EsuBft1004_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1004_4a-0001
Unique Name	EsuBft1004_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_442	contig	Scaffold_442:30952..32407 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6669.EFX68856
ProteomeId	EsuBft1004_4
Protein domains	Coil
Protein domains	PTHR19303
Protein domains	IPR004875
Owner	apollo_admin@sb-roscoff.fr
Note	jerky protein homolog-like os:homo sapiens gn:jrkl pe:2 sv:2 [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	1188
Evalue	2.5e-57
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota,38HJW@33154\|Opisthokonta,3BCG5@33208\|Metazoa,3CXR0@33213\|Bilateria,420II@6656\|Arthropoda
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Jerky protein homolog-like
COG category	BD

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1004_4a	EsuBft1004_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_442 30952..32407 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1004_4a-0001-exon	agat-exon-32111	Ectocarpus subulatus male Bft15b	exon	Scaffold_442 30952..31387 -
EsuBft1004_4a-0001-exon	EsuBft1004_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_442 31656..32407 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1004_4a-0001-exon	agat-three_prime_utr-29	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_442 30952..30996 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1004_4a-0001-cds	EsuBft1004_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_442 30997..31387 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1004_4a-0001	EsuBft1004_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_442 30997..32407 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_442:30952..32407-
coding sequence from alignment at Scaffold_442:30952..32407-

spliced messenger RNA

>EsuBft1004_4a-0001 ID=EsuBft1004_4a-0001|Name=EsuBft1004_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1188bp|location=Sequence derived from alignment at Scaffold_442:30952..32407- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGGNGCTGGCGGCAGGTGGATGAGATAGCTCTTGATCTACTCGA
CAAAGCCCGGAANGCCGAGAAGTACCCGGCTAGGTTCATCTTCAACGTCG
ACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTTTCC
ACCTCGGAGGATCGGAAGACGGCGCGGGGCTCAAAGAGCACGCACTTCAA
GGACCGACTGTCTGCCATCATGTGCTGCAATGCCGATGGCACTGCGAAGG
TGGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCTTCAAGAAC
GGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGGTCCGACTC
CGCGACGTTCCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTTCGTTCGGC
GCTTCACTCACGAACCTGTGCTGCTGCTGATGGACGGCTGTTCGTCTCAC
AGTGATCTAGTGGATGATCGCGGGCAAGTTACCGTCATGACCTACCCTCC
GCTGTGCACCGCCGTACACCAACCCATGGACCAGGGGGTCATCGCCAAGA
CGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCAACCATG
TTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAGATGAAGGC
CGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCGGGACGCCG
CTGAACGTCTCCAGAAAGCATGGGCCAGCGTCACCGCTCAAGACATCGCC
AGGTGCTTTGTCAAAGCCGAGACGCTTCCGGAGGAGATGGCGGCTGAGCT
CACCAAGCAACACGGAAAGACCCGGTTCAACGTCGCCGAGCCTGACCTGA
AGGCTCTCGCAGAGACTGTCAACACGTTGAGCACGAGCGTGCAGGACGCC
CAGAAGCAGGGATCCTGCGTCGTGGACGAGGAGATCAGCGAACTGTTGGC
AGAACTCAACATCGAACCCGGAAAGCCGGTCGCGGGGGAAGCGGTGGCCG
CGATTCAGGGGTGGGCTACCATCGAGGACGACGAGGAGGTGGTAGAGGCT
CTTCGATTGGACGCGGTGGAAGACATGACAGCACTGCTGGCTGGAACGAA
CTTGTCTACCGGCGGCGACGACGAGGAGGACGAACAGGACTAGGGCGGCG
GCGGTGAGAACACGGAGCGCGAGCGCCGTGCCTCACGT

protein sequence of EsuBft1004_4a-0001

>EsuBft1004_4 ID=EsuBft1004_4|Name=EsuBft1004_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=380bp
MARXWRQVDEIALDLLDKARXAEKYPARFIFNVDETGLQWKLMPRRTYLS
TSEDRKTARGSKSTHFKDRLSAIMCCNADGTAKVDMAIIGRAKEPRCFKN
GGSPLKYFSQTNAWSDSATFLKWWLEVFLPFVRRFTHEPVLLLMDGCSSH
SDLVDDRGQVTVMTYPPLCTAVHQPMDQGVIAKTKVNYRKELLDVKTSTM
LVADTLRAQAKARKMKAGTMGLAQGHQPHVRDAAERLQKAWASVTAQDIA
RCFVKAETLPEEMAAELTKQHGKTRFNVAEPDLKALAETVNTLSTSVQDA
QKQGSCVVDEEISELLAELNIEPGKPVAGEAVAAIQGWATIEDDEEVVEA
LRLDAVEDMTALLAGTNLSTGGDDEEDEQD

