EsuBft1009_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1009_8a-0001
Unique Name	EsuBft1009_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:123361..128202 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1009_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	138
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_8a	EsuBft1009_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 123361..128202 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_8a-0001	EsuBft1009_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 123506..126420 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_8a-0001-exon	EsuBft1009_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 123361..123584 +
EsuBft1009_8a-0001-exon	agat-exon-87404	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 126371..126562 +
EsuBft1009_8a-0001-exon	agat-exon-87406	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 126819..126950 +
EsuBft1009_8a-0001-exon	agat-exon-87407	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 127139..127217 +
EsuBft1009_8a-0001-exon	agat-exon-87405	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 127443..128202 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_8a-0001-exon	agat-five_prime_utr-49	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_106 123361..123505 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_8a-0001-cds	EsuBft1009_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 123506..123584 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_8a-0001-exon	agat-three_prime_utr-83	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 126421..126562 +
EsuBft1009_8a-0001-exon	agat-three_prime_utr-84	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 126819..126950 +
EsuBft1009_8a-0001-exon	agat-three_prime_utr-85	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 127139..127217 +
EsuBft1009_8a-0001-exon	agat-three_prime_utr-86	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 127443..128202 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:123361..128202+
coding sequence from alignment at Scaffold_106:123361..128202+

spliced messenger RNA

>EsuBft1009_8a-0001 ID=EsuBft1009_8a-0001|Name=EsuBft1009_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1387bp|location=Sequence derived from alignment at Scaffold_106:123361..128202+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCTGTGGGTGCGTGGTCTTGTGTGTGCAGTGTGAAGAGGAAGTGGCC
GTTGGAAAATAGCAGATAGCAGAGGGTTGCTTCGGCCACGGAGCCCCCTA
TCCACATACCCCGTACGCCTCAGCCGTGTGCCCCCCCAGGTAAACATGAC
AACTGCGGATAGTGCTCTAAAGCTGGACCCCAGCTTTACTAGCATGCACA
TCAGGATTTCTTATGCACGGGCAGGGTTCAGGGAAGAAAGCCAACAATTC
GATGGCATCAACTGCCGGGCCTAAGAACTTGTGCTTGACCATGCACCAAC
CCTGGGCGTCGCTACTGGTTGCCGGTATAAAGCGCGTCGAGGGACGAAGC
TGGTCAACCGAGCACAGAGGAATCCTGTGGGTTCATGCAGCAGCGAAGGA
GCCAAACCCTGCGGAGGTTCGCGCGGTGGAGGACCAATATCGGTCAATTT
ATGCTGCTGACGGTAACTCAGACAAGCTGTGTCTACCGACATCATATCCA
ACTTCTTGTCTCCTCGGTTGCGTGGACATCGTGGGCTGCCTGCCTCAGGC
GGAATTCCAAGCAGCAGAGGACATCCCCCTGGGTCCAAAGCTTGAGAGTC
AGTCAGAATTCGTTTTTCTCTGTCAAGATCCAAGGCAGCTTGTTCTACCA
TTCAGCTTATCAGGACAACACAAATTGTGGAGGCTGGACAAGCCCACCAG
GGAGGCGGCCGAAGCGGGGTTGGGACCTATTGTTCACGGACCGTCTCCAG
CCGTCTTCCGTTCTTGCTAGAAGATGATTGAAGCGCAGTGGAGTACCCGA
ATACATCGATCTCGATTGCTTGGTTCCATCGAGTAGCTTGCGTCTTGGTC
GACGGTCCCGAACATTCCGGATCATTTGCCAGCGCTGCAACGCGAGGAAG
GCGCCCCTTTTTCGTTCTTTGAGGGTGGCTTGAGCTGTTGTTGCTGCGAT
TCTTACTCCGAGAGTTGCGGCTGTGTTTCTCCTGCTACTATATTTGCTGC
CTTCGCAAAAACCTTCGCCTTGGAATTTCGATTATAAGTAGGTTTGGTCT
GATCCCTGGACGGGAGTCAACTTCCTTCTCGTGGGTCTCGTAGCTCAGAC
ACTATACTGTCTGCCTAGTAGTAGTTGGGGCCCTCCGTGTTGCCTGACCG
CCCACATCTTGGATTTTTGGCGTGAAGGGCTGTCTGCCTGGTTCACGATG
AACCCGACAGAGAGGACGGGCGTTTTGAAAGGTGTGAAAGGTGAAGTGTA
CTGCAGGATGTGCGCGGTTGAATCATAGAGCCCAGGCCAAACCTCCAGGA
CGTTACACGAAAGGTGTGAAAGGTGAAGTGTACTACAGGATGTGCGCGGT
TGAATCATAGAGCCCAGGCCAAACCTCCAGGACGTTA

