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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2880.D8LE32 |
ProteomeId | EsuBft1003_9 |
Protein domains | SSF50993 |
Protein domains | IPR017986 |
Protein domains | IPR015943 |
Protein domains | PTHR13720 |
Protein domains | IPR001680 |
Owner | apollo_admin@sb-roscoff.fr |
Note | echinoderm microtubule-associated 6 os:mus musculus gn:eml6 pe:2 sv:1 [Automatic annotation] |
Nb exon | 11 |
Max annot lvl | 2759|Eukaryota |
Length | 1670 |
Hectar predicted targeting category | other localisation |
Evalue | 0.0 |
EggNOG OGs | COG2319@1|root,KOG2106@2759|Eukaryota |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
KEGG ko | ko:K18595,ko:K18598 |
Description | microtubule binding |
COG category | O |
BRITE | ko00000,ko04812 |
Cross References
External references for this mRNA
Database | Accession |
GO | 0005975 |
GO | 0031227 |
GO | 0044430 |
GO | 0015630 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1003_9a-0001 ID=EsuBft1003_9a-0001|Name=EsuBft1003_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1670bp|location=Sequence derived from alignment at Scaffold_340:895606..901625- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AACGCGCACCAATGGGACAACAACGCGCTTGGCAGGCGACCGGGAAGGGG GGGCGAGGTTTCGGGCACGTGTTTTTCGCGGAGTTTTCTCACTCAGACGA CGACGAGCTCCGCGTCATTACCGGAGGGGTCGGTCACGTCAAATTCTGGG CTCTTAACGGAAGGTTGTTCAACGCCAGAATGGGCCTCTTTGGGAAGGTG GGCAAGCGGCAGACGATGCTGTGCGGGACGGCCATCGCGGCGGCCCGGTT CGTCAGCGGCGGAGTAAGCGGCCACCTGTACGTGTGGAAGGGGAGGTGGC TCGAGAAGACCCTGCGCGCCCACCAACGGTGCGTCAACTCCGTCCATCAC ACCGCAGGGGGCTTAGTCACGGGTGGGAAGGACGGCTTTGTCAAGCTCTG GAGCACGCAACTGGCGCACCTCAAGACTTTTGACTTGAGCGAGGCTACAG TCCCGCCCCTTCTTCGTGGTGTGCGATCGGTCTGCGCGTCTCTCGACGTT ACCGGGTCGGAGGTGATCAAGATCGCGGCGGTGACGGCTGGCTCTGAGGT TTACGAGATAAGCAGGGAGAGCGGCTCCATGATGTTGCTGCAGGAGGGCC ACTTTAGCGGGCAGCTCTGGGGGCTGGCGGCACACCCTACGGATGGAGAC ATCTTCGCAACGGCTGGGGACGACCACAGCATTCGAGTGTGGAGCGTGTC ACTTGGAGTCATGCTGCGGAAGGCGTACGTGGATGGCACGTGTCGAGCGC