EsuBft1006_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1006_6a-0001
Unique NameEsuBft1006_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_472contigScaffold_472:61364..63536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1006_6
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length130
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_6aEsuBft1006_6aEctocarpus subulatus male Bft15bgeneScaffold_472 61364..63536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_6a-0001EsuBft1006_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_472 61385..63466 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_6a-0001-exonagat-exon-51639Ectocarpus subulatus male Bft15bexonScaffold_472 61364..61719 -
EsuBft1006_6a-0001-exonagat-exon-51641Ectocarpus subulatus male Bft15bexonScaffold_472 62120..62258 -
EsuBft1006_6a-0001-exonagat-exon-51640Ectocarpus subulatus male Bft15bexonScaffold_472 62303..62670 -
EsuBft1006_6a-0001-exonEsuBft1006_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_472 63097..63536 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_6a-0001-exonagat-three_prime_utr-54Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_472 61364..61384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_6a-0001-cdsEsuBft1006_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_472 61385..61719 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_6a-0001-exonagat-five_prime_utr-29Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_472 63467..63536 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1006_6a-0001 ID=EsuBft1006_6a-0001|Name=EsuBft1006_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1303bp|location=Sequence derived from alignment at Scaffold_472:61364..63536- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTCTCGAGTGCGACCCGGAGTGGTTGTTTCTGCGTTTGTATTGACGACA
GGAAGGTCACCCCGGCGGCGATGCAGGAGGCCCGCCGCCTGTTGGAGAAC
CCCCGCGAGTTGCACGGTCTCCGGAACAAGGCTCTGGACCACCCCCGAGT
CTGCCGGGGCACCAGATCGGCGGAGGACCTCGACCGCCAACAGCTCCGCA
ACCTGGCCGCCACCCTACCCGACAACGGCCTTGTCAAAATCCTCAGGTTC
TCCCTCGGCGACCTTGCGGGCGCTAGAGAGAGCGTGTGCCGAGGCGGAGC
TGCAGGGGCCGGTGGAGTTGAGCAAATTCGTCGGCGACCGGGGTGTCGAT
GCGCCGGTAGTTCACGACCTCCCGGCGTTCGCCGGCGACCCGGCTGCCTG
GACAGCTCCGATCCTCTTGGAAGCAGGGGATGTGCCTTCAGAGCTGGCGT
CGGTTGGGAGGCGGAAGGCGTTTCGTCTACTGGGGCCGCCCACCAGAGCA
CGGCTCTCCGCGACGCCAAAGCTCTGGAGAGCACCGCGCGGGGGGACCTG
GAGCTGCATCGAGCATGCCCCAACGGGGGAACGGTCACCGACACGCGCGT
CGGCGAGATGATGCTGGATTTTCTATGCGAAGCGATCGAGATTCACGCCG
CGGCGAACGGAGGGCCTACGGTGAACGGCATGCGGCGGTGTGACGAGCTG
GAGGAGGCGCGCGACCAGGGCTTCCCCAAATCCGCGAGGTGGCGGGGCGC
GTGGGGCGGGAGGTTCGGGGCAAAAACGTCCGGACCCGAGACAACTGCGC
CGCTGGAGGTGAACGGCATCCGGCGATGTGACGAGCTGGAGGAGGCGCAC
