EsuBft1006_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1006_8a-0001
Unique NameEsuBft1006_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_472contigScaffold_472:41954..45805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LBB5
ProteomeIdEsuBft1006_8
Protein domainsIPR016024
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR011989
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length216
Hectar predicted targeting categoryother localisation
Evalue2.71e-208
EggNOG OGsKOG0392@1|root,KOG0392@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K15192
Descriptionhelicase activity
COG categoryL
BRITEko00000,ko01000,ko03021
Cross References
External references for this mRNA
DatabaseAccession
GO0005488
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_8aEsuBft1006_8aEctocarpus subulatus male Bft15bgeneScaffold_472 41954..45805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_8a-0001EsuBft1006_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_472 42447..45805 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_8a-0001-exonEsuBft1006_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_472 41954..42516 -
EsuBft1006_8a-0001-exonagat-exon-51643Ectocarpus subulatus male Bft15bexonScaffold_472 42676..43383 -
EsuBft1006_8a-0001-exonagat-exon-51646Ectocarpus subulatus male Bft15bexonScaffold_472 43877..44044 -
EsuBft1006_8a-0001-exonagat-exon-51645Ectocarpus subulatus male Bft15bexonScaffold_472 44365..44549 -
EsuBft1006_8a-0001-exonagat-exon-51647Ectocarpus subulatus male Bft15bexonScaffold_472 44784..45121 -
EsuBft1006_8a-0001-exonagat-exon-51644Ectocarpus subulatus male Bft15bexonScaffold_472 45601..45805 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_8a-0001-exonagat-three_prime_utr-55Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_472 41954..42446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_8a-0001-cdsEsuBft1006_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_472 42447..42516 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1006_8a-0001 ID=EsuBft1006_8a-0001|Name=EsuBft1006_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2167bp|location=Sequence derived from alignment at Scaffold_472:41954..45805- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCCCTGTGCGAGAGACTGCGGCTCAGCTACTCGCGGTGGCGGC
TCTCCAGCTGGAGGCCGACAAGCTGAGGCAGGCGGCCAGACTCCTCTTTG