protein sequence of EsuBft1009_8a-0001

>EsuBft1009_8 ID=EsuBft1009_8|Name=EsuBft1009_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=42bp
MTTADSALKLDPSFTSMHIRISYARAGFREESQQFDGINCRA

mRNA from alignment at Scaffold_106:123361..128202+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1009_8a-0001 ID=EsuBft1009_8a-0001|Name=EsuBft1009_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4842bp|location=Sequence derived from alignment at Scaffold_106:123361..128202+ (Ectocarpus subulatus male Bft15b)
CCCCCTGTGGGTGCGTGGTCTTGTGTGTGCAGTGTGAAGAGGAAGTGGCC
GTTGGAAAATAGCAGATAGCAGAGGGTTGCTTCGGCCACGGAGCCCCCTA
TCCACATACCCCGTACGCCTCAGCCGTGTGCCCCCCCAGGTAAACATGAC
AACTGCGGATAGTGCTCTAAAGCTGGACCCCAGCTTTACTAGCATGCACA
TCAGGATTTCTTATGCACGGGCAGGTGAATTGGTACAGTGTCAGATTGGT
AGCTTGGCTAGCAATCCGGAGGCCAGTTGTGTATTTTGAACCTGAAATAG
AATACAGAGGATATTTTTTGAACCTATATCCGCATGAACAAGTAGATCAC
AGCCCAAGCAAGTGCTGTTTGTTCTCTTTGCTTTGAAATACATTTGGAAT
GTTCACCACCGCCAGATGAACACTACTACACTGGTGTTTGTATTGTTGAA
GTGATTTCTTGTGGGATACGTCCGGCTGGTATTTCTGCCACGGCCTCCAT
CATCATCAGTGCGGAACATATCTCTCTACATATCCGTTCAGCCATCTCTG
TCCTGCCCTTCTCTTCAGCTGTACTCGTGCCTCCGATCATTCGAAGTTTC
CCCCCCCGCCCCCATGTTCCATTCCCCCCCTGATCAGCTGTCCTTTTTGA
TGCAAAGAAATCACACCACACAACACAGTCAACGGATGGATATCGACACG
TTCCTATCGTAATACGTCACGTATTGGTGGCCGTACTAAGTGTCAAAGCA
GCGTTGCCATGGAAATTCTTAAATTGTGAATCCCTTCAGACCTACTTCTA
CGTCTGCATATGCATAGTACCTCATATTCTGCAAGGCGCCAAACTAAAGC
CCTTGCGGAATCAAGACATAAAGAGGAAGACATGACAAACACTTTTCAAG
CATTGAATGCCTGCGCTAATATGACAAACGGACTGCATTATTAGTACCCA
TACTTCAAACATCACGCGTAGCCTGCCATATTCCCACCAGAGAGCCGGTT
CGATGACGCCAATATGATGACCATGCTGCTGGAGTGCTGGGTGTCTAAGG
TCCTTGTACTCCGTTTTGGAAGAACATGCCATCGTATATCGTAGCAAGCA
GCAGATCCACAAACTCTCACTCGATACGTATTTCCCTGAACGATACGTTG
TGAAGACACTTTTTGTCAATGCCACCTACAGCAGCACAGTGCCGGCCCGC
ACTTAAGAACCTACTATATTGGGCGAGGCTCAGTTCTTATTGGCTGCCCC
GACCCGAGCACCAGTTCTTATTTGCCAAGTTCTTATTTCGTCGTCCATTC
TTCTCCAGAACGGGGCGTTCTTGTTCTTACAGTATTTTAACATAATTTGC
TATATTGTCGGCTGTCAACCATGAGCAACACTAGTACTGCTGTCGATACA
