EsuBft1007_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1007_6a-0001
Unique Name	EsuBft1007_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_519	contig	Scaffold_519:219442..222613 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1007_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	317
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Ankyrin repeats
Ec32 ortholog	Ec-10_004640.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_6a	EsuBft1007_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_519 219442..222613 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_6a-0001-exon	EsuBft1007_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_519 219442..222613 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_6a-0001-exon	agat-five_prime_utr-37	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_519 219442..219520 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_6a-0001-cds	EsuBft1007_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_519 219521..219946 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_6a-0001-exon	agat-three_prime_utr-63	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_519 219947..222613 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_6a-0001	EsuBft1007_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_519 219521..219946 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_519:219442..222613+
coding sequence from alignment at Scaffold_519:219442..222613+

spliced messenger RNA

>EsuBft1007_6a-0001 ID=EsuBft1007_6a-0001|Name=EsuBft1007_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3172bp|location=Sequence derived from alignment at Scaffold_519:219442..222613+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCCGGTACGAGTCGCACTGATCTCTCGCCAGACTTCAAGACCAAGGTGG
ACGAATTCCTCACAACCGTGACGACCCGGATGAGGGAAAATACCGCAGCC
ACCGAAAACGATGGGGGCGAAGAGAAATTTGCACCAACCACCCCAACATC
TCACGATCTCGGGCAACAGCAGGATAGGGGATGGACTCATAAAGGAATCC
AAGTGCCATATTTTGGCGGCGAGGAAGTATCGACAGACCGAGATGGAACA
GCGGTGTTTCCACGTGGTGGTGGTGCAGAGAAGGGTAGCACGGATAGCCC
CGACAATGAACCAACGGAAAGCAGCATCAGCGGCGATGGCGGCAAGTCTG
ATTCTGATCTTCCAGAAATCTTGGAACTCCCTCCAGTTTGTGAAAGGGGT
AGCCCACAGCGAGGGATGAATTTGCTAGGATCAATGGATGGGAGTTCACG
AGGGACGGCGATACGACATACATCAATGCCCCACCACACGTGTGGAGGAA
ACTGAAGCTATCGAGGATTCGTGTGCTGTAGGGCGGTAGATGCCGTTCGG
ATAGTCTCGTCATAGTTTCCAGAGGGTTATATGTGCGACCTTCGTATTGT
TGCACACCGTTGTACTATTGAGGAGCGTTGCCGTGGAAGGTGTGCTTGCA
GCATCATCCATGAGCGTGCAAAATTCCCGCTGGGGTGCATTTAGTATATG
AAAGTCGTTAGATATCCGCGGGCACGATGGCCTTGCTTGCCATGGTTTCC
ACAGTGGTCCATGCTTGAGCCGGATCACCGCCAAAATGATGGAATTCATG
TAATATGCCTGTGCAACATGGAATTAGTCCCACGTTCTGGTACACTTGCT
GATTTGGATTCCTACGTCGACATGTGCCGTCGTTTGCACCCTGCCACAGA