AGCTCACGGCCTCGGGGGAGTGGCAGGCAAGGCACGGCGGGTTCTGCAGC
CTGGAGTCTCTCTGCGCTGTGGCCATCACTGGAGATGGCGCCGACGGCAG
AGGCGCTCCGCCGGAGGTGTCCGCCTTCCTGCACGGCCTCGTGTACCGCG
CGGCCCCTCGCGGCCTCTCCGACCCAGCCGAAGACGTCTGCGCCGCCGCC
GCTCGGACCGTCCGCCTTGTCATGCGACGGTTTTTGCCTCCGGTTGAAGC
CGGGAGGGACAACAACGGCGGCGAGGCAAGGTTAGCGTTGGCACCCGCAG
GCCGGCAACGGCAGGAGCGAGGGCCGACCGGCGACGCGAAGGGAGAGGCG
GAGGTGTTGAGGAGCTGCGGTGGAGGCGGAGAGGTTTTTGACCTGGTTTG
GAAGGCGTTAGAGGACCTGGATCAGGACTCAACCTGCGTCGAGGATCTTG
CGGATCTCCTGGAGACGTGCTGTGAGGACGTGGGCCGGGCTAGCGGAGCC
ACCGATCCCTTTCTCTCGTCCGGCGAACGCCGCCTCAACCGCCTCCTCGA
CCTCTGGGAGGATGTCCGCGCGGGGGTGCGGGCGTGCGCTGTGCGGTCGT
TGCTGGCACTTGCGCAGGGAATCGTTGGAGCTACTCGGCCAGTGGCGAAA
ACGCAAAGCGCGGGGGAGTCGGCTGCTGCTACGAGCTGCGAGAGGCTGCT
GCTGCGATGCTTCCAAGCGCTACTCTCCGAGCGGGATGACGGAGTCCGGG
AACATTCCGCGCGGCTCTGGAGCGAGCTGCTGAAGGGACTTGGGCGCGCC
GATGGCCACCGCGGAGCGGCCCACGCGTCGCTCATGGCCTCTTGCCTTGG
TGTGCTCTTCACACCGCCGGCAACGCGGCCACCGCCTACTACGGCGATGG
AAGACGTCACTACTGCTGCCACTGCGGATTCGGCCGCCTCGCCATCATCA
GCTTCTACCAGACCCGCACGCCGGCCGTCGAAGCGCGCTCGCGGCGAAAC
TTCCGGCAGACCCGAAGACGCCTCCGCCGCACGTCCCCCTTCGAAGCACC
AGCAACGAGCTGTTCAGACAGATACGACTGTAGAAGGACCGGTGGGGGCA
GGGGCGTCGGCGACGTTTTTGGGGCGGTTAGCATCCGCCGGGGCACTGGC
GGAGCTCGCCCGAGCTTCTGCTACCGCGGCGGCCGACGGCGAAGAAGCAG
CAGCACGCGGCGATTATGCTTCGGCCACCGGAAAGACAGGGTCACCAGGG
TGTCGCGGAAGCAGCAGCGGCAAGCGTGCGCGGGCTGCGTCGGACGGACA
CCGTAGCGCGTCCGACGGCGAGACGGAGGGCGTCGTCGCCGCCAAGAAGA
CGGCGCAGGAGTTGGTCATGTCCGAGGTGGCGAGAAGAGCGGGGTCGGGG
TGGGCGTGGGAGCAAGAGCTGGCCTTCTTTCTGATGGAGGCATGCTGTGC
CGGTGGTGGGGTGGGTGCCCGGGGTGGAAGCGGCGGCGGATCGGCGAGCA
CACGGCAGAACGGCGAAGGATGGAATGCGGCGACAATGACGCCGAATCGA
AGAGAACAAGGCCTGGCGGCGTGATATATACGCGGAAATCTACTGTTGAC
ACTGCTGTGTGGGGGCATGGAAGAGAGGCTAAGATAATGTCCCTCGCGCG
ACTTAACCCATCGCCCACCAAAGCGACGAAAGGGTGCTTCCCCCAGTACC
ACCACACAAGCCGTTGCAGCCAAATCTACTCTGTGTTACTGCGCCGGTCC
ATGGACACCAGCCCACGCACCGCAGTAGCATCATCAGCCAGGCATCGCCC
TGCTCGAGCAAGCCCCAAGAACATCGACATGTCATACTCACACCCGCCCG
CCAACTTCACATGGCCTTTGCCCGTTTGGCCTATGCCCCCGTGTGCCTCA
TGGATATCTATGCGTATCACTGTGCGCTCACCGCTGCCTGTTAACAGCTA
GCGCTCTCTGTTATGCTGTGGAACCACACGCAACGTCACATCGCACGTAC
CAAAGTAGTCGACGCTTCGCCGAGAACGGTGGATCGACTCCTTCGCCCAG
ATTCTTGGTCTTCGCCC
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protein sequence of EsuBft1006_8a-0001

>EsuBft1006_8 ID=EsuBft1006_8|Name=EsuBft1006_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=557bp
