EsuBft1005_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1005_12a-0001
Unique Name	EsuBft1005_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_576	contig	Scaffold_576:165615..167916 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1005_12
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	194
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-28_002480.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1005_12a	EsuBft1005_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_576 165615..167916 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1005_12a-0001-exon	agat-exon-70918	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 165615..166908 +
EsuBft1005_12a-0001-exon	EsuBft1005_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 167269..167916 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1005_12a-0001-cds	EsuBft1005_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_576 165615..166370 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1005_12a-0001-exon	agat-three_prime_utr-34	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_576 166371..166908 +
EsuBft1005_12a-0001-exon	agat-three_prime_utr-35	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_576 167269..167916 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1005_12a-0001	EsuBft1005_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_576 165615..166370 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_576:165615..167916+
coding sequence from alignment at Scaffold_576:165615..167916+

spliced messenger RNA

>EsuBft1005_12a-0001 ID=EsuBft1005_12a-0001|Name=EsuBft1005_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1942bp|location=Sequence derived from alignment at Scaffold_576:165615..167916+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGCCGCCGGCGCCCCCGCCGCCGCCATCCAGGGACGTGGGCCA
TGTCGAGAACATCAGCTCCGAGTCGTTCAACTCGCTGTTTGACCACGAGG
ATTCGATCTTCCGCTCGTGGCCGACGCCGCCCTCCGCAGGGTCCTCGCCA
CCACGCCCGCTACCGTCGTCACCATGCCCGCCGTACTCGCCGGTGTTCTC
GCCGTCGCCGCCGTCGCCACCCCCCTGGCCGCTACCGCGTCCAGCGTCTT
CGTTGGCAAGACCCCCGTGGCGGTCGGAGCAGCAGCAGCAGCGGCCGGGG
CACGGCCCCGCCGCACTGTCAGCCTTCTCTCCCGAGCAGCAGGTCAACCT
CGCGGATTCCGCAGCGTGGCTGTTCGTCGTCGGCCCCTTGCTGGGCGAGG
GGGCGGAGGTAGTAGGTGGTGGTGCTGTTGCTGCGGCAGTCTTGGAAGCG
CCTGCCGCGGTCCCCGCTTCCGTCGACAACACGGCCGGGGCCCGTGCCGG
CGGCGGCGGCGGCGGCGGCGCTGACGATGCCCCGGCTTTGAGGACGACGA
ACGGCTTCATGGCGTGGTTCCGGTCTCCCCGTTCGCCGAGCCCAGCAACA
GGGCGGATGTGCCGGGCGATGAGGGCGGTGTTGGCGACCTTGTCGTCGTT
GGTGTGTCCGTGCTTCGAGAGGATGTATGACGACGACGACGACGACGACG
ACGACGACGACGACGACGACGACGACGATGGCCAGAGCGATAGAGAGAGG
GAGTAGGGCCGCGGCAAAGATGGAATATGAAGTGATCCCCTCTCGGATTG
GATTGTTTCCGCTTTAAACCGTGAAGCTTGTAGCTCAGGCTTTGCGCGAT
AGCAGCAGGTGGCGCGTTGAAAGGTGGTCGTTAAACAGCGGTCGCCTCTT
GGTCCGAGGAACGAAAGTGATTTTTTCAATGAACTTGCCAACCTCTAGTG
CGTTTGCTGTATTCCACTGATTTATTTACCCAAGCATACGAGGATGTAGG
ATTGTTGCTGATTGCTTGTTTTGCTTCGAAGTGCTTTATTATTTACAAGT
ATTTTACCTTTCTTGTTACCTCAATCTTACCAGTAGCATTAAGGTTTGGA
AGGCAGGGTATGGAGTTTTCCTTTCCAACCTTGTCTTCGTGTTTTTCACT
TAACTTGTAATTTGTCCAGTTGAGCTGATGTTCGGGGGACCCTGTAGCGG
GGGTTCCTCGTGACTGCACCACTACCGCTCGCTGTTGGTGCGGATCGCTC
ATCGGTGCAAATCAATTTTGGGTGTGACTGACTTGCGGAGGGAGGTGGTA
ACGGTTGTAGGGGTGGGCGTAGGGGAGTAGCTCGAGATGGGGAGGCGGGA
CGGGGGCGCTCTGTGTGTGTGTGGCCTCCACCATCCATGAGAAAACGTAG
TGTTTTCCGATCGGCTCTATACACTTTTGAGTGCGTCATGCGCGGGCTGA
TTGCGTGGAGGTGCTCCGGATGTGCTCCGGATGGCGCAGCGATGAGAGTC
GAACCTTATGCACCCAGAGCGGTGGGAAACGCCGGACACTTGGCTCTCGG
TACGCTTCGATGCCAACGATTCAACCAGCCCATTGCCGCACGCAGTCGCG
CGGGCTGCTTCCCTGCAACTGCTATATGTCAGGCAGCAGTCAAGAGACAG
CATAGCCGTTCTCTCTGAGTAATAGTACTAGGACAGCCGGCTCCCGTAGA
CGAGATAATATTATCTATCACAGTTTTTTTTTTATACCACCGCGAGTTTT
TGCGGCCCATTGTCCGACCACACCTCCCAGCAGCAAACCGTGAAACCAAT
ACAAGCACAACCGGAACACCACCACTGCTGCCCTTGTTTGGTTCACATGC
ATGCGGTGTTGGTGGGTTATCAGCTCCGCCATTGGATGAGCGGCGAAAAC
CACGAGCGAAAAACGCCCCGCCAAGTCAACCCTCCCCCCACT

