EsuBft1008_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1008_4a-0001
Unique Name	EsuBft1008_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:710323..711568 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	164328.Phyra85518
ProteomeId	EsuBft1008_4
Protein domains	IPR013103
Protein domains	SSF56672
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	3
Max annot lvl	4776\|Peronosporales
Length	1077
Hectar predicted targeting category	other localisation
Evalue	3.89e-54
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QH4V@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	GAG-pre-integrase domain
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0005515
EC	3.1
GO	0003824
GO	0097159
GO	1901363
GO	0004518
GO	0090304
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1008_4a	EsuBft1008_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 710323..711568 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1008_4a-0001-exon	agat-exon-97136	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 710323..710822 +
EsuBft1008_4a-0001-exon	EsuBft1008_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 710927..711147 +
EsuBft1008_4a-0001-exon	agat-exon-97137	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 711213..711568 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1008_4a-0001-cds	EsuBft1008_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 710323..710822 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1008_4a-0001	EsuBft1008_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 710323..711568 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:710323..711568+
coding sequence from alignment at Scaffold_370:710323..711568+

spliced messenger RNA

>EsuBft1008_4a-0001 ID=EsuBft1008_4a-0001|Name=EsuBft1008_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1077bp|location=Sequence derived from alignment at Scaffold_370:710323..711568+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCGGTAGCGAACGAGAAGGGCATGAACCTCAATCACTGGGATGT
GAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTTTTCTGAAGC
TCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGGCTGAGCGT
GCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGGGGGTACCACGCTGC
TGATACGCTAGTCGAGAACGGGTTCGAGCAGTTCAAGGCGGACCCGTGTG
AATTCCGCAACATGGTAGACGAAGTCGTGGTGATGATTATTGTGATATAC
GTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGGGATTGCGAGGA
GTTGCTTACTTCTCTCAACAAGAAATTTCCCACCAATAATGTTGGAGAAT
GCGAACGGTTTGACGGGTGCGCCATTGAGAGAGATGGAGAGGCTGGGACT
CTTAGAATCTCCCAAACCGCGTACACTGATAGCATGGTGAGACGCTTCGT
CATGATGTGGGTTTCAACGTTCTCGCGTCCAGACGTCTCGTTCGCCGTGC
GTGCGGCAGCGCGCCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCC
ATACAGAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCTCGGCATCAC
CTACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTAGCT
ACATCGACACGGAGGATAAACAGCATCGTGTCTTGTCTTCGATGGAAGCC
GAGTATATTGCTGCCGGGGAGGGCGTCAAGGAGGCGTTGTTTGTGCGTGC
TGTGCTTTCGTTTGTTGCCCCAGAGACCAGTGGTAGCAGCATCCAGGTCC
TTGAGGACAACCAGGGGGTCATAGTGTTGGTGCAGAACCCCCTCAGCTCC
GGTCGCACGAAACACATCGACGTGCGGTTCCATTTCATCCGCGGATTGTT
TAGGTCGGGGGATATTTCAGCCAAATTTGTTCCGACAACAGAGCAACACG
CGGATCGCCTAACCAAGGCCCTTAGCAGGGCCAGTCTGCCGTACCACCGG
CGCAAGTTGATGGATTTGCCGGAGTAG

protein sequence of EsuBft1008_4a-0001

>EsuBft1008_4 ID=EsuBft1008_4|Name=EsuBft1008_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=358bp
MLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAER
AIYGLKQSGRQWGYHAADTLVENGFEQFKADPCEFRNMVDEVVVMIIVIY
VDDILVAGSDEDWDCEELLTSLNKKFPTNNVGECERFDGCAIERDGEAGT
LRISQTAYTDSMVRRFVMMWVSTFSRPDVSFAVRAAARHAHAPAKRHWDA
IQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYIDTEDKQHRVLSSMEA
EYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGVIVLVQNPLSS
GRTKHIDVRFHFIRGLFRSGDISAKFVPTTEQHADRLTKALSRASLPYHR
RKLMDLPE