MVAPVRETAAQLLAVAALQLEADKLRQAARLLFELTASGEWQARHGGFCS
LESLCAVAITGDGADGRGAPPEVSAFLHGLVYRAAPRGLSDPAEDVCAAA
ARTVRLVMRRFLPPVEAGRDNNGGEARLALAPAGRQRQERGPTGDAKGEA
EVLRSCGGGGEVFDLVWKALEDLDQDSTCVEDLADLLETCCEDVGRASGA
TDPFLSSGERRLNRLLDLWEDVRAGVRACAVRSLLALAQGIVGATRPVAK
TQSAGESAAATSCERLLLRCFQALLSERDDGVREHSARLWSELLKGLGRA
DGHRGAAHASLMASCLGVLFTPPATRPPPTTAMEDVTTAATADSAASPSS
ASTRPARRPSKRARGETSGRPEDASAARPPSKHQQRAVQTDTTVEGPVGA
GASATFLGRLASAGALAELARASATAAADGEEAAARGDYASATGKTGSPG
CRGSSSGKRARAASDGHRSASDGETEGVVAAKKTAQELVMSEVARRAGSG
WAWEQELAFFLMEACCAGGGVGARGGSGGGSASTRQNGEGWNAATMTPNR
REQGLAA
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mRNA from alignment at Scaffold_472:41954..45805-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1006_8a-0001 ID=EsuBft1006_8a-0001|Name=EsuBft1006_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3852bp|location=Sequence derived from alignment at Scaffold_472:41954..45805- (Ectocarpus subulatus male Bft15b)
ATGGTTGCCCCTGTGCGAGAGACTGCGGCTCAGCTACTCGCGGTGGCGGC
TCTCCAGCTGGAGGCCGACAAGCTGAGGCAGGCGGCCAGACTCCTCTTTG
AGCTCACGGCCTCGGGGGAGTGGCAGGCAAGGCACGGCGGGTTCTGCAGC
CTGGAGTCTCTCTGCGCTGTGGCCATCACTGGAGATGGCGCCGACGGCAG
AGGCGGTGAGACGGAATGCGCAGCGATTGTTTGTCGCGGTTTGGGAAGAG
GCCGGGGGGGGGGGCAGGCTGAGAGGAAAGTGGCCCGGGGGTGTTCCGAT
TTTGATACTCACGGCACATTCCTTTTTGGTTTTAGAGATACCGTGTTAAT
GTTATTTCCGTACAGAAACAAAACAAAAACATCTCTTATCCACAGAAAGG
AGCATGGGATGTATTTGCGATGAGTTCATAGTGCTTTGAATTCTTGACAG
GAAATAGGTCCCAACCATGCTTTTCCCTGCCCGAGTCACCCTTTCTTATT
TTGTTTTCGCCATCTCCATCCCCCCCCCTTCTCCCCGTGGCCCTCCCCAC
ACGCCCGCCTGCCCGGCTTTCGGCCTGCTCTACCTGTCTGTCCCCACGTG
CCCGGTCTGCGTGTTAATCACTCGTCGTGCTCTTGTTATCGTTCTTACCC
CGCGATTACTCTATGGTGCGCCCGAGGGTCTCAGCTCCGCCGGAGGTGTC
CGCCTTCCTGCACGGCCTCGTGTACCGCGCGGCCCCTCGCGGCCTCTCCG
ACCCAGCCGAAGACGTCTGCGCCGCCGCCGCTCGGACCGTCCGCCTTGTC
ATGCGACGGTTTTTGCCTCCGGTTGAAGCCGGGAGGGACAACAACGGCGG
CGAGGCAAGGTTAGCGTTGGCACCCGCAGGCCGGCAACGGCAGGAGCGAG
GGCCGACCGGCGACGCGAAGGGAGAGGCGGAGGTGTTGAGGAGCTGCGGT
GGAGGCGGAGAGGTTTTTGACCTGGTTTGGAAGGCGTTAGAGGACCTGGA
TCAGGACTCAACCTGCGTCGAGGTACGTGCCGACCGAGTTTGCTGTATTT
GCATGACGTCATGTTATTTTACGAAGGCACTACATGTTTGTTGCTTTTCC
AGTCTCACATGTACGCACACGGAGCTTTCGGAAACTAACTACTGCTTTTC
AATACCTCTCTGGCCTCTCCCGCAACCCTTCCCGCCGTCCGTCCGTCCCG
ACCTCGAACGTACCGGATGTCCCTTTTCCACCGCTCTCCCGTTTTGATCT
GTTCAGGATCTTGCGGATCTCCTGGAGACGTGCTGTGAGGACGTGGGCCG
GGCTAGCGGAGCCACCGATCCCTTTCTCTCGTCCGGCGAACGCCGCCTCA