protein sequence of EsuBft1005_12a-0001

>EsuBft1005_12 ID=EsuBft1005_12|Name=EsuBft1005_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=251bp
MQPPPAPPPPPSRDVGHVENISSESFNSLFDHEDSIFRSWPTPPSAGSSP
PRPLPSSPCPPYSPVFSPSPPSPPPWPLPRPASSLARPPWRSEQQQQRPG
HGPAALSAFSPEQQVNLADSAAWLFVVGPLLGEGAEVVGGGAVAAAVLEA
PAAVPASVDNTAGARAGGGGGGGADDAPALRTTNGFMAWFRSPRSPSPAT
GRMCRAMRAVLATLSSLVCPCFERMYDDDDDDDDDDDDDDDDDGQSDRER
E

mRNA from alignment at Scaffold_576:165615..167916+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1005_12a-0001 ID=EsuBft1005_12a-0001|Name=EsuBft1005_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2302bp|location=Sequence derived from alignment at Scaffold_576:165615..167916+ (Ectocarpus subulatus male Bft15b)
ATGCAGCCGCCGCCGGCGCCCCCGCCGCCGCCATCCAGGGACGTGGGCCA
TGTCGAGAACATCAGCTCCGAGTCGTTCAACTCGCTGTTTGACCACGAGG
ATTCGATCTTCCGCTCGTGGCCGACGCCGCCCTCCGCAGGGTCCTCGCCA
CCACGCCCGCTACCGTCGTCACCATGCCCGCCGTACTCGCCGGTGTTCTC
GCCGTCGCCGCCGTCGCCACCCCCCTGGCCGCTACCGCGTCCAGCGTCTT
CGTTGGCAAGACCCCCGTGGCGGTCGGAGCAGCAGCAGCAGCGGCCGGGG
CACGGCCCCGCCGCACTGTCAGCCTTCTCTCCCGAGCAGCAGGTCAACCT
CGCGGATTCCGCAGCGTGGCTGTTCGTCGTCGGCCCCTTGCTGGGCGAGG
GGGCGGAGGTAGTAGGTGGTGGTGCTGTTGCTGCGGCAGTCTTGGAAGCG
CCTGCCGCGGTCCCCGCTTCCGTCGACAACACGGCCGGGGCCCGTGCCGG
CGGCGGCGGCGGCGGCGGCGCTGACGATGCCCCGGCTTTGAGGACGACGA
ACGGCTTCATGGCGTGGTTCCGGTCTCCCCGTTCGCCGAGCCCAGCAACA
GGGCGGATGTGCCGGGCGATGAGGGCGGTGTTGGCGACCTTGTCGTCGTT
GGTGTGTCCGTGCTTCGAGAGGATGTATGACGACGACGACGACGACGACG
ACGACGACGACGACGACGACGACGACGATGGCCAGAGCGATAGAGAGAGG
GAGTAGGGCCGCGGCAAAGATGGAATATGAAGTGATCCCCTCTCGGATTG
GATTGTTTCCGCTTTAAACCGTGAAGCTTGTAGCTCAGGCTTTGCGCGAT
AGCAGCAGGTGGCGCGTTGAAAGGTGGTCGTTAAACAGCGGTCGCCTCTT
GGTCCGAGGAACGAAAGTGATTTTTTCAATGAACTTGCCAACCTCTAGTG
CGTTTGCTGTATTCCACTGATTTATTTACCCAAGCATACGAGGATGTAGG
ATTGTTGCTGATTGCTTGTTTTGCTTCGAAGTGCTTTATTATTTACAAGT
ATTTTACCTTTCTTGTTACCTCAATCTTACCAGTAGCATTAAGGTTTGGA
AGGCAGGGTATGGAGTTTTCCTTTCCAACCTTGTCTTCGTGTTTTTCACT
TAACTTGTAATTTGTCCAGTTGAGCTGATGTTCGGGGGACCCTGTAGCGG
GGGTTCCTCGTGACTGCACCACTACCGCTCGCTGTTGGTGCGGATCGCTC
ATCGGTGCAAATCAATTTTGGGTGTGACTGACTTGCGGAGGGAGGTACTC
AACAAGTAGTACATTTTTTTCCCCGAGACGGGATGAAATTCATTAGACTA
GACATTTGGAACGAAGAGCCCTGTAGCGGGGGCTCTTCGAGACGGAGTCG
ATCTGGGTACTTTGACGCATTTATTTTCTGGGACGGGTACGGGTACGGGA
AACGGGAAGAACACGGGCACGGGTATAACCGTACGGGAACTACCAATGTG
GGTGTAGGGTGTACGTAGTACCTCAATGGAGAGGCAGGACGACGGCGCTA
TGTGCGTGTGTGTGGCCTATTACCAAACAACAAAATAAAGTTTCCCATTG
GCAGCCATTGCGGTTGCGATCGGGTACTGGGGCGGGAATGGGTTAACGGT
ACAGGTGGTAACGGTTGTAGGGGTGGGCGTAGGGGAGTAGCTCGAGATGG
GGAGGCGGGACGGGGGCGCTCTGTGTGTGTGTGGCCTCCACCATCCATGA
GAAAACGTAGTGTTTTCCGATCGGCTCTATACACTTTTGAGTGCGTCATG
CGCGGGCTGATTGCGTGGAGGTGCTCCGGATGTGCTCCGGATGGCGCAGC
GATGAGAGTCGAACCTTATGCACCCAGAGCGGTGGGAAACGCCGGACACT
TGGCTCTCGGTACGCTTCGATGCCAACGATTCAACCAGCCCATTGCCGCA
CGCAGTCGCGCGGGCTGCTTCCCTGCAACTGCTATATGTCAGGCAGCAGT
CAAGAGACAGCATAGCCGTTCTCTCTGAGTAATAGTACTAGGACAGCCGG
CTCCCGTAGACGAGATAATATTATCTATCACAGTTTTTTTTTTATACCAC
CGCGAGTTTTTGCGGCCCATTGTCCGACCACACCTCCCAGCAGCAAACCG
TGAAACCAATACAAGCACAACCGGAACACCACCACTGCTGCCCTTGTTTG
GTTCACATGCATGCGGTGTTGGTGGGTTATCAGCTCCGCCATTGGATGAG
CGGCGAAAACCACGAGCGAAAAACGCCCCGCCAAGTCAACCCTCCCCCCA
CT

