EsuBft1005_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1005_9a-0001
Unique NameEsuBft1005_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:195755..196345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1005_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length55
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_9aEsuBft1005_9aEctocarpus subulatus male Bft15bgeneScaffold_576 195755..196345 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_9a-0001-exonEsuBft1005_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 195755..196032 +
EsuBft1005_9a-0001-exonagat-exon-70909Ectocarpus subulatus male Bft15bexonScaffold_576 196074..196345 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_9a-0001-exonagat-five_prime_utr-24Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_576 195755..195863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_9a-0001-cdsEsuBft1005_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 195864..196032 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_9a-0001-exonagat-three_prime_utr-46Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 196091..196345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_9a-0001EsuBft1005_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 195864..196090 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1005_9a-0001 ID=EsuBft1005_9a-0001|Name=EsuBft1005_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=550bp|location=Sequence derived from alignment at Scaffold_576:195755..196345+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACCCTCCCAAAAAAATACATCGAGTTCCGCGCCATTCGGCAGCAGGAGGC
GCGCTGCGCGAAAGCTGAATCAGAACAAAACGAGGTTTAAAGAGAGGACG
GGGTAGTGTATGGTTGCCGCGTCGGCAGACGATAACACTCGGCGCGCTAT
CGAACGCGGCAGCCTCACCGTTGTAGAGAAAACGCTGGAAGAAACGAAAG
AGTTGGTCAAAAGTAAGAAAATTGTGGAAGAGAGCCAGGCTCAACCTCGC
TGCCGCCGCCGCCGCTGCTGCTGCTGCTGTGTCTGCGTGGCTTAACCACC
CGGCTGCTGCTCGGGTGTGTCATGAGGCATGTGTTCTAGAGTGGGATCGT
GCAAAGGTGTTGTGTTGTGTCCCACAGCAGGGCACATCAGAGCACGCACA
CGAGCGGCGCCCTCGCGCGTGCGCGTCAGGTGTTTTTAGGGAGCTTTCGG
ACCGTTCCGTGCAATTTTTTTGGTCAGTCGATTTTCCATCAGGAAGATCC
GAGGTCACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft1005_9a-0001

>EsuBft1005_9 ID=EsuBft1005_9|Name=EsuBft1005_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=61bp
MVAASADDNTRRAIERGSLTVVEKTLEETKELVKSKKIVEESQAQPRCRR
RRCCCCCVCVA
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mRNA from alignment at Scaffold_576:195755..196345+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1005_9a-0001 ID=EsuBft1005_9a-0001|Name=EsuBft1005_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=591bp|location=Sequence derived from alignment at Scaffold_576:195755..196345+ (Ectocarpus subulatus male Bft15b)
ACCCTCCCAAAAAAATACATCGAGTTCCGCGCCATTCGGCAGCAGGAGGC
GCGCTGCGCGAAAGCTGAATCAGAACAAAACGAGGTTTAAAGAGAGGACG
GGGTAGTGTATGGTTGCCGCGTCGGCAGACGATAACACTCGGCGCGCTAT
CGAACGCGGCAGCCTCACCGTTGTAGAGAAAACGCTGGAAGAAACGAAAG
AGTTGGTCAAAAGTAAGAAAATTGTGGAAGAGAGCCAGGCTCAACCTCGC
TGCCGCCGCCGCCGCTGCTGCTGCTGCTGTTTTTTTCAGCAGCAGCAGCG
GCGGCGGCAGCGGCGGCAGGTGTCTGCGTGGCTTAACCACCCGGCTGCTG
CTCGGGTGTGTCATGAGGCATGTGTTCTAGAGTGGGATCGTGCAAAGGTG
TTGTGTTGTGTCCCACAGCAGGGCACATCAGAGCACGCACACGAGCGGCG
CCCTCGCGCGTGCGCGTCAGGTGTTTTTAGGGAGCTTTCGGACCGTTCCG
TGCAATTTTTTTGGTCAGTCGATTTTCCATCAGGAAGATCCGAGGTCACT
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_576:195755..196345+

>EsuBft1005_9a-0001 ID=EsuBft1005_9a-0001|Name=EsuBft1005_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_576:195755..196345+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCCGCGTCGGCAGACGATAACACTCGGCGCGCTATCGAACGCGG
CAGCCTCACCGTTGTAGAGAAAACGCTGGAAGAAACGAAAGAGTTGGTCA
AAAGTAAGAAAATTGTGGAAGAGAGCCAGGCTCAACCTCGCTGCCGCCGC
CGCCGCTGCTGCTGCTGCTGTGTCTGCGTGGCTTAA
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