GACCAGGGGCTTCTCGAAATCCGCGAGGTGGCGGGGCGCGTGGGGCGGGA
GGTTCGGGGCCAACACGTCCGGACCCGAGACGACTGCGCCGCTGGAAGTA
ACGCAAGCTGGACCGGCCGCTCGCAGGGGGTCAACGAGGAGGAGGCCGAG
GCAGCCAAGCGGGAGGCTAAGGCGGTCCATGCTCCGGCGCCGGAGGAGGA
GAAAGCCAAAACGGCGCAAGCCTTTGGAGCAGCGACCAACCGCGTGGAGA
TGGCCAAGACCGCCAAGAAGTGCCGGGGCACGGGCGGTAAGATTGCCGCC
GGCGTTGCATTCGTTCGGACCGGGATCCTATTCGTTGTGCATATGCTGTT
GCTGCTGTTCTGGGTCGTTGATGTTGATGATGTTAATGATGATGATGCTA
AGAGGGCCTTGCTCAAGAACGATTTCGGTTGACTCCTTGCACCAGACCGC
CCC
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protein sequence of EsuBft1006_6a-0001

>EsuBft1006_6 ID=EsuBft1006_6|Name=EsuBft1006_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=403bp
MQEARRLLENPRELHGLRNKALDHPRVCRGTRSAEDLDRQQLRNLAATLP
DNGLVKILRFSLGDLAGARESVCRGGAAGAGGVEQIRRRPGCRCAGSSRP
PGVRRRPGCLDSSDPLGSRGCAFRAGVGWEAEGVSSTGAAHQSTALRDAK
ALESTARGDLELHRACPNGGTVTDTRVGEMMLDFLCEAIEIHAAANGGPT
VNGMRRCDELEEARDQGFPKSARWRGAWGGRFGAKTSGPETTAPLEVNGI
RRCDELEEAHDQGLLEIREVAGRVGREVRGQHVRTRDDCAAGSNASWTGR
SQGVNEEEAEAAKREAKAVHAPAPEEEKAKTAQAFGAATNRVEMAKTAKK
CRGTGGKIAAGVAFVRTGILFVVHMLLLLFWVVDVDDVNDDDAKRALLKN
DFG
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mRNA from alignment at Scaffold_472:61364..63536-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1006_6a-0001 ID=EsuBft1006_6a-0001|Name=EsuBft1006_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2173bp|location=Sequence derived from alignment at Scaffold_472:61364..63536- (Ectocarpus subulatus male Bft15b)
TCTCTCGAGTGCGACCCGGAGTGGTTGTTTCTGCGTTTGTATTGACGACA
GGAAGGTCACCCCGGCGGCGATGCAGGAGGCCCGCCGCCTGTTGGAGAAC
CCCCGCGAGTTGCACGGTCTCCGGAACAAGGCTCTGGACCACCCCCGAGT
CTGCCGGGGCACCAGATCGGCGGAGGACCTCGACCGCCAACAGCTCCGCA
ACCTGGCCGCCACCCTACCCGACAACGGCCTTGTCAAAATCCTCAGGTTC
TCCCTCGGCGACCTTGCGGGCGCTAGAGAGAGCGTGTGCCGAGGCGGAGC
TGCAGGGGCCGGTGGAGTTGAGCAAATTCGTCGGCGACCGGGGTGTCGAT
GCGCCGGTAGTTCACGACCTCCCGGCGTTCGCCGGCGACCCGGCTGCCTG
GACAGCTCCGATCCTCTTGGAAGCAGGGGATGTGCCTTCAGTATCAGAGG
CGCGCGTTCCTACCACAATGAACCCATCGCCACCACCACACCAGTGGGAA
GGTGTCCCAAGCGGCCAGCAACGTCTCGTCCTTCGAGGGTGGGTCGGTCG
ACACTGTTCCAGTGTCGGTCCCGCGCCCAGCCTGGGCGATGTCCCCACCA
CCTGTACACCCCGACACCAGGAGCCGCGGTGAAGTAGTGAAGGAAAGACC
GAGCCCGGACGAGCGTGCGACCACTACGGCTGCTTGACGGAATTCGAGGC
GTAGCTGTGACAGCGCAGCGCAGTGGGGGGTCGCGGACACCGAGGACTCG
TTCCGATCCCCCTCCACCTCCACGCAGGATGCCCCCAGTCGTTTTTCGTG
CCCGGCCGGTCCACCCTCGAAGACGAGACGTTGCTGGCCGCTTGGGACAT
CTTCACGGTCGTGCAGGAGCTGGCGTCGGTTGGGAGGCGGAAGGCGTTTC
GTCTACTGGGGCCGCCCACCAGAGCACGGCTCTCCGCGACGCCAAAGCTC
TGGAGAGCACCGCGCGGGGGGACCTGGAGCTGCATCGAGCATGCCCCAAC
GGGGGAACGGTCACCGACACGCGCGTCGGCGAGATGATGCTGGATTTTCT
ATGCGAAGCGATCGAGATTCACGCCGCGGCGAACGGAGGGCCTACGGTGA
ACGGCATGCGGCGGTGTGACGAGCTGGAGGAGGCGCGCGACCAGGGCTTC
CCCAAATCCGCGAGGTGGCGGGGCGCGTGGGGCGGGAGGTTCGGGGCAAA
