATTGGACGGAAGATGGATTTGAAGGCCCACTAA
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Coding sequence (CDS) from alignment at Scaffold_441:198130..199764-

>EsuBft100_10a-0001 ID=EsuBft100_10a-0001|Name=EsuBft100_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=999bp|location=Sequence derived from alignment at Scaffold_441:198130..199764- (Ectocarpus subulatus male Bft15b)
ATGGCAGCCGTCGCAACAGCAGCTGCCATCAGCATGTGCTTTATAGAAGC
GGAGGAACACCAGCAAGTGCGGTGCAACTCATCTGCGGTCTGCTCTGGAA
GCCAGAGGAAGCCCGACGCTTTGGCCGCCGCGAAATGGTTGCTGGCGGCG
TCCTTATGGGCCCATCGAGTGCTTTCGCGTCGGCGATGCGAGCGAGTGGA
CTCGGCAGTCGCTCTCCATCGCAACGCCGCCGCCAACAACCATGCCCTCT
CCCGCACCGCCCCCCGTCGCATATTTTCAACGCCGCTTCCTGCCACGGTA
CCACCGCCCGCGGCGTCGCCCCCGCCGTTGCCCCCGCGGGCCAGCCGCCT
CCTGGCGCGTCCGTCACCGTTGCCATTGTGCTCTCCGGGCCAGCCACCGC
CGCGGCCGTACCCTGCGATGCCCCCGATCACGGCACACGCTATTCGACAG
CTTGGCCCAGGTAAGAAGACAGAGGGTTTGCAAGACTCGCGGCTGCATGG
CCACACGAGATCGGACGCTAGGCACAGCACGGGCTTTATCTCGACGTTGG
GCAGGAACACTCGGGTGTCTACGCTGGAGGCTCGGAGCGCTGTGGATGGG
GAGCGCAAGGAGCTGGGGGGAGCAGCGGCGGCCGAAGAGAAGGCGGGATT
TATTGCAGCAGTGGACCCGGGGGGAGTGGGAGGAGCAGACACACCATATC
CTTTTGCAACGCTCCTCGCGAACCGGGAAGTTATGGACGCCACGCTGCAC
GACCAGCGACCGCCGGATCAACTCCCTGAACTCCCAGGCAACGAGGCCAG
CGACCTTCGTTTTCCCAAGCGCTTCAACAAGGCCATGGCTTCGGAGCGTC
GGCACCTCTGGAGCGATTCCATGATTTTTTTTTTTTACGGGTTGTTGGAT
GCGGACATTCACTTCGGCAAAAAAGCAATCAGTGCAACACACGATCAATG
CCAAAGGTGGGTAACGATTGGACGGAAGATGGATTTGAAGGCCCACTAA
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