ACCGCCTCCTCGACCTCTGGGAGGATGTCCGCGCGGGGGTGCGGGCGTGC
GCTGTGCGGTCGTTGCTGGCACTTGCGCAGGGAATCGTTGGGTGAGGTTT
GGTTCTGGATGTACGGCTACCGCACCCGGCGTGTTGATGCGCAGCAAATA
TGACAGTCTCTGGTGTATTGCTTACGTGTTGTGTCGTGTGCCACGGTGGT
GTTTCACCATGAACCTCGCATATGACCAACAACACACAAAGTCATGGAGG
CTAATGGTGCTGTTTTCAGCCTTGGAACTTTCCGCGGAAGAATCGGTCAG
GACTTTGCCAACGTTAACCGCGCACACGGGCTACTGCCGATCCAGAGCTA
TCTGCGCGTTCAACGTCCGGCTTTTTTTCTGAACGGGCACACGATTTGCT
TACCTCTTCAGAGCTACTCGGCCAGTGGCGAAAACGCAAAGCGCGGGGGA
GTCGGCTGCTGCTACGAGCTGCGAGAGGCTGCTGCTGCGATGCTTCCAAG
CGCTACTCTCCGAGCGGGATGACGGAGTCCGGGAACATTCCGCGCGGCTC
TGGAGCGAGCTGCTGAAGGGACTTGGGCGGTAAGGAGCCCCGCCGCTTTT
TGGAAGTGTAACTGCTGTTTTGGCTCATCATCTTTGAACGGGTCAGTGTT
GACCAAAAATGCACGCGGTTTATTTGATGTTATCCCTGTGGTACACCGCG
GCGCTTGGAGACGACGACGCAGAGGCGATGCCCCGTTCGTTCAGGCCCGA
GAGGCGCGGGCGCGACCAATTTTTAAGAACGGGCGAGAAAGAAGGTTGGA
AGAAAACGCGGCACGTACATGGAAGTGGCGCGTAAGAGACAAGTCCGTCG
TGACGAAATTTCCACTCTCACGACCACCTTAACGACAAGTACCCTACTCA
TGGATGGTCAAATATGAAATTCTACCATGAACAAGAGCACACCAAGTTAC
GAACGTTTTGGCAGTGAACATTTCATGGAGCCATGGGCTTTGAGCTACAA
CATGACGCCCACTGGCTTGAGTCACTTCCGTCGTCCTTGTACGCAACGCG
CACCTACGCGTACTTGAACCAGCGCCGATGGCCACCGCGGAGCGGCCCAC
GCGTCGCTCATGGCCTCTTGCCTTGGTGTGCTCTTCACACCGCCGGCAAC
GCGGCCACCGCCTACTACGGCGATGGAAGACGTCACTACTGCTGCCACTG
CGGATTCGGCCGCCTCGCCATCATCAGCTTCTACCAGACCCGCACGCCGG
CCGTCGAAGCGCGCTCGCGGCGAAACTTCCGGCAGACCCGAAGACGCCTC
CGCCGCACGTCCCCCTTCGAAGCACCAGCAACGAGCTGTTCAGACAGATA
CGACTGTAGAAGGACCGGTGGGGGCAGGGGCGTCGGCGACGTTTTTGGGG
CGGTTAGCATCCGCCGGGGCACTGGCGGAGCTCGCCCGAGCTTCTGCTAC
CGCGGCGGCCGACGGCGAAGAAGCAGCAGCACGCGGCGATTATGCTTCGG
CCACCGGAAAGACAGGGTCACCAGGGTGTCGCGGAAGCAGCAGCGGCAAG
CGTGCGCGGGCTGCGTCGGACGGACACCGTAGCGCGTCCGACGGCGAGAC
GGAGGGCGTCGTCGCCGCCAAGAAGACGGCGCAGGAGTTGGTCATGTCCG
AGGTGGCGAGAAGAGCGGGGTCGGGGTGGGCGTGGGAGCAAGAGCTGGCC
TTCTTTCTGATGGAGGCATGCTGTGCCGGTGGTGGGGTGGGTGCCCGGGG
TGGAAGCGGCGGCGGATCGGCGAGCACACGGTGAGTCGCGATCGCAGGCC
CTTTGTTTGTGGTGTTCCATCAATCAGTCTTCGCGTCTAGTCGATGCCGC
TCTTGGTGCGAGCTTCTTGCAGCGACAAACGGACGGGGGGGGGGGGGGGG
TTTNGGGGGGGGTTCTTTTTTCCACCGGGGTCGGTTCAGGCAGAACGGCG
AAGGATGGAATGCGGCGACAATGACGCCGAATCGAAGAGAACAAGGCCTG
GCGGCGTGATATATACGCGGAAATCTACTGTTGACACTGCTGTGTGGGGG
CATGGAAGAGAGGCTAAGATAATGTCCCTCGCGCGACTTAACCCATCGCC
CACCAAAGCGACGAAAGGGTGCTTCCCCCAGTACCACCACACAAGCCGTT
GCAGCCAAATCTACTCTGTGTTACTGCGCCGGTCCATGGACACCAGCCCA
CGCACCGCAGTAGCATCATCAGCCAGGCATCGCCCTGCTCGAGCAAGCCC
CAAGAACATCGACATGTCATACTCACACCCGCCCGCCAACTTCACATGGC