AACGTCCGGACCCGAGACAACTGCGCCGCTGGAGGTATGTACGTATAGCA
GTTGGTATATCGGAGCANCGGGCCTAAGGTGAACGGCATCCGGCGATGTG
ACGAGCTGGAGGAGGCGCACGACCAGGGGCTTCTCGAAATCCGCGAGGTG
GCGGGGCGCGTGGGGCGGGAGGTTCGGGGCCAACACGTCCGGACCCGAGA
CGACTGCGCCGCTGGAAGTATGTACGTATAGCAGTCGGTATCTCGGAGCA
ACCGACGGTTTGTTGCTCCTGTTGCTGCTGATGTTGTTGTTGTTGATGTT
GTTGATGTTGTTGTTGATGATGATGATTGAACGGCCTTGTTCGAGATCGA
TTCTCGCATAGCTCCAAAGATAGGACTAGGTCGTGGTGGCGCCAACCTCT
GCGTTACCCCGCTCACCGCCGCCCCGTCCGCCCCGCCCCCACTGCCCCTC
TTGTGTTTTCGATTGGCGGCGGTTTGGTTGAAACGTTATCAAGTAGGTGT
CGGTGTGGAGGATTGTCGTTGTTGCTGCCGTCTATTTCCTTGTTTGTTTC
TGCGTTAAGGATTGCTCTCGTTTCTCCTTGTTCGGTCTTCGTCTGCGCCA
TGCATCCAAACCCGTAGGTAACGCAAGCTGGACCGGCCGCTCGCAGGGGG
TCAACGAGGAGGAGGCCGAGGCAGCCAAGCGGGAGGCTAAGGCGGTCCAT
GCTCCGGCGCCGGAGGAGGAGAAAGCCAAAACGGCGCAAGCCTTTGGAGC
AGCGACCAACCGCGTGGAGATGGCCAAGACCGCCAAGAAGTGCCGGGGCA
CGGGCGGTAAGATTGCCGCCGGCGTTGCATTCGTTCGGACCGGGATCCTA
TTCGTTGTGCATATGCTGTTGCTGCTGTTCTGGGTCGTTGATGTTGATGA
TGTTAATGATGATGATGCTAAGAGGGCCTTGCTCAAGAACGATTTCGGTT
GACTCCTTGCACCAGACCGCCCC
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Coding sequence (CDS) from alignment at Scaffold_472:61364..63536-

>EsuBft1006_6a-0001 ID=EsuBft1006_6a-0001|Name=EsuBft1006_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1212bp|location=Sequence derived from alignment at Scaffold_472:61364..63536- (Ectocarpus subulatus male Bft15b)
ATGCAGGAGGCCCGCCGCCTGTTGGAGAACCCCCGCGAGTTGCACGGTCT
CCGGAACAAGGCTCTGGACCACCCCCGAGTCTGCCGGGGCACCAGATCGG
CGGAGGACCTCGACCGCCAACAGCTCCGCAACCTGGCCGCCACCCTACCC
GACAACGGCCTTGTCAAAATCCTCAGGTTCTCCCTCGGCGACCTTGCGGG
CGCTAGAGAGAGCGTGTGCCGAGGCGGAGCTGCAGGGGCCGGTGGAGTTG
AGCAAATTCGTCGGCGACCGGGGTGTCGATGCGCCGGTAGTTCACGACCT
CCCGGCGTTCGCCGGCGACCCGGCTGCCTGGACAGCTCCGATCCTCTTGG
AAGCAGGGGATGTGCCTTCAGAGCTGGCGTCGGTTGGGAGGCGGAAGGCG
TTTCGTCTACTGGGGCCGCCCACCAGAGCACGGCTCTCCGCGACGCCAAA
GCTCTGGAGAGCACCGCGCGGGGGGACCTGGAGCTGCATCGAGCATGCCC
CAACGGGGGAACGGTCACCGACACGCGCGTCGGCGAGATGATGCTGGATT
TTCTATGCGAAGCGATCGAGATTCACGCCGCGGCGAACGGAGGGCCTACG
GTGAACGGCATGCGGCGGTGTGACGAGCTGGAGGAGGCGCGCGACCAGGG
CTTCCCCAAATCCGCGAGGTGGCGGGGCGCGTGGGGCGGGAGGTTCGGGG
CAAAAACGTCCGGACCCGAGACAACTGCGCCGCTGGAGGTGAACGGCATC
CGGCGATGTGACGAGCTGGAGGAGGCGCACGACCAGGGGCTTCTCGAAAT
CCGCGAGGTGGCGGGGCGCGTGGGGCGGGAGGTTCGGGGCCAACACGTCC
GGACCCGAGACGACTGCGCCGCTGGAAGTAACGCAAGCTGGACCGGCCGC
TCGCAGGGGGTCAACGAGGAGGAGGCCGAGGCAGCCAAGCGGGAGGCTAA
GGCGGTCCATGCTCCGGCGCCGGAGGAGGAGAAAGCCAAAACGGCGCAAG
CCTTTGGAGCAGCGACCAACCGCGTGGAGATGGCCAAGACCGCCAAGAAG
TGCCGGGGCACGGGCGGTAAGATTGCCGCCGGCGTTGCATTCGTTCGGAC
CGGGATCCTATTCGTTGTGCATATGCTGTTGCTGCTGTTCTGGGTCGTTG
ATGTTGATGATGTTAATGATGATGATGCTAAGAGGGCCTTGCTCAAGAAC
GATTTCGGTTGA
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