GCGTAACATCTATATATATATATATATCCGTAGAGCGTGAAGGTGGCATG
ACAGTGAAATAGTTCGTGGTGTAGTTTGTGCTAAACGCCTGCCATTCGCT
CGCACTGCAAGTAGTGGGCATGCAACCCTTGGGCACGTTGGTCGTTTTTT
CGATTTTACCGCTGTGATATTCTTTAGACTACCGTAAGCCTCTCTACTCT
GTCGAGTGCGCGTACGCCCGAGGCACGCGCGACCACATCCGGAACTCGTT
TATTGCTGTGGTTGTTATTGCTGTGGTTGTTGTTGATGGTGATGGTGCTG
CTGTTGCTGTTGCCGACAAATGGAAGGTGGGCGTCCTGGACGAGAAGGCT
TTGCGGCTGAAGGTGCAGCATGTCGTCGAGGCCCAACGTTACCTGCAAAA
GTAGGTTCTCGACAAGGTGCAGGCGAGTCGGAGTCAGCACCGAGCGTATG
CGCGTGTTGGGAGCCTATCTGAAATTGTGGTGGGGGACTACGTGTTGATG
GCACGCATTCGCCGGCGTGGGTTCACACCGAAAATTCTTATCACCTGGAG
GGGGCCGTGGAGCATTGTCGTCGCCGAGAGACCGCAAGTGTACGGAGTCC
AGAACATCGTGTCGGGCGAAGTTCGGAATGTCCACGTCGCGCGCGTGCGG
TTCAACGCCGATGCCGCTCTCGATTTCACGGCAGAGTTGAAGGAAGTTTG
TCAGCATGCTTTCGCGCGAGATTGTGGAAATGTTGGTGGCGGAAGACGGT
CCTGGGTTTGATGTGGAGGTGGAGGGGTTCGGTTTCGACAAGGAAGACAA
ACCTGGGAAAAGCTGCCAAAGGTCCGGGATGCCGTTTGTCAAATCCGGCC
TGCGGCGGCTGGGTTTTCCGAAAAAGGTTCGGGCTCAGTGGAAGCAACAA
TACGGCATTACCTTGTAAGTAATTCGTTTGAGTTGAGTGAAGGCCGTCTT
GTTTGTTTGCGTATGGCGTTTCTCCGCTAACTTCTCTTGAGTTTGTGCTT
CATTCGTTTGAGTTGAGTGAGGGCTATCCTGTCGAGTATTGATGGCATTT
CTTCGCTGACTGCTTGATGTACATTCTTCAGCATGCCGCGCATTTATTTG
GTTGTGGCGTGCCTGACTCTGGCATGTGTAGGTAGACCACTGTCAACCGC
GTTGCCTAGTGTTGGGGGTGCCTTGGCTAGTCTGATGGTTGCATGTGGTT
GAACTGCTTTGAGGCCGCCTTTGACACCGTGTTGGTGGCAGTTCTCTGCG
AGCTGCGTACGTTTTGAATTTGTAACGTTGATTGGCTTATTCGGCAATCA
TGTCGATCGTTGCACCATGGATATCGATATTTCGAGGAACTTCAATTCAA
CCTTGGAAGCGCCTCGCAACGGCTTTTGTTGTTTCTTTCATCGTTTTCCC
TGCGCGTTGCAAACGAACCCGCACGCTTCAAGTTGGTTGCGCCGTGTTGG
TCGTCTATCAACTACTTAAGTTTGCTTCTGTTTTCGAGCGCGCGGCCTTA
GCCAATCTATATAGTGTGATCGTCCGTCACCTGCGTGTTGTTGTCATTTG
TAGCGTCGCGTGCCTTTCATTGTTGAATGGGAGCATTCCACGCTTTACAT
GGGAGGTTGAACACTTGCGCTTACTAAAGAAATGGCATGGTACTCCGGCA
TGAGATCCCCATGTATCGCTGTTTATCATTCATGAAACACCGCTGTCGAT
TATCTTGAATATTTCCAAGTGCCTACTATCTGATGGGCATTGTGGATGCG
GTGCACCTGGGTAGCAGTAGTTCACGGTGAGGAGCCGACTTTGCATATCT
GCACGTCTAAGGTAAGGTAGATCGGGGTTTCAATTTGCCTGGTTGGCATG
TTTGAGGAGAGCGAGATTGATGATAGATAAAGAGAGAGAGACTCGTTCGT
GTGAAATAATACATCTTGCTACCATCACTCAGAAGGTACATCGACCAGCC
CCCCCCACCGAGGCCACGTGGGGAGAATTCTGGTCCTAGACCCTGCTTAT
TTTCAGTCGTGTCTACAGGTATCTTCTCTTTTACGACTTGGTATGAAGAA
GATACTTGCTCAATCACGTATCTTCTTCGTACATGTATCATACCCGAACA
ATAGGAAGCTAGGATCTCGTGGCATGTAGACTAGATTATACAGTCTACGC
AACAATCGAGGGAGAAACAGCTGAATCATTGTCGCTAAAATAATGAACGC
AAGCACCGCAAAAGGAAGGAAGATACTTCAACTCCTGTGTGATCCCGGAT
GGTACGTCCAGAATTGCTCCCT

protein sequence of EsuBft1007_6a-0001

>EsuBft1007_6 ID=EsuBft1007_6|Name=EsuBft1007_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=141bp
MRENTAATENDGGEEKFAPTTPTSHDLGQQQDRGWTHKGIQVPYFGGEEV
STDRDGTAVFPRGGGAEKGSTDSPDNEPTESSISGDGGKSDSDLPEILEL
PPVCERGSPQRGMNLLGSMDGSSRGTAIRHTSMPHHTCGGN

