EsuBft1008_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1008_2a-0001
Unique Name	EsuBft1008_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:726775..728824 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1008_2
Protein domains	IPR001878
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	197
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1008_2a	EsuBft1008_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 726775..728824 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1008_2a-0001-exon	agat-exon-97126	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 726775..727080 +
EsuBft1008_2a-0001-exon	EsuBft1008_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 727154..728824 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1008_2a-0001-cds	EsuBft1008_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 726775..727080 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1008_2a-0001-exon	agat-three_prime_utr-68	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_370 728765..728824 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1008_2a-0001	EsuBft1008_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 726775..728764 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:726775..728824+
coding sequence from alignment at Scaffold_370:726775..728824+

spliced messenger RNA

>EsuBft1008_2a-0001 ID=EsuBft1008_2a-0001|Name=EsuBft1008_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1977bp|location=Sequence derived from alignment at Scaffold_370:726775..728824+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGTCGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTCCGCTGCTCACAACCAAGATTATAGTAGTGCCATGGGAGATGGT
GGTGCTGCTGTTGGCTTTGGATACGGAGCCACAACCCCAGCGACGGGGTA
CCAATGTGTGCGGTACACTTCTGCTCTGTTCAGCGGCAAATCGAAAGATT
TCAACGAATGATTTCCGCATGGCAGCTAATGGGGCAAACCTGTTGGAACA
ATTTGAAGAGAGCGGGAGCTTGAAGATCCCCGTCAACAGCGGAAAGAGCA
AGTTTTCGCTGTCACGGCAGTACCGGAGCGAGCAAGTAAAGCACGCATTC
CACGCGTGGAACTTCCTGTCTCACGCGTTGAAAGAAAAAGATCGGAAAAT
CATGAAGAGGGCAGAGACGCCCCAGGGAGCTCTTCGTGAGCTCAAGACCA
TACACGACCCTGAATCATCTGTACAGCCGTCTGAGAACCTCAAGTCCCTG
ACGTCGACCAAGATCTCTAGAGGTGAAAACCGCCAAAACGCCCGAAATGA
GGTGCTCCAAACCGCAAAGTCTTTGTCCGAGGAAGGACTAACTGTCAACG
AAACGTTCGTCCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCC
ATGACAAAGCACAACCTGCGACACGCGAAGGAGTTGACGCCGACCGGTGT
GCTAAAGGAAGTAATGATCGAATACATGGCGATCAAGGACAAGCTGGAGC
AGGGGAAAGGAAAAGGGGCGAAGGGCGCAGAGCAAGCGTACTTCGCCGAC
GGTGAGGGCCGCAGGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCG
TGGTCGTGGCGGCGGCCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAG
GTGGTCGCGGCGGCGGCGGCGGCGGTCGCGGCGGCCGCTCAGGCGGCTCC
GGAGGAATCGGGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGCGG
CGGTGGCGGGCACTATAAGTTCCCGGGCCGGTGCTTTAGGTGTGGACATC
GTGGACATCAAGCGATCGGCTGCACTACCAACGAGAAGGACTTCGTGCCG
TGGTGTGCGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAGTGCGCGAC
GGAGGAGGCCGTCCTAGCGCAAGTGGTGGAGCATGGGAGCGACGTGGACT
CCGTGGAAGACCAGGCGTTTTGTGCCGTGGCAGTCCCCCCAGGCGAGTGT
GGTACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGCCAGGC
GGTGTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGATGTGCAG
ACAACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCGGA
GGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTAGT
CCTACAGACGGAAGATGGTGGAGTACCCGCACCAGTACTGAATGCTGCCT
ATGTACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCATTGGCGGAG
GAGGGCCGCACGTATTCGGGGATGAATGGGGGCCTCACGCTGACCACGAA
TGCCGGGGTGGAGGTGTGGTTCCCCCGGACTGGAAAGCTGCTGACCCAAC
GAGGCTATCAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft1008_2a-0001