Coding sequence (CDS) from alignment at Scaffold_576:165615..167916+

>EsuBft1005_12a-0001 ID=EsuBft1005_12a-0001|Name=EsuBft1005_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=756bp|location=Sequence derived from alignment at Scaffold_576:165615..167916+ (Ectocarpus subulatus male Bft15b)
ATGCAGCCGCCGCCGGCGCCCCCGCCGCCGCCATCCAGGGACGTGGGCCA
TGTCGAGAACATCAGCTCCGAGTCGTTCAACTCGCTGTTTGACCACGAGG
ATTCGATCTTCCGCTCGTGGCCGACGCCGCCCTCCGCAGGGTCCTCGCCA
CCACGCCCGCTACCGTCGTCACCATGCCCGCCGTACTCGCCGGTGTTCTC
GCCGTCGCCGCCGTCGCCACCCCCCTGGCCGCTACCGCGTCCAGCGTCTT
CGTTGGCAAGACCCCCGTGGCGGTCGGAGCAGCAGCAGCAGCGGCCGGGG
CACGGCCCCGCCGCACTGTCAGCCTTCTCTCCCGAGCAGCAGGTCAACCT
CGCGGATTCCGCAGCGTGGCTGTTCGTCGTCGGCCCCTTGCTGGGCGAGG
GGGCGGAGGTAGTAGGTGGTGGTGCTGTTGCTGCGGCAGTCTTGGAAGCG
CCTGCCGCGGTCCCCGCTTCCGTCGACAACACGGCCGGGGCCCGTGCCGG
CGGCGGCGGCGGCGGCGGCGCTGACGATGCCCCGGCTTTGAGGACGACGA
ACGGCTTCATGGCGTGGTTCCGGTCTCCCCGTTCGCCGAGCCCAGCAACA
GGGCGGATGTGCCGGGCGATGAGGGCGGTGTTGGCGACCTTGTCGTCGTT
GGTGTGTCCGTGCTTCGAGAGGATGTATGACGACGACGACGACGACGACG
ACGACGACGACGACGACGACGACGACGATGGCCAGAGCGATAGAGAGAGG
GAGTAG