mRNA from alignment at Scaffold_519:219442..222613+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1007_6a-0001 ID=EsuBft1007_6a-0001|Name=EsuBft1007_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3172bp|location=Sequence derived from alignment at Scaffold_519:219442..222613+ (Ectocarpus subulatus male Bft15b)
TTCCGGTACGAGTCGCACTGATCTCTCGCCAGACTTCAAGACCAAGGTGG
ACGAATTCCTCACAACCGTGACGACCCGGATGAGGGAAAATACCGCAGCC
ACCGAAAACGATGGGGGCGAAGAGAAATTTGCACCAACCACCCCAACATC
TCACGATCTCGGGCAACAGCAGGATAGGGGATGGACTCATAAAGGAATCC
AAGTGCCATATTTTGGCGGCGAGGAAGTATCGACAGACCGAGATGGAACA
GCGGTGTTTCCACGTGGTGGTGGTGCAGAGAAGGGTAGCACGGATAGCCC
CGACAATGAACCAACGGAAAGCAGCATCAGCGGCGATGGCGGCAAGTCTG
ATTCTGATCTTCCAGAAATCTTGGAACTCCCTCCAGTTTGTGAAAGGGGT
AGCCCACAGCGAGGGATGAATTTGCTAGGATCAATGGATGGGAGTTCACG
AGGGACGGCGATACGACATACATCAATGCCCCACCACACGTGTGGAGGAA
ACTGAAGCTATCGAGGATTCGTGTGCTGTAGGGCGGTAGATGCCGTTCGG
ATAGTCTCGTCATAGTTTCCAGAGGGTTATATGTGCGACCTTCGTATTGT
TGCACACCGTTGTACTATTGAGGAGCGTTGCCGTGGAAGGTGTGCTTGCA
GCATCATCCATGAGCGTGCAAAATTCCCGCTGGGGTGCATTTAGTATATG
AAAGTCGTTAGATATCCGCGGGCACGATGGCCTTGCTTGCCATGGTTTCC
ACAGTGGTCCATGCTTGAGCCGGATCACCGCCAAAATGATGGAATTCATG
TAATATGCCTGTGCAACATGGAATTAGTCCCACGTTCTGGTACACTTGCT
GATTTGGATTCCTACGTCGACATGTGCCGTCGTTTGCACCCTGCCACAGA
GCGTAACATCTATATATATATATATATCCGTAGAGCGTGAAGGTGGCATG
ACAGTGAAATAGTTCGTGGTGTAGTTTGTGCTAAACGCCTGCCATTCGCT
CGCACTGCAAGTAGTGGGCATGCAACCCTTGGGCACGTTGGTCGTTTTTT
CGATTTTACCGCTGTGATATTCTTTAGACTACCGTAAGCCTCTCTACTCT
GTCGAGTGCGCGTACGCCCGAGGCACGCGCGACCACATCCGGAACTCGTT
TATTGCTGTGGTTGTTATTGCTGTGGTTGTTGTTGATGGTGATGGTGCTG
CTGTTGCTGTTGCCGACAAATGGAAGGTGGGCGTCCTGGACGAGAAGGCT
TTGCGGCTGAAGGTGCAGCATGTCGTCGAGGCCCAACGTTACCTGCAAAA
GTAGGTTCTCGACAAGGTGCAGGCGAGTCGGAGTCAGCACCGAGCGTATG
CGCGTGTTGGGAGCCTATCTGAAATTGTGGTGGGGGACTACGTGTTGATG
GCACGCATTCGCCGGCGTGGGTTCACACCGAAAATTCTTATCACCTGGAG
GGGGCCGTGGAGCATTGTCGTCGCCGAGAGACCGCAAGTGTACGGAGTCC
AGAACATCGTGTCGGGCGAAGTTCGGAATGTCCACGTCGCGCGCGTGCGG
TTCAACGCCGATGCCGCTCTCGATTTCACGGCAGAGTTGAAGGAAGTTTG
TCAGCATGCTTTCGCGCGAGATTGTGGAAATGTTGGTGGCGGAAGACGGT
CCTGGGTTTGATGTGGAGGTGGAGGGGTTCGGTTTCGACAAGGAAGACAA
ACCTGGGAAAAGCTGCCAAAGGTCCGGGATGCCGTTTGTCAAATCCGGCC
TGCGGCGGCTGGGTTTTCCGAAAAAGGTTCGGGCTCAGTGGAAGCAACAA