>EsuBft1008_2 ID=EsuBft1008_2|Name=EsuBft1008_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=639bp
MSGRKDGGDSSSDSAAEDRKRSREELVALRTQVSSLTDQMSQLMSLVEDT
MKASKKEEPAGTMEGAADRGDARESAAAESTNAEGGAPWTGSAQDGRYLR
EPPLLTTKIIVVPWEMVVLLLALDTEPQPQRRGTNVCGTLLLCSAANRKI
STNDFRMAANGANLLEQFEESGSLKIPVNSGKSKFSLSRQYRSEQVKHAF
HAWNFLSHALKEKDRKIMKRAETPQGALRELKTIHDPESSVQPSENLKSL
TSTKISRGENRQNARNEVLQTAKSLSEEGLTVNETFVLHLFLDALSDEYA
MTKHNLRHAKELTPTGVLKEVMIEYMAIKDKLEQGKGKGAKGAEQAYFAD
GEGRRERYSSRSQGQGRGRGGGRGRSSSRGRGGGGRGGGGGGRGGRSGGS
GGIGESKGSSSGGADGGGGGHYKFPGRCFRCGHRGHQAIGCTTNEKDFVP
WCARCEGWGHTKEKCATEEAVLAQVVEHGSDVDSVEDQAFCAVAVPPGEC
GTVGEVGLVGVVEQGQAVYVADTAATCSMFRCADNFVNYRERSGWVKGIG
GDKAPVPLLGYGDVTLVLQTEDGGVPAPVLNAAYVPEAPYNLLSLSSLAE
EGRTYSGMNGGLTLTTNAGVEVWFPRTGKLLTQRGYQIX

mRNA from alignment at Scaffold_370:726775..728824+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1008_2a-0001 ID=EsuBft1008_2a-0001|Name=EsuBft1008_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2050bp|location=Sequence derived from alignment at Scaffold_370:726775..728824+ (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTGTTCGAGAGTCTGGCCCGTCAGGGCGACACAGCGGCGAAGCAGG
GGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACAACCAAGATT
ATAGTAGTGCCATGGGAGATGGTGGTGCTGCTGTTGGCTTTGGATACGGA
GCCACAACCCCAGCGACGGGGTACCAATGTGTGCGGTACACTTCTGCTCT
GTTCAGCGGCAAATCGAAAGATTTCAACGAATGATTTCCGCATGGCAGCT
AATGGGGCAAACCTGTTGGAACAATTTGAAGAGAGCGGGAGCTTGAAGAT
CCCCGTCAACAGCGGAAAGAGCAAGTTTTCGCTGTCACGGCAGTACCGGA
GCGAGCAAGTAAAGCACGCATTCCACGCGTGGAACTTCCTGTCTCACGCG
TTGAAAGAAAAAGATCGGAAAATCATGAAGAGGGCAGAGACGCCCCAGGG
AGCTCTTCGTGAGCTCAAGACCATACACGACCCTGAATCATCTGTACAGC
CGTCTGAGAACCTCAAGTCCCTGACGTCGACCAAGATCTCTAGAGGTGAA
AACCGCCAAAACGCCCGAAATGAGGTGCTCCAAACCGCAAAGTCTTTGTC
CGAGGAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTTCCTGG
ATGCCCTTTCGGACGAGTATGCCATGACAAAGCACAACCTGCGACACGCG
AAGGAGTTGACGCCGACCGGTGTGCTAAAGGAAGTAATGATCGAATACAT
GGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCGAAGGGCG
CAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAGGGAGCGGTACTCA
AGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGTGGCCGCAG
CAGCAGTCGTGGCCGCGGCGGAGGTGGTCGCGGCGGCGGCGGCGGCGGTC
GCGGCGGCCGCTCAGGCGGCTCCGGAGGAATCGGGGAGAGCAAGGGAAGC
AGCAGTGGAGGCGCCGATGGCGGCGGTGGCGGGCACTATAAGTTCCCGGG
CCGGTGCTTTAGGTGTGGACATCGTGGACATCAAGCGATCGGCTGCACTA
CCAACGAGAAGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGGGGTGGGGC
CACACCAAAGAAAAGTGCGCGACGGAGGAGGCCGTCCTAGCGCAAGTGGT
GGAGCATGGGAGCGACGTGGACTCCGTGGAAGACCAGGCGTTTTGTGCCG
TGGCAGTCCCCCCAGGCGAGTGTGGTACCGTTGGTGAAGTAGGTCTAGTG
GGGGTTGTGGAACAAGGCCAGGCGGTGTACGTGGCCGACACAGCGGCCAC
GTGCTCCATGTTCCGATGTGCAGACAACTTCGTGAACTACCGTGAGCGTA
GCGGTTGGGTGAAGGGGATCGGAGGCGACAAGGCCCCCGTTCCTCTTCTA
GGATACGGAGATGTGACCTTAGTCCTACAGACGGAAGATGGTGGAGTACC
CGCACCAGTACTGAATGCTGCCTATGTACCAGAGGCCCCCTACAACCTCC
TCTCGCTGTCTTCATTGGCGGAGGAGGGCCGCACGTATTCGGGGATGAAT
GGGGGCCTCACGCTGACCACGAATGCCGGGGTGGAGGTGTGGTTCCCCCG
GACTGGAAAGCTGCTGACCCAACGAGGCTATCAAATANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_370:726775..728824+

