EsuBft1002_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1002_9a-0001
Unique NameEsuBft1002_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:4513..6694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1002_9
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTMhelix
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length162
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003360.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_9aEsuBft1002_9aEctocarpus subulatus male Bft15bgeneScaffold_228 4513..6694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_9a-0001EsuBft1002_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 4630..5442 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_9a-0001-exonEsuBft1002_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 4513..4681 +
EsuBft1002_9a-0001-exonagat-exon-62798Ectocarpus subulatus male Bft15bexonScaffold_228 5023..5102 +
EsuBft1002_9a-0001-exonagat-exon-62797Ectocarpus subulatus male Bft15bexonScaffold_228 5320..6694 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_9a-0001-exonagat-five_prime_utr-9Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 4513..4629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_9a-0001-cdsEsuBft1002_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 4630..4681 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_9a-0001-exonagat-three_prime_utr-19Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 5443..6694 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1002_9a-0001 ID=EsuBft1002_9a-0001|Name=EsuBft1002_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1624bp|location=Sequence derived from alignment at Scaffold_228:4513..6694+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTGTTTTCGGAAACTTTAACCGGGGGGTCGTCTCACGCTTCCGTCCTCG
TTTTACTTCAGCCCTCCGTCCCCTCCGCTTGTTGCGTGTGCCGACTCCCT
CTCTCAGTTATCGCGTCATGCTGCTGGTAGCAATCGCAGCCATCAAGCTG
GGCTTAGCGGAAGGCACACTGCTGTTTGACTTGCCATCGGGTTTGAAGTG
CGCGTGGTACAGCCTGTCGCACCCTGCCCAGTACGCGGTATTGATCATGA
CGCTGGGATGCCTGTACGGGGTGAACCGGCTTTTCGACAAGCTTGATAGT
GCTATGAATGCTCGACTCTCCTGCGCGACGCGCAACTGGATGCAACAGAG
GAGGGAGGCGATTGGGATGTAGGGAAAACCGAATCCAGGCTTAAGCGACC
ACGTATGAGCATATAGATAAGGAAGTGGTACACGCTGGCTCTGGAGGAGG
ATCTGGAAGTGCGGGATTCGGTTGTTTTCCGTCAATGCTGGAGGAGGATC
TGGAGGTGCGGGGTTCGGTTGTTTTCGTCAATGCTGGAGGAGGATCTGGA
AGTGCGGGATTCGGTTGTTTTCCGTCAATGCTGGAGGAGGATCTGGAGGT
GCGGGGTTCGGTTGTTTTCGTCAATGCTGGAGGAGGATCTGGAAGTGCGG
GATTCGGTTGTTTTCCGTCAATGCTGGAGGAGGATCTGGAGGTGCGGGGT
TCGGTTGTTTTCGTCAATGCTGGAGGAGGATCTGGAAGTGCGGGATTCGG
TTGTTTTCCGTCAATGCTGCGGATCGCAAGAGTTGCATATCGTTCGTCAC
AAGACCGACTTGGAGACTGGGCGCGGAGAAGCTTGGGTGGAACGCATTTG
GGCCTATTTTGCTATGGGCGCGTTCCCGGCATCCAACCAAATTTGAATTC
CCACTTGGTTGTTGGCGCTCGAGGGATGCTTTGCCAGTCTCAGGCAGAGT
CCTACGGTTCATTTGGGTGGAGCAGATGGAGGTGGGGATCAGTCGTTTTC
CTTCAATATTGGGATCGCAAGAGTTGCGCATCGTTAGTCAGCAAACCGAG
TTGGAGATTGGGTACGGAACAGCTTGGGTATGACGCAATTGGATTTTTCC
TTGAGACGGGCACGTGTCCGGGAAAAGAGCTCAAAACGTTGCCACTGCGC