TGGGATGGTCACCCGACGGCCGGCTCCTCCTCATTGGGATGGGCGGCAGC ATCGGTTGCGAGCGCACGAGGAAGGATGGGACGTTCTTGATTTTCGACGT GTACAACATGGAGATCCTGTACGAGGGGAGGGACTCCCGCTCTTGGATCC GGGCGTGCTGCTTCAGTCCCGACGGCAAGACCTTCGCGGTGGCGTCGACG GACAACAAGATCTACATCTACGACTCTAAGTCCTATGGGCTCAAGGCTAA GGCCCAGAAACACAACAGCCCCCTCGTGGCCCTGGACTTCAGCGAGGACT CTAACTACGTGCAGTCCGCCTCCGAGGACAACGAACTCCTCTACCATAGC GTTGGCGACGGCCTGCCGTTCACAGTGCAAGCCCAGCTGAAGCACATCAA GTGGTCACAGTACACGTGTCCGTTCGGCTGGCCTGTTCAGGGGGCCTGGC CTCCCGTAGCCGAGGAAAACGCCGCGACGTTAACCTCGCTCCACCGATCG CACGACAGAACCCTTCTGGTGACCGCGGACGATGCTGGCAATGTCAAGCT GTTCAGATACCCCACACTATCGAAGCAGGCGGGTTACAAGCTCGTCTCCG GCCACGTCGGGGGCATTTCGTGTGTCAGGTTTACGGCTGACGACGCGCAC ATCGTGTCCATCGGCAAGGGTGATCGAGCGATCTTCGTCTGGAAGGTCGA TGAGGCAGCGGACGGGCTCCCCCCGTAGGGAGGGGTCGGGAAAAAGGGCG AAAGAGCGCCCGCAGCCAAAGCGACGCTGCGTTTTGGCGGTGTCTGCGAA GAGTAGCCGCAGACAGAAGATTGGATGCGAAGGACAGTGCTGGGATACGG CGTGGGAGGGGCACAGGGTGGTACCAATTCGCCCGGCCCTTCCCCTCCCC GGTAGTACGAAGCTACAGTT back to topprotein sequence of EsuBft1003_9a-0001 >EsuBft1003_9 ID=EsuBft1003_9|Name=EsuBft1003_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=488bp
MGQQRAWQATGKGGRGFGHVFFAEFSHSDDDELRVITGGVGHVKFWALNG RLFNARMGLFGKVGKRQTMLCGTAIAAARFVSGGVSGHLYVWKGRWLEKT LRAHQRCVNSVHHTAGGLVTGGKDGFVKLWSTQLAHLKTFDLSEATVPPL LRGVRSVCASLDVTGSEVIKIAAVTAGSEVYEISRESGSMMLLQEGHFSG QLWGLAAHPTDGDIFATAGDDHSIRVWSVSLGVMLRKAYVDGTCRALGWS PDGRLLLIGMGGSIGCERTRKDGTFLIFDVYNMEILYEGRDSRSWIRACC FSPDGKTFAVASTDNKIYIYDSKSYGLKAKAQKHNSPLVALDFSEDSNYV QSASEDNELLYHSVGDGLPFTVQAQLKHIKWSQYTCPFGWPVQGAWPPVA EENAATLTSLHRSHDRTLLVTADDAGNVKLFRYPTLSKQAGYKLVSGHVG GISCVRFTADDAHIVSIGKGDRAIFVWKVDEAADGLPP back to topmRNA from alignment at Scaffold_340:895606..901625- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1003_9a-0001 ID=EsuBft1003_9a-0001|Name=EsuBft1003_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6020bp|location=Sequence derived from alignment at Scaffold_340:895606..901625- (Ectocarpus subulatus male Bft15b) AACGCGCACCAATGGGACAACAACGCGCTTGGCAGGCGACCGGGAAGGGG
