EsuBft1005_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1005_3a-0001
Unique NameEsuBft1005_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:256765..259458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FWK2
ProteomeIdEsuBft1005_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length115
Hectar predicted targeting categoryother localisation
Evalue1.96e-97
EggNOG OGs2CNI7@1|root,2QWH7@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_3aEsuBft1005_3aEctocarpus subulatus male Bft15bgeneScaffold_576 256765..259458 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_3a-0001-exonEsuBft1005_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 256765..257021 +
EsuBft1005_3a-0001-exonagat-exon-70859Ectocarpus subulatus male Bft15bexonScaffold_576 257873..257955 +
EsuBft1005_3a-0001-exonagat-exon-70858Ectocarpus subulatus male Bft15bexonScaffold_576 258646..259458 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_3a-0001-exonagat-five_prime_utr-21Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_576 256765..256816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_3a-0001-cdsEsuBft1005_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 256817..257021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_3a-0001EsuBft1005_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 256817..259458 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1005_3a-0001 ID=EsuBft1005_3a-0001|Name=EsuBft1005_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1153bp|location=Sequence derived from alignment at Scaffold_576:256765..259458+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGCGACAGCAGTATTCAATTTGTGCTCGCTCTCCCACGACACACTCGA
CGATGTTCCGCTCCTTGTTCGGGACGACCGTTGCCGGCGAGTACGGAGAC
ACTGGCACCACTGGGGGTAGACGGGGGAACCCATCGGGGCAGGAGCAAGC
GGCCCGAAAGGGAACACCGAACAAGACCGCACCTGGCGGTGGTTCTTCCT
CCGCACATCAGGATGGAGGCGGCTTCTTCCAGCTCGAGCCCACCCATGCC
TCTGCTGAGGAGTCGCTTTTCGACGACTTGGAAGTTAAACCGCCAGCAGT
GGAGCCCAAGCCTTCTCCCATGAAGCCCCCCGCAGACTCGGAGTCTGCCG
CGGGCGTCTTCTCCGCCTTTCAGTTCATGGCAGAGCCCGCCGCGGCTAGC
GACAAGGCAACACCAGTAGGAGGCAGCCCACCCTCAGCAGGAGGGGGAGG
CCAGGGGATGTCGGCGTTTTCGTTCCTGACCGAAGAGTCCCCCGCCGCCG
GGGAAAGTGGTGAAGGCCAGGACGAAACCGTCAGCATCCCTGGGGATGCT
GCCGGGAAGACCACGCCGTCTTCGTTTTCGTTCTTGTCGGAGGGAGGCGG
AGGGGGCCCTGCGACTGAGAGTAGAGTTGCCGCCGAGGCTGCGCCGTCCC
TGGTGTCATCGTCCTCTCCGCTGGCAGCGACCGGCAATGTGGTGTTGCCG
GCACCCTCCGACGGCAAGGAATCGGCAGAAGTCGGGGGTATTGCCGGACA
GACGCCGGGAGACGTCGATCAGCAGCCCGCTGTCTCGTCCGGCCTTGCGA
GCGACGTCTCTTCTCCTTCCGCTTCATCGTCTACGACGGCGCAGGCGGGT
GGCCTTGCCGCCACCGCCACCGCTGCCCAGGAAGGAGCGGACAAGCAGCC
TGCTGCTGACGATGTGCCCTCTTGGAAACCCTCGGCCGGCGTTGTTCGGA
AGAAGAGGGCGGTGAGGAGGGTGGGCTATGCTCGGGAGGAGACGCTGGCG
TCGTCGTTGATGGCTCCGCCGGTACCGCGGTCACCCACGGCGGGCCGACA
ACCCGGCAGCGGCAATGCTTCGACGGAGGCAGCAGGAGACCAGGCCAGCG
GTAGCACGCCGTCTGGGACAGCTGGGGGAGGGATTTCTCGCGGGGGGGGG
NNN
back to top

protein sequence of EsuBft1005_3a-0001

>EsuBft1005_3 ID=EsuBft1005_3|Name=EsuBft1005_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=367bp
MFRSLFGTTVAGEYGDTGTTGGRRGNPSGQEQAARKGTPNKTAPGGGSSS
AHQDGGGFFQLEPTHASAEESLFDDLEVKPPAVEPKPSPMKPPADSESAA
GVFSAFQFMAEPAAASDKATPVGGSPPSAGGGGQGMSAFSFLTEESPAAG
ESGEGQDETVSIPGDAAGKTTPSSFSFLSEGGGGGPATESRVAAEAAPSL
VSSSSPLAATGNVVLPAPSDGKESAEVGGIAGQTPGDVDQQPAVSSGLAS
DVSSPSASSSTTAQAGGLAATATAAQEGADKQPAADDVPSWKPSAGVVRK
KRAVRRVGYAREETLASSLMAPPVPRSPTAGRQPGSGNASTEAAGDQASG
STPSGTAGGGISRGGGX
back to top

