EsuBft1004_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1004_5a-0001
Unique Name	EsuBft1004_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_442	contig	Scaffold_442:22316..25124 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1004_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	280
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1004_5a	EsuBft1004_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_442 22316..25124 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1004_5a-0001-exon	EsuBft1004_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_442 22316..25124 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1004_5a-0001-exon	agat-three_prime_utr-30	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_442 22316..24974 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1004_5a-0001-cds	EsuBft1004_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_442 24975..25124 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1004_5a-0001	EsuBft1004_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_442 24975..25124 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_442:22316..25124-
coding sequence from alignment at Scaffold_442:22316..25124-

spliced messenger RNA

>EsuBft1004_5a-0001 ID=EsuBft1004_5a-0001|Name=EsuBft1004_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2809bp|location=Sequence derived from alignment at Scaffold_442:22316..25124- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
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AGATTGGGAGCCCGTGGTCTCAAAACCCGGCATACACGACCCCACGAAGA
AACAGAAAAAAATAGGGTACAAAAACCACTCGGAAGAGAAACAAAAAGAA
AGAAAGACCAGCTACCGCACCAAACGAGAAAGAGCGTCGAGGAGACCGAT
CAAAATAAAATAAAAGGAGAACGGGGAACGCTTCCCACACCCGCCTACAA
TATATATGTATGTCGCTTCTTTGTGACCTGGGCTGCGGGAGGTGCGTCCC
CGGAAACCAAAACGCCTTTACAACACTTGAGCAGCAGCAAGCAGCAAGCA
GCAGCAGCAAGCAACACAGCAGCAGCACGAACACACAAACAGCCAATAGG
CACCAGCCTGCTCACCTGCATGGCTATTACTACTTGGTGTCATCCACCAC
AGACGCTTCCTACGTCACCTCTAGCATGGAACTTGAAGGACCCACGCACT
GCCAGCAGCAAACATGGTATCATAGCGTAGCAGCTACATATATTTGTATT
ACCGCAGCA

protein sequence of EsuBft1004_5a-0001

>EsuBft1004_5 ID=EsuBft1004_5|Name=EsuBft1004_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MNSSKRFLFFSCTETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_442:22316..25124-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1004_5a-0001 ID=EsuBft1004_5a-0001|Name=EsuBft1004_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2809bp|location=Sequence derived from alignment at Scaffold_442:22316..25124- (Ectocarpus subulatus male Bft15b)
ATGAACTCTTCGAAGCGGTTTCTGTTTTTCAGCTGTACTGAGACNNNNNN
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AGATTGGGAGCCCGTGGTCTCAAAACCCGGCATACACGACCCCACGAAGA
AACAGAAAAAAATAGGGTACAAAAACCACTCGGAAGAGAAACAAAAAGAA
AGAAAGACCAGCTACCGCACCAAACGAGAAAGAGCGTCGAGGAGACCGAT
CAAAATAAAATAAAAGGAGAACGGGGAACGCTTCCCACACCCGCCTACAA
TATATATGTATGTCGCTTCTTTGTGACCTGGGCTGCGGGAGGTGCGTCCC
CGGAAACCAAAACGCCTTTACAACACTTGAGCAGCAGCAAGCAGCAAGCA
GCAGCAGCAAGCAACACAGCAGCAGCACGAACACACAAACAGCCAATAGG
CACCAGCCTGCTCACCTGCATGGCTATTACTACTTGGTGTCATCCACCAC
AGACGCTTCCTACGTCACCTCTAGCATGGAACTTGAAGGACCCACGCACT
GCCAGCAGCAAACATGGTATCATAGCGTAGCAGCTACATATATTTGTATT
ACCGCAGCA

Coding sequence (CDS) from alignment at Scaffold_442:22316..25124-

>EsuBft1004_5a-0001 ID=EsuBft1004_5a-0001|Name=EsuBft1004_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_442:22316..25124- (Ectocarpus subulatus male Bft15b)
ATGAACTCTTCGAAGCGGTTTCTGTTTTTCAGCTGTACTGAGACNNNNNN
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