CTTTGCCCGTTTGGCCTATGCCCCCGTGTGCCTCATGGATATCTATGCGT
ATCACTGTGCGCTCACCGCTGCCTGTTAACAGCTAGCGCTCTCTGTTATG
CTGTGGAACCACACGCAACGTCACATCGCACGTACCAAAGTAGTCGACGC
TTCGCCGAGAACGGTGGATCGACTCCTTCGCCCAGATTCTTGGTCTTCGC
CC
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Coding sequence (CDS) from alignment at Scaffold_472:41954..45805-

>EsuBft1006_8a-0001 ID=EsuBft1006_8a-0001|Name=EsuBft1006_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1674bp|location=Sequence derived from alignment at Scaffold_472:41954..45805- (Ectocarpus subulatus male Bft15b)
ATGGTTGCCCCTGTGCGAGAGACTGCGGCTCAGCTACTCGCGGTGGCGGC
TCTCCAGCTGGAGGCCGACAAGCTGAGGCAGGCGGCCAGACTCCTCTTTG
AGCTCACGGCCTCGGGGGAGTGGCAGGCAAGGCACGGCGGGTTCTGCAGC
CTGGAGTCTCTCTGCGCTGTGGCCATCACTGGAGATGGCGCCGACGGCAG
AGGCGCTCCGCCGGAGGTGTCCGCCTTCCTGCACGGCCTCGTGTACCGCG
CGGCCCCTCGCGGCCTCTCCGACCCAGCCGAAGACGTCTGCGCCGCCGCC
GCTCGGACCGTCCGCCTTGTCATGCGACGGTTTTTGCCTCCGGTTGAAGC
CGGGAGGGACAACAACGGCGGCGAGGCAAGGTTAGCGTTGGCACCCGCAG
GCCGGCAACGGCAGGAGCGAGGGCCGACCGGCGACGCGAAGGGAGAGGCG
GAGGTGTTGAGGAGCTGCGGTGGAGGCGGAGAGGTTTTTGACCTGGTTTG
GAAGGCGTTAGAGGACCTGGATCAGGACTCAACCTGCGTCGAGGATCTTG
CGGATCTCCTGGAGACGTGCTGTGAGGACGTGGGCCGGGCTAGCGGAGCC
ACCGATCCCTTTCTCTCGTCCGGCGAACGCCGCCTCAACCGCCTCCTCGA
CCTCTGGGAGGATGTCCGCGCGGGGGTGCGGGCGTGCGCTGTGCGGTCGT
TGCTGGCACTTGCGCAGGGAATCGTTGGAGCTACTCGGCCAGTGGCGAAA
ACGCAAAGCGCGGGGGAGTCGGCTGCTGCTACGAGCTGCGAGAGGCTGCT
GCTGCGATGCTTCCAAGCGCTACTCTCCGAGCGGGATGACGGAGTCCGGG
AACATTCCGCGCGGCTCTGGAGCGAGCTGCTGAAGGGACTTGGGCGCGCC
GATGGCCACCGCGGAGCGGCCCACGCGTCGCTCATGGCCTCTTGCCTTGG
TGTGCTCTTCACACCGCCGGCAACGCGGCCACCGCCTACTACGGCGATGG
AAGACGTCACTACTGCTGCCACTGCGGATTCGGCCGCCTCGCCATCATCA
GCTTCTACCAGACCCGCACGCCGGCCGTCGAAGCGCGCTCGCGGCGAAAC
TTCCGGCAGACCCGAAGACGCCTCCGCCGCACGTCCCCCTTCGAAGCACC
AGCAACGAGCTGTTCAGACAGATACGACTGTAGAAGGACCGGTGGGGGCA
GGGGCGTCGGCGACGTTTTTGGGGCGGTTAGCATCCGCCGGGGCACTGGC
GGAGCTCGCCCGAGCTTCTGCTACCGCGGCGGCCGACGGCGAAGAAGCAG
CAGCACGCGGCGATTATGCTTCGGCCACCGGAAAGACAGGGTCACCAGGG
TGTCGCGGAAGCAGCAGCGGCAAGCGTGCGCGGGCTGCGTCGGACGGACA
CCGTAGCGCGTCCGACGGCGAGACGGAGGGCGTCGTCGCCGCCAAGAAGA
CGGCGCAGGAGTTGGTCATGTCCGAGGTGGCGAGAAGAGCGGGGTCGGGG
TGGGCGTGGGAGCAAGAGCTGGCCTTCTTTCTGATGGAGGCATGCTGTGC
CGGTGGTGGGGTGGGTGCCCGGGGTGGAAGCGGCGGCGGATCGGCGAGCA
CACGGCAGAACGGCGAAGGATGGAATGCGGCGACAATGACGCCGAATCGA
AGAGAACAAGGCCTGGCGGCGTGA
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