>EsuBft1008_2a-0001 ID=EsuBft1008_2a-0001|Name=EsuBft1008_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1917bp|location=Sequence derived from alignment at Scaffold_370:726775..728824+ (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTCCGCTGCTCACAACCAAGATTATAGTAGTGCCATGGGAGATGGT
GGTGCTGCTGTTGGCTTTGGATACGGAGCCACAACCCCAGCGACGGGGTA
CCAATGTGTGCGGTACACTTCTGCTCTGTTCAGCGGCAAATCGAAAGATT
TCAACGAATGATTTCCGCATGGCAGCTAATGGGGCAAACCTGTTGGAACA
ATTTGAAGAGAGCGGGAGCTTGAAGATCCCCGTCAACAGCGGAAAGAGCA
AGTTTTCGCTGTCACGGCAGTACCGGAGCGAGCAAGTAAAGCACGCATTC
CACGCGTGGAACTTCCTGTCTCACGCGTTGAAAGAAAAAGATCGGAAAAT
CATGAAGAGGGCAGAGACGCCCCAGGGAGCTCTTCGTGAGCTCAAGACCA
TACACGACCCTGAATCATCTGTACAGCCGTCTGAGAACCTCAAGTCCCTG
ACGTCGACCAAGATCTCTAGAGGTGAAAACCGCCAAAACGCCCGAAATGA
GGTGCTCCAAACCGCAAAGTCTTTGTCCGAGGAAGGACTAACTGTCAACG
AAACGTTCGTCCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCC
ATGACAAAGCACAACCTGCGACACGCGAAGGAGTTGACGCCGACCGGTGT
GCTAAAGGAAGTAATGATCGAATACATGGCGATCAAGGACAAGCTGGAGC
AGGGGAAAGGAAAAGGGGCGAAGGGCGCAGAGCAAGCGTACTTCGCCGAC
GGTGAGGGCCGCAGGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCG
TGGTCGTGGCGGCGGCCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAG
GTGGTCGCGGCGGCGGCGGCGGCGGTCGCGGCGGCCGCTCAGGCGGCTCC
GGAGGAATCGGGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGCGG
CGGTGGCGGGCACTATAAGTTCCCGGGCCGGTGCTTTAGGTGTGGACATC
GTGGACATCAAGCGATCGGCTGCACTACCAACGAGAAGGACTTCGTGCCG
TGGTGTGCGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAGTGCGCGAC
GGAGGAGGCCGTCCTAGCGCAAGTGGTGGAGCATGGGAGCGACGTGGACT
CCGTGGAAGACCAGGCGTTTTGTGCCGTGGCAGTCCCCCCAGGCGAGTGT
GGTACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGCCAGGC
GGTGTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGATGTGCAG
ACAACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCGGA
GGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTAGT
CCTACAGACGGAAGATGGTGGAGTACCCGCACCAGTACTGAATGCTGCCT
ATGTACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCATTGGCGGAG
GAGGGCCGCACGTATTCGGGGATGAATGGGGGCCTCACGCTGACCACGAA
TGCCGGGGTGGAGGTGTGGTTCCCCCGGACTGGAAAGCTGCTGACCCAAC
GAGGCTATCAAATANNN