GGGCGAGGTTTCGGGCACGTGTTTTTCGCGGAGTTTTCTCACTCAGACGA
CGACGAGCTCCGCGTCATTACCGGAGGGGTCGGTCACGTCAAATTCTGGG
CTCTTAACGGAAGGTAAACAATTATATGATGACGAAGAAGGAGAGAAAAG
AAGAATGCGCGTATCGTTGAGCCCCGTGGGTATAAGCACTGATGCCGAGC
AACTTTACGTTCAACAGGCAGGGTCCTTGGGTAGGTTTCCCAAAACAAAC
ACACTTTCAATTATCCAAACATCCTATGTTTCGCTCTTCCGGTTCATCAC
TCTTGAACATCAGCCAGGGGAATAAGGTGTTGGCTGCGGTGTGTAAAGGT
GATGCGTAGCTGTAGTTACATCCCTTTTGCTTGCCGTTTATCTATATCGT
CCGCTGCATCCGCACTCTGTGGGTTTAGTCAGGCGGACTAACGTGCAACT
TGGTGGACAAGGTAGGGAGGTGGTGGTTGTTTTTTACTCCGATCGCCTAC
CTGCACCCACGCAGGAATGGTAGATGGCGTATATTATGTCTGGTGAATTC
GAGAAGAGTCAACAATCAATATCCCCGGCAACGCAGAAAGAATCAAATGC
TGGATGAAACCACAACGGAGGAGACGGATCCGACTTGTTTCGACAACTCT
GCGTCGTGTTGCCTTCCCCCTTCTGCAATGCACGCATCGTACGAGTAAGC
TAGGCCACCTGGAAGCTTGCCCCCAGCCAAGAAAAACGTGAGCGGCCTTG
TCCTCCGTTGATGTTCACCGTTATTTGCGCCTGTCGTGATCATCGCCATC
ACGCCGCACCGCGCCTCGCTGCACACGGCCCGACGTTTGCCACCGCAGGT
TGTTCAACGCCAGAATGGGCCTCTTTGGGAAGGTGGGCAAGCGGCAGACG
ATGCTGTGCGGGACGGCCATCGCGGCGGCCCGGTTCGTCAGCGGCGGAGT
AAGCGGCCACCTGTACGTGTGGAAGGGGAGGTGAGAGTCGTTGCAGTCGG
GGCCCCTCTATGGTGCGGGTATGCACGTTGCCAAGCGCTTTCACCCGCGC
CATGGCGGGTACCCGCAACATTCAATGTATTAATCAAACTTGATTGTTCC
CTCTGTGCCAGCCAATTTCACCTGCATGGCATCTACAGGCTGCGGTGTAT
AACCGCTTTCCGTACTTCACAGATGCGATCTTTATTGGTCCGTCATATTC
GTTTCATTAGGTTTGTACACTGCCGTCCGTTTTTCAAGAGCTTGGAGACA
GGCCACTAAACTGTTTCCTCGTCGATAACTGCACAACATACGAAGACTAT
GTAGGTTGTCCACTAGCCCTAAATCGTCCACATTATTGTATGCTGGTGCT
TCAGGTGGCTCGAGAAGACCCTGCGCGCCCACCAACGGTGCGTCAACTCC
GTCCATCACACCGCAGGGGGCTTAGTCACGGGTGGGAAGGACGGCTTTGT
CAAGCTCTGGAGCACGCAACTGGCGCACCTCAAGACTTTTGACTTGAGCG
AGGTGACTACCCAACAAGGATGGTTCTTCCGGCAGGCAGAACTTCTCTTT
TTTTCATACTCATGAAAGTAAAATTAGGACGGGACTTTTTTGTTCGGAGA
CGTTCATTGTGACGTCCTACAACAGGGCAGATGATTCCGCTGGAAAGTGA
GAAGCGCTGGCTGGCAACGTTGGGCTGAAGATGTTGGCTCGTCCGATTCG
TTGGTCCTGATTCAGTACCCTCGTTCCCCTCCTTTCTATTGCCGACATGC
GCATACACAAGGTGATCCGTAAGGTCCGCACCCGCCATCACCCCATCACT
TGACATGCTGAAAAGAACGAAACAACCGAAACTCGGCCCCATCCCAATCG
TTGACATGCTCACATTGACAGCACATGACTGTCGCTGGAAGTGGTGAGAC
CAGAGAATCCCGTTTTCCAAGCTGGCATCCATACCCAATAACGTAGGCGC