AGAAAATACCAAGGCATGGAGCAGCAACTGTCAACCTTCTTGGTCCACAA
GGGTGACGTTGGTCCTGCGTGCCCTTCCCGATCTACTAATGCTCTCAAGC
AAAACCCAGGAACCTACAGCCGTATCCGAAGCTCCGCTGTACTTGTCTAA
GGGCAACTTCATCTTGCGCGTACTCTGGTCTAGCTCCAGCTGCACACAGT
AGTCGTACAGGTGGCGAGTGTCCTTCTGAGATTGTTGAGTGATCAGCCCT
CCAAACCACCCCATGCCCAGCCTAACGAGCACTCCACGCCGCAAAAGCAA
TCTGTCAAGAGCAACGGGTTAAGCTTCTTGAATACGAAAGCCTGCCGGGA
TCTCCATTCCCTGTATCTCATCCTCCGGGTCTTGTGGGTCCATGCTGTCG
TCGTCGTCCTTAAGAGCTAGCTCGTCGGTCTGGGGTTGAGAGATGTCTGC
TAACGAGGCAACGGGAGACACAAGAAGTTAGGGTGTCACGTCGCCAAACC
CAACCTGAACTTATCATAATTTGAGTGCAGCCGTGCGCGGAAACAAGCTA
ACGTCAACATGAAGGACATCGTCATCAACAAAAAGAAGGTGAAGAGTTGG
TTTTGTGCAAAACAAACTTACCGCCGTCGTCTTCATCGCTGGAGTCAACG
CCCTCCATGAGCGTCTCACGTCCTCCATCGCCCTCCTCCGCCCGCCCCTC
AGGCTCATCGTTGCCGTTCTCCGAACCTTGTTCGCCGTCGCTACTGTCTT
CATCGTAAGCGAAGGTATACGGCTTGTCCAAACCCTCCAAGGTGATTCGA
TCATCGCCCGAGCCGTCCACGGTCATGACCATCCCGCACTTCTTGAAAAG
ACGGTATCGTTACGCCTGTTGGCTGTTGAGTCTTGCCATGGCCGCTCCCA
TCCACTGAGTGATCAGGACGCGCCGATCAGAAGCTGTCAGCGACGCGGTT
TCCCACCTCTCGAGGTTGTCCGACTGCTCGAGCCATATGTCCATCTGCCT
CCCGACTTCCACCTTGAGAAATCGTCCGGCTTCTGCATGAACTGGCTGCA
CCTCGTCCGTGCACTCCGAAGGGCCATACCAGGCGAGAGTGTTGCAGTGC
TTCGCAAGATACTCCTTGAACTCGTCCGTGGTCTGCGCGTGCAAGTTGTC
CATGATAAAAATAGACCTCGCCTTGGGGAGCTCACCCCGCCCGCGCATCA
CGCTTTCTCGGGGGCACCCAGGGGCACGACGCGTGCGTTCAATGCCCACC
CTCCCCCTCTATAAAAATACAAAGGTTGATATGTGGGGTATGTTCCCAAA
TCCAATACTCTGTACTCTGGGATCACTCCCCCCTCCTCCCTCCCTCCCCC
TGCGAGTATTATTATCTGGCAGCCGCTGCATTGCTGTCGTTCTTATTTGT
AGCAGCAGTTTTGCACCTCAGGTGTGTGTTCTTGTTCCTAACAGGGCGTG
CGGCTGAGCACGTGTTCTTATTGGTAAATCCTTAAGTTTTGTATTTTTTG
AGCATCAAATTCCTAAGTGCCATATTCTTAAGTGCGGGCCGGCACTGTAG
ACGTTTATTTGATACCCTTTACTACAATTGAATCTCCGTGTCTCCTTATC
GTTTTCACAGGGTTCAGGGAAGAAAGCCAACAATTCGATGGCATCAACTG
CCGGGCCTAAGAACTTGTGCTTGACCATGCACCAACCCTGGGCGTCGCTA
CTGGTTGCCGGTATAAAGCGCGTCGAGGGACGAAGCTGGTCAACCGAGCA
CAGAGGAATCCTGTGGGTTCATGCAGCAGCGAAGGAGCCAAACCCTGCGG
AGGTGAGCATGGTAAAAGGCGTGCAGGCCCGCCAAAGAACGGATACATGC
GGAATGCTTGTTGACGAACTAACAATACGGGGTCAACACTCTCGAAATGG
CTCTCCCTGCTGGCGCTTGGTGTGCCTATTTCATCTGAATTGTATTCGTT