mRNA from alignment at Scaffold_370:710323..711568+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1008_4a-0001 ID=EsuBft1008_4a-0001|Name=EsuBft1008_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1246bp|location=Sequence derived from alignment at Scaffold_370:710323..711568+ (Ectocarpus subulatus male Bft15b)
ATGCTTGCGGTAGCGAACGAGAAGGGCATGAACCTCAATCACTGGGATGT
GAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTTTTCTGAAGC
TCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGGCTGAGCGT
GCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGGGGGTACCACGCTGC
TGATACGCTAGTCGAGAACGGGTTCGAGCAGTTCAAGGCGGACCCGTGTG
AATTCCGCAACATGGTAGACGAAGTCGTGGTGATGATTATTGTGATATAC
GTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGGGATTGCGAGGA
GTTGCTTACTTCTCTCAACAAGAAATTTCCCACCAATAATGTTGGAGAAT
GCGAACGGTTTGACGGGTGCGCCATTGAGAGAGATGGAGAGGCTGGGACT
CTTAGAATCTCCCAAACCGCGTACACTGATAGCATGGTGAGACGCTTCGT
GTACAATCGACCTTCCACATTCCCGCTACCCCTGGTGCCGACCTAGGACC
AAAGCGAGATGACGAGGAGGGAGGAAAGTGGCCGGTGAGGGAGGCCATCG
GCAGCATGATGTGGGTTTCAACGTTCTCGCGTCCAGACGTCTCGTTCGCC
GTGCGTGCGGCAGCGCGCCACGCCCACGCCCCGGCGAAGCGGCACTGGGA
TGCCATACAGAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCTCGGCA
TCACCTACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCT
AGCTACATCGACACGGAGGATAAACGTACGGTGTCAGAGTTGGCGACGAC
GGTTGGAGATACCGTAGTCAGCCATGGTAGCAAGACACAGAGCATCGTGT
CTTGTCTTCGATGGAAGCCGAGTATATTGCTGCCGGGGAGGGCGTCAAGG
AGGCGTTGTTTGTGCGTGCTGTGCTTTCGTTTGTTGCCCCAGAGACCAGT
GGTAGCAGCATCCAGGTCCTTGAGGACAACCAGGGGGTCATAGTGTTGGT
GCAGAACCCCCTCAGCTCCGGTCGCACGAAACACATCGACGTGCGGTTCC
ATTTCATCCGCGGATTGTTTAGGTCGGGGGATATTTCAGCCAAATTTGTT
CCGACAACAGAGCAACACGCGGATCGCCTAACCAAGGCCCTTAGCAGGGC
CAGTCTGCCGTACCACCGGCGCAAGTTGATGGATTTGCCGGAGTAG

Coding sequence (CDS) from alignment at Scaffold_370:710323..711568+

>EsuBft1008_4a-0001 ID=EsuBft1008_4a-0001|Name=EsuBft1008_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1077bp|location=Sequence derived from alignment at Scaffold_370:710323..711568+ (Ectocarpus subulatus male Bft15b)
ATGCTTGCGGTAGCGAACGAGAAGGGCATGAACCTCAATCACTGGGATGT
GAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTTTTCTGAAGC
TCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGGCTGAGCGT
GCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGGGGGTACCACGCTGC
TGATACGCTAGTCGAGAACGGGTTCGAGCAGTTCAAGGCGGACCCGTGTG
AATTCCGCAACATGGTAGACGAAGTCGTGGTGATGATTATTGTGATATAC
GTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGGGATTGCGAGGA
GTTGCTTACTTCTCTCAACAAGAAATTTCCCACCAATAATGTTGGAGAAT
GCGAACGGTTTGACGGGTGCGCCATTGAGAGAGATGGAGAGGCTGGGACT
CTTAGAATCTCCCAAACCGCGTACACTGATAGCATGGTGAGACGCTTCGT
CATGATGTGGGTTTCAACGTTCTCGCGTCCAGACGTCTCGTTCGCCGTGC
GTGCGGCAGCGCGCCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCC
ATACAGAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCTCGGCATCAC
CTACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTAGCT
ACATCGACACGGAGGATAAACAGCATCGTGTCTTGTCTTCGATGGAAGCC
GAGTATATTGCTGCCGGGGAGGGCGTCAAGGAGGCGTTGTTTGTGCGTGC
TGTGCTTTCGTTTGTTGCCCCAGAGACCAGTGGTAGCAGCATCCAGGTCC
TTGAGGACAACCAGGGGGTCATAGTGTTGGTGCAGAACCCCCTCAGCTCC
GGTCGCACGAAACACATCGACGTGCGGTTCCATTTCATCCGCGGATTGTT
TAGGTCGGGGGATATTTCAGCCAAATTTGTTCCGACAACAGAGCAACACG
CGGATCGCCTAACCAAGGCCCTTAGCAGGGCCAGTCTGCCGTACCACCGG
CGCAAGTTGATGGATTTGCCGGAGTAG