AACACTCTCCAACAATCAAACAGCCAAACACTCATAATTCGACACAGCTT
CACTCTTGATGCGCCTCGCCGAATGTCCCACTGCGCTTCGCGTTTGGTGC
AAAGCATCTCAGCCTCGCCCGGTGAGAACCCGGCGTGTTGCGTCCCGGCT
TTCTAGGGGCGCACGGTCTATGGTCTTATGGCTGCGACATGATCATGAAT
ACACCCCCTCCCCCCCATTCCAGTCTCGGTTCTTCACCGAACAACTCTCC
GCCCCCCTCCACCCCCACGCCCACACCCCAAACCCCCTCTAGGCTACAGT
CCCGCCCCTTCTTCGTGGTGTGCGATCGGTCTGCGCGTCTCTCGACGTTA
CCGGGTCGGAGGTGATCAAGATCGCGGCGGTGACGGCTGGCTCTGAGGTT
TACGAGATAAGCAGGGAGAGCGGCTCCATGATGTTGCTGCAGGTGTGTGG
TTGGTGGGTTGGTGTGGTGCATGCTGGCGTTTGGCGCTCGTGAGATCGAC
AGCGCGTGCCTATGATCGGTCTGAGGTGCTGCCCAGGAAGTAATGACGGC
ATACAACACACCGAATTTTGAAAGAAAGATCACAACAAGCACGGCAATAA
CAACAACAATAGCGACGACGACGACGACGACGACGACAACAACAACAACA
ACAACAGCAACAACAACAACAACAACAACAACAACAACAACAGCAACAAC
AACAACAAACCCCGACCACAGCGACCACAACGACCACAACGACCACAACC
ACAACATGACAGGAGGGCCACTTTAGCGGGCAGCTCTGGGGGCTGGCGGC
ACACCCTACGGATGGAGACATCTTCGCAACGGCTGGGGACGACCACAGCA
TTCGAGTGTGGAGCGTGTCACTTGGAGTCATGCTGCGGAAGGCGTACGTG
GATGGCACGTGTCGAGCGCTGGGATGGTCACCCGACGGCCGGTACGCTAC
AGCAGCAGGTTGTTATTTTCTCGTACTCATCCCCCCACCCATACGGCAAC
CTAACGTTTCTATCCAACTAATCAGTCCGCCGGGCCTTTTTGCTGAGCTT
CCGCGTTTCTCTCATGAAGGCTTATACTATTTCCCCCTGCCCGCGTCATC
GTGCGTACATTGATTTCAATTATTGGCCCAACACTCGAAAAAGGCTCCTC
CTCATTGGGATGGGCGGCAGCATCGGTTGCGAGCGCACGAGGAAGGATGG
GACGGTAAGCACCACACCCGATCGTTTCTTCGTTTGTATTTTTTTCTCGC
TTTAGAAGTTGCTCACGAGTGCACCCACTTACGACGGGCGAAACGCAAGA
CGTACGGCCACTGCTGATGAAACAGTCCGACAATTGAAGAAGGGAGCTGA
AGAGAAAAAACACACGCCGAAACTCATGATGAAAACAGGGGGGCGTAGAC
GTTACAGTGCAAGCTTCCAAGAGATCAACTCCTTTCGAAGCGCCTCTGCC
CGGTGTGTTTGCTTTCATGTTTTTTCCCCACCGCTATCCTCCACGAGGTC
ATGCCACGGGTGGGTGTGCTGTCCCAGTCATTACTCGCCGTCACGCAGAA
ACGCAGCTGAGCATTGACTAAAGGCATCACGAGACTTAGCGGGAAGTACC
TCCCCGGTCATGTCCGCGGTCCGAACTCGTTTTGCGAATATGCGCGTGAC
GCTTCCATGGCCATCAGTTCTTGATTTTCGACGTGTACAACATGGAGATC
CTGTACGAGGGGAGGGACTCCCGCTCTTGGATCCGGGCGTGCTGCTTCAG
TCCCGACGGCAAGACCTTCGCGGTGGCGTCGACGGACAACAAGATCTACA
TCTACGACTCTAAGTCCTATGGGCTCAAGGCTAAGGTTAGTGGAGGTGGA
GCGAGGTAGAACGAACGCGATAATCTTTTTATCTGCTTTGCAAGGAAGGA
TGGTTGGTAGAAAGACCATTTGAAAACAGTCAGCGTCAACTCCCACCTAT