TACGGCATTACCTTGTAAGTAATTCGTTTGAGTTGAGTGAAGGCCGTCTT
GTTTGTTTGCGTATGGCGTTTCTCCGCTAACTTCTCTTGAGTTTGTGCTT
CATTCGTTTGAGTTGAGTGAGGGCTATCCTGTCGAGTATTGATGGCATTT
CTTCGCTGACTGCTTGATGTACATTCTTCAGCATGCCGCGCATTTATTTG
GTTGTGGCGTGCCTGACTCTGGCATGTGTAGGTAGACCACTGTCAACCGC
GTTGCCTAGTGTTGGGGGTGCCTTGGCTAGTCTGATGGTTGCATGTGGTT
GAACTGCTTTGAGGCCGCCTTTGACACCGTGTTGGTGGCAGTTCTCTGCG
AGCTGCGTACGTTTTGAATTTGTAACGTTGATTGGCTTATTCGGCAATCA
TGTCGATCGTTGCACCATGGATATCGATATTTCGAGGAACTTCAATTCAA
CCTTGGAAGCGCCTCGCAACGGCTTTTGTTGTTTCTTTCATCGTTTTCCC
TGCGCGTTGCAAACGAACCCGCACGCTTCAAGTTGGTTGCGCCGTGTTGG
TCGTCTATCAACTACTTAAGTTTGCTTCTGTTTTCGAGCGCGCGGCCTTA
GCCAATCTATATAGTGTGATCGTCCGTCACCTGCGTGTTGTTGTCATTTG
TAGCGTCGCGTGCCTTTCATTGTTGAATGGGAGCATTCCACGCTTTACAT
GGGAGGTTGAACACTTGCGCTTACTAAAGAAATGGCATGGTACTCCGGCA
TGAGATCCCCATGTATCGCTGTTTATCATTCATGAAACACCGCTGTCGAT
TATCTTGAATATTTCCAAGTGCCTACTATCTGATGGGCATTGTGGATGCG
GTGCACCTGGGTAGCAGTAGTTCACGGTGAGGAGCCGACTTTGCATATCT
GCACGTCTAAGGTAAGGTAGATCGGGGTTTCAATTTGCCTGGTTGGCATG
TTTGAGGAGAGCGAGATTGATGATAGATAAAGAGAGAGAGACTCGTTCGT
GTGAAATAATACATCTTGCTACCATCACTCAGAAGGTACATCGACCAGCC
CCCCCCACCGAGGCCACGTGGGGAGAATTCTGGTCCTAGACCCTGCTTAT
TTTCAGTCGTGTCTACAGGTATCTTCTCTTTTACGACTTGGTATGAAGAA
GATACTTGCTCAATCACGTATCTTCTTCGTACATGTATCATACCCGAACA
ATAGGAAGCTAGGATCTCGTGGCATGTAGACTAGATTATACAGTCTACGC
AACAATCGAGGGAGAAACAGCTGAATCATTGTCGCTAAAATAATGAACGC
AAGCACCGCAAAAGGAAGGAAGATACTTCAACTCCTGTGTGATCCCGGAT
GGTACGTCCAGAATTGCTCCCT

Coding sequence (CDS) from alignment at Scaffold_519:219442..222613+

>EsuBft1007_6a-0001 ID=EsuBft1007_6a-0001|Name=EsuBft1007_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=426bp|location=Sequence derived from alignment at Scaffold_519:219442..222613+ (Ectocarpus subulatus male Bft15b)
ATGAGGGAAAATACCGCAGCCACCGAAAACGATGGGGGCGAAGAGAAATT
TGCACCAACCACCCCAACATCTCACGATCTCGGGCAACAGCAGGATAGGG
GATGGACTCATAAAGGAATCCAAGTGCCATATTTTGGCGGCGAGGAAGTA
TCGACAGACCGAGATGGAACAGCGGTGTTTCCACGTGGTGGTGGTGCAGA
GAAGGGTAGCACGGATAGCCCCGACAATGAACCAACGGAAAGCAGCATCA
GCGGCGATGGCGGCAAGTCTGATTCTGATCTTCCAGAAATCTTGGAACTC
CCTCCAGTTTGTGAAAGGGGTAGCCCACAGCGAGGGATGAATTTGCTAGG
ATCAATGGATGGGAGTTCACGAGGGACGGCGATACGACATACATCAATGC
CCCACCACACGTGTGGAGGAAACTGA