mRNA from alignment at Scaffold_442:30952..32407-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1004_4a-0001 ID=EsuBft1004_4a-0001|Name=EsuBft1004_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1456bp|location=Sequence derived from alignment at Scaffold_442:30952..32407- (Ectocarpus subulatus male Bft15b)
ATGGCGAGGNGCTGGCGGCAGGTGGATGAGATAGCTCTTGATCTACTCGA
CAAAGCCCGGAANGCCGAGAAGTACCCGGCTAGGTTCATCTTCAACGTCG
ACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTTTCC
ACCTCGGAGGATCGGAAGACGGCGCGGGGCTCAAAGAGCACGCACTTCAA
GGACCGACTGTCTGCCATCATGTGCTGCAATGCCGATGGCACTGCGAAGG
TGGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCTTCAAGAAC
GGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGGTCCGACTC
CGCGACGTTCCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTTCGTTCGGC
GCTTCACTCACGAACCTGTGCTGCTGCTGATGGACGGCTGTTCGTCTCAC
AGTGATCTAGTGGATGATCGCGGGCAAGTTACCGTCATGACCTACCCTCC
GCTGTGCACCGCCGTACACCAACCCATGGACCAGGGGGTCATCGCCAAGA
CGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCAACCATG
TTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAGATGAAGGC
CGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCGGGACGCCG
CTGAACGTCTCCAGAAAGCATGGGCCAGCGTCACCGCTCAAGACATCGCC
AGGTGAGGTTTGAACATGTGATATCGCTGTTTTAAATGTGTAGCTCGCGC
AAGTGCGCATGGCTTTGGTGGTACGTTACGTGGGTAAGGTTGTACGGATA
GGTTTTATTTTTCGACTGAATATTCCCGCAACCGCAAATCTCCTTGTTTC
TTCGCTAAAAAAAGGGCCCTCTCTCGCATCCCTATGAGTCATTGTTTGTC
ACTGGGTTCGTCTAACATCGCTTCTCCACCCAAACACGGATGCATCACAA
TTTCTGCGCTACCTGGCCAGGTGCTTTGTCAAAGCCGAGACGCTTCCGGA
GGAGATGGCGGCTGAGCTCACCAAGCAACACGGAAAGACCCGGTTCAACG
TCGCCGAGCCTGACCTGAAGGCTCTCGCAGAGACTGTCAACACGTTGAGC
ACGAGCGTGCAGGACGCCCAGAAGCAGGGATCCTGCGTCGTGGACGAGGA
GATCAGCGAACTGTTGGCAGAACTCAACATCGAACCCGGAAAGCCGGTCG
CGGGGGAAGCGGTGGCCGCGATTCAGGGGTGGGCTACCATCGAGGACGAC
GAGGAGGTGGTAGAGGCTCTTCGATTGGACGCGGTGGAAGACATGACAGC
ACTGCTGGCTGGAACGAACTTGTCTACCGGCGGCGACGACGAGGAGGACG
AACAGGACTAGGGCGGCGGCGGTGAGAACACGGAGCGCGAGCGCCGTGCC
TCACGT

Coding sequence (CDS) from alignment at Scaffold_442:30952..32407-

>EsuBft1004_4a-0001 ID=EsuBft1004_4a-0001|Name=EsuBft1004_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1143bp|location=Sequence derived from alignment at Scaffold_442:30952..32407- (Ectocarpus subulatus male Bft15b)
ATGGCGAGGNGCTGGCGGCAGGTGGATGAGATAGCTCTTGATCTACTCGA
CAAAGCCCGGAANGCCGAGAAGTACCCGGCTAGGTTCATCTTCAACGTCG
ACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTTTCC
ACCTCGGAGGATCGGAAGACGGCGCGGGGCTCAAAGAGCACGCACTTCAA
GGACCGACTGTCTGCCATCATGTGCTGCAATGCCGATGGCACTGCGAAGG
TGGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCTTCAAGAAC
GGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGGTCCGACTC
CGCGACGTTCCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTTCGTTCGGC
GCTTCACTCACGAACCTGTGCTGCTGCTGATGGACGGCTGTTCGTCTCAC
AGTGATCTAGTGGATGATCGCGGGCAAGTTACCGTCATGACCTACCCTCC
GCTGTGCACCGCCGTACACCAACCCATGGACCAGGGGGTCATCGCCAAGA
CGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCAACCATG
TTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAGATGAAGGC
CGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCGGGACGCCG
CTGAACGTCTCCAGAAAGCATGGGCCAGCGTCACCGCTCAAGACATCGCC
AGGTGCTTTGTCAAAGCCGAGACGCTTCCGGAGGAGATGGCGGCTGAGCT
CACCAAGCAACACGGAAAGACCCGGTTCAACGTCGCCGAGCCTGACCTGA
AGGCTCTCGCAGAGACTGTCAACACGTTGAGCACGAGCGTGCAGGACGCC
CAGAAGCAGGGATCCTGCGTCGTGGACGAGGAGATCAGCGAACTGTTGGC
AGAACTCAACATCGAACCCGGAAAGCCGGTCGCGGGGGAAGCGGTGGCCG
CGATTCAGGGGTGGGCTACCATCGAGGACGACGAGGAGGTGGTAGAGGCT
CTTCGATTGGACGCGGTGGAAGACATGACAGCACTGCTGGCTGGAACGAA
CTTGTCTACCGGCGGCGACGACGAGGAGGACGAACAGGACTAG