mRNA from alignment at Scaffold_576:256765..259458+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1005_3a-0001 ID=EsuBft1005_3a-0001|Name=EsuBft1005_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2694bp|location=Sequence derived from alignment at Scaffold_576:256765..259458+ (Ectocarpus subulatus male Bft15b)
TTTGCGACAGCAGTATTCAATTTGTGCTCGCTCTCCCACGACACACTCGA
CGATGTTCCGCTCCTTGTTCGGGACGACCGTTGCCGGCGAGTACGGAGAC
ACTGGCACCACTGGGGGTAGACGGGGGAACCCATCGGGGCAGGAGCAAGC
GGCCCGAAAGGGAACACCGAACAAGACCGCACCTGGCGGTGGTTCTTCCT
CCGCACATCAGGATGGAGGCGGCTTCTTCCAGCTCGAGCCCACCCATGCC
TCTGCTGGTGAGAGGCTTAAAGAGAGGGAACGGGATGTGTTAGGAGTGCT
TTTAAGCTCTTGTGATGTTGCTTTGCTTTGGGTGTTGTTGACTATGCTTG
CTGAACAGCCAAACCTATCGTTCGTCATGCATGCCGGAGGCTTCTCGATA
GAGAACAGGGGTTGAATCTCTGGTGTGTGGAGCAGTCGAAACAGCAGCCG
CAGCCGCCGCAGCAGCAGCAGCAACAGCAGCTAGAACAGACTACTGTATG
GCGTTACAGCGCGTACGTGTGTTGCGCGAGAGCGTGGGAGGCTTCTATCC
GGTTAAGGAAATATTCCCGGTTGTAAGTGCGTTTGTTAGGACATGGATGT
TCTGTGGTTCAAAACGAGTGTGGGAGAGTGCGAAAGCGTGACCTGCAACC
TTCGGAGGACAGCGTAGACTACCGCGGTAGCCGTTGAAGACTATGCTAGA
GGCATGGGACAGGGAAACGAGACATAGTCTACACACACATGGAATCCTGA
AACATTTTTTTTTCTTTTGAGGAAAAATAACGTTCTCAGACTCTAGAGAG
GGCGCAGCACGGCTGTGCGTACTCTCTTTCCGAACATGAAGCCAACTTTG
GTCCCACCCAACGCATGCAGCGTTTGGCGCGAAACGACGCCATGTTTTCA
TCTCCCACAAGCTGCCGCTGGAGTTGTACGTGACAAAAGAAGGCGTTCGT
TCTCTGAGCTCGAGGCATCGCGTTTCGGAGACAAATGAGTTGTCAACAAG
TCAAGGCATGCCCATGTCCGTTTTCCCCCGCAAACCGAACTCATCTCGGC
TGCTCTCCTTGGTGCGTGTCTCTGTGCTTGTTCGTTTCGTGTGTCGCGTT
GTTGTTAGAGGAGTCGCTTTTCGACGACTTGGAAGTTAAACCGCCAGCAG
TGGAGCCCAAGCCTTCTCCCATGAAGCCCCCCGCAGACTCGGTAGGTGCC
CCTTCGTTGCAAGCGACGCGTGCAGCGCACGTCTCGAGAAAATGTAGCGG
TTATTCCTTAGAGCGCCAGAGGCGACGGGTGCTGCGCATGTCTTGAAACA
AGTAGCAGCAGCGGTTGTGCCCAAGAGCCGGTAGAAGCAACGCGTGCTGC
GCATGTCGTAATACAGGCAGCAGCGGTAGTTCCGAAGAGCCGCTGGCAAA
GTCCGGCTCCGGCGCTGCAGTGTCTTCCGCGTTCGACACCTTTGTTGATT
AAAGTTTTGATATTTGGAGGAATCGTGTTCCAGGTGGGGAGAGGGTATGT
GCGTCTGTGTGTGCCGTCTTCTGCCACCCGGCAATGATGATTGCCTAGGG
TTAAGGTTAGTGTCTCAAGCGTTTGGCGCTGCTGCCTACGTCCATATTAT
GATGTTTGAGGACTCGTGTTCCGGGTGGTGAGCTGGGCGCAGTATGTGGC
TTTCACGCGTTTGTGCTTGTTTCTGTTTGCGCGGTCATTTGGCAACCGAT
CATGGTTCTTGCCCATCGTGAAAAGTTGCTCACCGACTTCGTCTCCTAGA
TCAGGTCCCGGAGAACCATTTGTCGTATTAGAGAACCAGTTCTCGCATTA
CATGTCATAGCTGCTACCGATCTTGATGGCCTGTCCCTTCCTCGCTCTCT
CCGCACACATTTATCGTATCTGTTCCAGCAGGAGTCTGCCGCGGGCGTCT
TCTCCGCCTTTCAGTTCATGGCAGAGCCCGCCGCGGCTAGCGACAAGGCA
ACACCAGTAGGAGGCAGCCCACCCTCAGCAGGAGGGGGAGGCCAGGGGAT
GTCGGCGTTTTCGTTCCTGACCGAAGAGTCCCCCGCCGCCGGGGAAAGTG
GTGAAGGCCAGGACGAAACCGTCAGCATCCCTGGGGATGCTGCCGGGAAG
ACCACGCCGTCTTCGTTTTCGTTCTTGTCGGAGGGAGGCGGAGGGGGCCC
TGCGACTGAGAGTAGAGTTGCCGCCGAGGCTGCGCCGTCCCTGGTGTCAT
CGTCCTCTCCGCTGGCAGCGACCGGCAATGTGGTGTTGCCGGCACCCTCC
GACGGCAAGGAATCGGCAGAAGTCGGGGGTATTGCCGGACAGACGCCGGG
AGACGTCGATCAGCAGCCCGCTGTCTCGTCCGGCCTTGCGAGCGACGTCT
CTTCTCCTTCCGCTTCATCGTCTACGACGGCGCAGGCGGGTGGCCTTGCC
GCCACCGCCACCGCTGCCCAGGAAGGAGCGGACAAGCAGCCTGCTGCTGA
CGATGTGCCCTCTTGGAAACCCTCGGCCGGCGTTGTTCGGAAGAAGAGGG
CGGTGAGGAGGGTGGGCTATGCTCGGGAGGAGACGCTGGCGTCGTCGTTG
ATGGCTCCGCCGGTACCGCGGTCACCCACGGCGGGCCGACAACCCGGCAG
CGGCAATGCTTCGACGGAGGCAGCAGGAGACCAGGCCAGCGGTAGCACGC
CGTCTGGGACAGCTGGGGGAGGGATTTCTCGCGGGGGGGGGNNN
back to top