CATTGTCATCTTATTTTCCAGATCCCAACAATAGTTCACACAGCACTTTA
CGTATCGATGGATTTGGGATTCGCAGTATGATTCCCCACCACTCAACCCG
CTGACCCTTTTCTCGATAAATTATTGTTCGTCCATTCGTACCTGCGTCAA
CTACTCTGATAATGGTGTGTGGTGGACCTGACGTTTTCGATCAACGTATT
GAAATGAAATTGTGAGAATGAACCGCGTACGGTCCGCAGAGCAACCTCCT
ACGGAGCCCTGGGAGCACTTTGCAGAAACCCCCGACACTAAATTAACACG
CAGGCCCAGAAACACAACAGCCCCCTCGTGGCCCTGGACTTCAGCGAGGA
CTCTAACTACGTGCAGTCCGCCTCCGAGGACAACGAACTCCTCTACCGTG
AGTTGTGACCAGCTTTAAAGTTTCAAGTCTTGTTATATGAAAAGAGATGA
CTCGCTCATCTCGTTTTCTACAACCATGACGTTTTGATTTGCACGTCGGC
AAGTAAATGTCATCAGTAGATATTGTGAAACGGGCTTGTTAATTGTGAGG
TGTAAAACTTTTGTACCGTCAGTCAGGTGACGCACGACACCGCCTTTCGT
CCCTGGGACTCGATCGTACACGCTCGTGACATGTGGACTAGTGCGAGGAA
GGAGAGGGGGAACGTAAAGCTGGAGGATGTCGCACCTAGAGCTATCAGTT
CTCGATGCCATAGGCGACGCAGTGAAAAGTTCTCAGCGAGACGTTAACCA
GTGGCGCTGAGTACGGCGTTTGTGTACTCCGCGCCCTCGTTGTGGTTCGT
CACCCCCCCACGCCCGCTTCTCCTTTCAGATAGCGTTGGCGACGGCCTGC
CGTTCACAGTGCAAGCCCAGCTGAAGCACATCAAGTGGTCACAGTACACG
TGTCCGTTCGGCTGGCCTGTTCAGGGGGCCTGGCCTCCCGTAGCCGAGGA
AAACGCCGCGACGTTAACCTCGCTCCACCGGTAAGTTTGAGGAACCGATG
ATTTCGTCGCGAACATATTAAGTTCGAGGCAAAACCCGCCTACAATGTCA
ATGGATGTATCTACACAGACACCTCTTCATTTTGATTGTGTCACAGTGAA
CACACTCTACCCTTACCTACAATCCGGGTAGCCAACGCGTATGTATTCTC
GTCTATCTTCATTTTTGAGCGGTGGCATCGAGTTTTCTCGCGATTACGGT
GTCTTAGCCAACCCTACTCAAGAGGCCCCACGGCACATCCAAAGTACTCG
ATACTACGAGAACGAAAATGCATGCACCCCTTCTTCGTGCCGCCGGGTGG
CGGTTGTTTTTTGTGTCAACACAGATCGCACGACAGAACCCTTCTGGTGA
CCGCGGACGATGCTGGCAATGTCAAGCTGTTCAGATACCCCACACTATCG
AAGCAGGTGAGACTAGCGAACGTGGATATATTACGTAAGGGCGATGATTG
GTGGGAATGATGTGGTATGTGTTAAAACCAATCATGAAAGGGTGTAGTGG
CGCGTTATTCTCCGGCGAGTTCTGCCGTTTCTCCATACATGAGGGGAAAG
GGCTTGGCAACGCGAAACCCATTTGCGAGTCCTCCTCCTACAGAACGCCA
GCCAACAAATCACCATGTCTGTCTGTTCTTGCGGAGGTCTCCGCGTCAAA
CAGCTTGCTGTGGTGCATCCTTGGCCTGATGATTTTTCGTCACCGCCATT
CGCTCGCCGTCTTTCGTCCTCGGAGTAGGCGGGTTACAAGCTCGTCTCCG
GCCACGTCGGGGGCATTTCGTGTGTCAGGTTTACGGCTGACGACGCGCAC
ATCGTGTCCATCGGCAAGGGTGATCGAGCGATCTTCGTCTGGAAGGTCGA
TGAGGCAGCGGACGGGCTCCCCCCGTAGGGAGGGGTCGGGAAAAAGGGCG
AAAGAGCGCCCGCAGCCAAAGCGACGCTGCGTTTTGGCGGTGTCTGCGAA