TGCACACCCTACTCTACATGTACGGTGTACGCGGAATATTTGAACTCGGA
ATCTACAATACTGTGATTCTTTCCCCCAAACGTTATTGATTATAATAAAA
AAGTGTAGGTTCGCGCGGTGGAGGACCAATATCGGTCAATTTATGCTGCT
GACGGTAACTCAGACAAGCTGTGTCTACCGACATCATATCCAACTTCTTG
TCTCCTCGGTTGCGTGGACATCGTGGGCTGCCTGCCTCAGGTATGTATGT
GTGTTTATTTGTGCCCATATTTTTACGTTCCACGTAAGGGCGCGCTCTCC
GAGGGATCTCTTATGCCTCTCGGGTGCGGTGAGTTCTTCGAAGGAAGCCA
GTCGTTTCGTTTGCATACACCTACCTGTTTTGACTCATACATTGCCGGTT
TTGTGTGTCGGTGGCCCGTGCATGGCAGGCGGAATTCCAAGCAGCAGAGG
ACATCCCCCTGGGTCCAAAGCTTGAGAGTCAGTCAGAATTCGTTTTTCTC
TGTCAAGGTAAGGTGCGTGTTTTGCTCGACAACGTTACATCGCAACCAAT
ACTACTGGTGTCGGCGCTCCCTAGCAATGCTGCTCTTGCTGAGAATAGAG
GTTGTGGCTGCAGGTAAACGTTGGCGTACACCTTGATGCACAAGACAGGA
TATCTAGATATCACCGCAGCAAGGCAGCCTGACATGATGTGCTCTCCTGC
TGTGGTCCCTCGCGTACCCCTGTGCCTCTCAGATCCAAGGCAGCTTGTTC
TACCATTCAGCTTATCAGGACAACACAAATTGTGGAGGCTGGACAAGCCC
ACCAGGGAGGCGGCCGAAGCGGGGTTGGGACCTATTGTTCACGGACCGTC
TCCAGCCGTCTTCCGTTCTTGCTAGAAGATGATTGAAGCGCAGTGGAGTA
CCCGAATACATCGATCTCGATTGCTTGGTTCCATCGAGTAGCTTGCGTCT
TGGTCGACGGTCCCGAACATTCCGGATCATTTGCCAGCGCTGCAACGCGA
GGAAGGCGCCCCTTTTTCGTTCTTTGAGGGTGGCTTGAGCTGTTGTTGCT
GCGATTCTTACTCCGAGAGTTGCGGCTGTGTTTCTCCTGCTACTATATTT
GCTGCCTTCGCAAAAACCTTCGCCTTGGAATTTCGATTATAAGTAGGTTT
GGTCTGATCCCTGGACGGGAGTCAACTTCCTTCTCGTGGGTCTCGTAGCT
CAGACACTATACTGTCTGCCTAGTAGTAGTTGGGGCCCTCCGTGTTGCCT
GACCGCCCACATCTTGGATTTTTGGCGTGAAGGGCTGTCTGCCTGGTTCA
CGATGAACCCGACAGAGAGGACGGGCGTTTTGAAAGGTGTGAAAGGTGAA
GTGTACTGCAGGATGTGCGCGGTTGAATCATAGAGCCCAGGCCAAACCTC
CAGGACGTTACACGAAAGGTGTGAAAGGTGAAGTGTACTACAGGATGTGC
GCGGTTGAATCATAGAGCCCAGGCCAAACCTCCAGGACGTTA

Coding sequence (CDS) from alignment at Scaffold_106:123361..128202+

>EsuBft1009_8a-0001 ID=EsuBft1009_8a-0001|Name=EsuBft1009_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=129bp|location=Sequence derived from alignment at Scaffold_106:123361..128202+ (Ectocarpus subulatus male Bft15b)
ATGACAACTGCGGATAGTGCTCTAAAGCTGGACCCCAGCTTTACTAGCAT
GCACATCAGGATTTCTTATGCACGGGCAGGGTTCAGGGAAGAAAGCCAAC
AATTCGATGGCATCAACTGCCGGGCCTAA