Coding sequence (CDS) from alignment at Scaffold_576:256765..259458+

>EsuBft1005_3a-0001 ID=EsuBft1005_3a-0001|Name=EsuBft1005_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1101bp|location=Sequence derived from alignment at Scaffold_576:256765..259458+ (Ectocarpus subulatus male Bft15b)
ATGTTCCGCTCCTTGTTCGGGACGACCGTTGCCGGCGAGTACGGAGACAC
TGGCACCACTGGGGGTAGACGGGGGAACCCATCGGGGCAGGAGCAAGCGG
CCCGAAAGGGAACACCGAACAAGACCGCACCTGGCGGTGGTTCTTCCTCC
GCACATCAGGATGGAGGCGGCTTCTTCCAGCTCGAGCCCACCCATGCCTC
TGCTGAGGAGTCGCTTTTCGACGACTTGGAAGTTAAACCGCCAGCAGTGG
AGCCCAAGCCTTCTCCCATGAAGCCCCCCGCAGACTCGGAGTCTGCCGCG
GGCGTCTTCTCCGCCTTTCAGTTCATGGCAGAGCCCGCCGCGGCTAGCGA
CAAGGCAACACCAGTAGGAGGCAGCCCACCCTCAGCAGGAGGGGGAGGCC
AGGGGATGTCGGCGTTTTCGTTCCTGACCGAAGAGTCCCCCGCCGCCGGG
GAAAGTGGTGAAGGCCAGGACGAAACCGTCAGCATCCCTGGGGATGCTGC
CGGGAAGACCACGCCGTCTTCGTTTTCGTTCTTGTCGGAGGGAGGCGGAG
GGGGCCCTGCGACTGAGAGTAGAGTTGCCGCCGAGGCTGCGCCGTCCCTG
GTGTCATCGTCCTCTCCGCTGGCAGCGACCGGCAATGTGGTGTTGCCGGC
ACCCTCCGACGGCAAGGAATCGGCAGAAGTCGGGGGTATTGCCGGACAGA
CGCCGGGAGACGTCGATCAGCAGCCCGCTGTCTCGTCCGGCCTTGCGAGC
GACGTCTCTTCTCCTTCCGCTTCATCGTCTACGACGGCGCAGGCGGGTGG
CCTTGCCGCCACCGCCACCGCTGCCCAGGAAGGAGCGGACAAGCAGCCTG
CTGCTGACGATGTGCCCTCTTGGAAACCCTCGGCCGGCGTTGTTCGGAAG
AAGAGGGCGGTGAGGAGGGTGGGCTATGCTCGGGAGGAGACGCTGGCGTC
GTCGTTGATGGCTCCGCCGGTACCGCGGTCACCCACGGCGGGCCGACAAC
CCGGCAGCGGCAATGCTTCGACGGAGGCAGCAGGAGACCAGGCCAGCGGT
AGCACGCCGTCTGGGACAGCTGGGGGAGGGATTTCTCGCGGGGGGGGGNN
N
back to top