GAGTAGCCGCAGACAGAAGATTGGATGCGAAGGACAGTGCTGGGATACGG
CGTGGGAGGGGCACAGGGTGGTACCAATTCGCCCGGCCCTTCCCCTCCCC
GGTAGTACGAAGCTACAGTT back to topCoding sequence (CDS) from alignment at Scaffold_340:895606..901625- >EsuBft1003_9a-0001 ID=EsuBft1003_9a-0001|Name=EsuBft1003_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1467bp|location=Sequence derived from alignment at Scaffold_340:895606..901625- (Ectocarpus subulatus male Bft15b) ATGGGACAACAACGCGCTTGGCAGGCGACCGGGAAGGGGGGGCGAGGTTT CGGGCACGTGTTTTTCGCGGAGTTTTCTCACTCAGACGACGACGAGCTCC GCGTCATTACCGGAGGGGTCGGTCACGTCAAATTCTGGGCTCTTAACGGA AGGTTGTTCAACGCCAGAATGGGCCTCTTTGGGAAGGTGGGCAAGCGGCA GACGATGCTGTGCGGGACGGCCATCGCGGCGGCCCGGTTCGTCAGCGGCG GAGTAAGCGGCCACCTGTACGTGTGGAAGGGGAGGTGGCTCGAGAAGACC CTGCGCGCCCACCAACGGTGCGTCAACTCCGTCCATCACACCGCAGGGGG CTTAGTCACGGGTGGGAAGGACGGCTTTGTCAAGCTCTGGAGCACGCAAC TGGCGCACCTCAAGACTTTTGACTTGAGCGAGGCTACAGTCCCGCCCCTT CTTCGTGGTGTGCGATCGGTCTGCGCGTCTCTCGACGTTACCGGGTCGGA GGTGATCAAGATCGCGGCGGTGACGGCTGGCTCTGAGGTTTACGAGATAA GCAGGGAGAGCGGCTCCATGATGTTGCTGCAGGAGGGCCACTTTAGCGGG CAGCTCTGGGGGCTGGCGGCACACCCTACGGATGGAGACATCTTCGCAAC GGCTGGGGACGACCACAGCATTCGAGTGTGGAGCGTGTCACTTGGAGTCA TGCTGCGGAAGGCGTACGTGGATGGCACGTGTCGAGCGCTGGGATGGTCA CCCGACGGCCGGCTCCTCCTCATTGGGATGGGCGGCAGCATCGGTTGCGA GCGCACGAGGAAGGATGGGACGTTCTTGATTTTCGACGTGTACAACATGG AGATCCTGTACGAGGGGAGGGACTCCCGCTCTTGGATCCGGGCGTGCTGC TTCAGTCCCGACGGCAAGACCTTCGCGGTGGCGTCGACGGACAACAAGAT CTACATCTACGACTCTAAGTCCTATGGGCTCAAGGCTAAGGCCCAGAAAC ACAACAGCCCCCTCGTGGCCCTGGACTTCAGCGAGGACTCTAACTACGTG CAGTCCGCCTCCGAGGACAACGAACTCCTCTACCATAGCGTTGGCGACGG CCTGCCGTTCACAGTGCAAGCCCAGCTGAAGCACATCAAGTGGTCACAGT ACACGTGTCCGTTCGGCTGGCCTGTTCAGGGGGCCTGGCCTCCCGTAGCC GAGGAAAACGCCGCGACGTTAACCTCGCTCCACCGATCGCACGACAGAAC CCTTCTGGTGACCGCGGACGATGCTGGCAATGTCAAGCTGTTCAGATACC CCACACTATCGAAGCAGGCGGGTTACAAGCTCGTCTCCGGCCACGTCGGG GGCATTTCGTGTGTCAGGTTTACGGCTGACGACGCGCACATCGTGTCCAT CGGCAAGGGTGATCGAGCGATCTTCGTCTGGAAGGTCGATGAGGCAGCGG ACGGGCTCCCCCCGTAG back to top
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