TGTTGGCGCTCGAGGGGTGCTTTGCTCGTCTCAGGCAGTCTGTTTAAGGT
TAATGTTGGTTCATGAATATAGTCAGGGATCTGTCGTTTTTCTTCAACGT
TGCGGATCGTCCGTGTTGCTTCTCCGTTGTACGCAATCAGAGTTGGCCAG
CGGAGCAGGTTGAGTGTGACGCAATCGATCTACCTTGAGATGGGCGCGTT
CCCGGCAAACGACCCCCAAAAACGAATTTCTACTTGCCTATTGGACCTCG
ATGGGTGCTGTCGCCAGTCCCAGGCTGTTTCTTACGGTGCATTTAGTTGA
AGGATTGTAAGGAGTTGGGTATGAAAGAGATGTGCTTGTAGTTTGTTGTT
TATGTGTCTATCCGAGCGGCAGCCTTTACGGCTAAGAGAAGTCAGGACAA
ATCAATCGCTGCTGCGTGTTTTGCCCCAGCTTTGTGGGACTCATGCATGG
CCCAACACTGAACAATACGTCATT
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protein sequence of EsuBft1002_9a-0001

>EsuBft1002_9 ID=EsuBft1002_9|Name=EsuBft1002_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=84bp
MLLVAIAAIKLGLAEGTLLFDLPSGLKCAWYSLSHPAQYAVLIMTLGCLY
GVNRLFDKLDSAMNARLSCATRNWMQQRREAIGM
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mRNA from alignment at Scaffold_228:4513..6694+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1002_9a-0001 ID=EsuBft1002_9a-0001|Name=EsuBft1002_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2182bp|location=Sequence derived from alignment at Scaffold_228:4513..6694+ (Ectocarpus subulatus male Bft15b)
TCTGTTTTCGGAAACTTTAACCGGGGGGTCGTCTCACGCTTCCGTCCTCG
TTTTACTTCAGCCCTCCGTCCCCTCCGCTTGTTGCGTGTGCCGACTCCCT
CTCTCAGTTATCGCGTCATGCTGCTGGTAGCAATCGCAGCCATCAAGCTG
GGCTTAGCGGAAGGCACACGTGAGTGACGAGGCTCGCGTTGGTATTTTAC
TTGCTGGGAAGAAGCCGCATCATTCGAAATAGCGCACGTACCTACTGCTT
TTCGTTTTATCATTGACTTGGTGTTTGACCTGAATGGCAAGCTAGCCAGC
GACCACGGGAATCGACCGCGCAAACTGATAAATCAGTACGGAAAATGGAG
GTAGAAACTGGGCAGAGAGGTCGGAATGGCTGTTCACGTGAAGACCATAA
CAACGTTTTCGCGCTATCTACGTGGGCCATGACATGTTATGAACGGTTCC
TCCTCACCCACCGCGTTGCTGCTGCTGCTGCTGCTGCTATTGTTGTTCCG
TGCGGTGCAGTGCTGTTTGACTTGCCATCGGGTTTGAAGTGCGCGTGGTA
CAGCCTGTCGCACCCTGCCCAGTACGCGGTATTGATCATGGTGAGTGCGC
TCTGACTTTCCCTTCATGCCGCCGCGGAGCGTCGAATTCCACGGTGCACC
GCTGTAGGAACGCCCCGCATACAAGATACTGCCGCTGGAGTGCCGAAATA
CATGCGAAGTTTTTCTTGTCCTGAGAGAGAAGAGTTCTTTGCCGACGCCA
CCCCGGCCCTCCCCACCTCGCTTGGATGCGTGCACCTTCGGCTCCGGTTT
TTCGCAGACGCTGGGATGCCTGTACGGGGTGAACCGGCTTTTCGACAAGC
TTGATAGTGCTATGAATGCTCGACTCTCCTGCGCGACGCGCAACTGGATG
CAACAGAGGAGGGAGGCGATTGGGATGTAGGGAAAACCGAATCCAGGCTT
AAGCGACCACGTATGAGCATATAGATAAGGAAGTGGTACACGCTGGCTCT
GGAGGAGGATCTGGAAGTGCGGGATTCGGTTGTTTTCCGTCAATGCTGGA
GGAGGATCTGGAGGTGCGGGGTTCGGTTGTTTTCGTCAATGCTGGAGGAG
GATCTGGAAGTGCGGGATTCGGTTGTTTTCCGTCAATGCTGGAGGAGGAT
CTGGAGGTGCGGGGTTCGGTTGTTTTCGTCAATGCTGGAGGAGGATCTGG
AAGTGCGGGATTCGGTTGTTTTCCGTCAATGCTGGAGGAGGATCTGGAGG
TGCGGGGTTCGGTTGTTTTCGTCAATGCTGGAGGAGGATCTGGAAGTGCG
GGATTCGGTTGTTTTCCGTCAATGCTGCGGATCGCAAGAGTTGCATATCG
TTCGTCACAAGACCGACTTGGAGACTGGGCGCGGAGAAGCTTGGGTGGAA
CGCATTTGGGCCTATTTTGCTATGGGCGCGTTCCCGGCATCCAACCAAAT
TTGAATTCCCACTTGGTTGTTGGCGCTCGAGGGATGCTTTGCCAGTCTCA
GGCAGAGTCCTACGGTTCATTTGGGTGGAGCAGATGGAGGTGGGGATCAG
TCGTTTTCCTTCAATATTGGGATCGCAAGAGTTGCGCATCGTTAGTCAGC
AAACCGAGTTGGAGATTGGGTACGGAACAGCTTGGGTATGACGCAATTGG
ATTTTTCCTTGAGACGGGCACGTGTCCGGGAAAAGAGCTCAAAACGTTGC
CACTGCGCTGTTGGCGCTCGAGGGGTGCTTTGCTCGTCTCAGGCAGTCTG
TTTAAGGTTAATGTTGGTTCATGAATATAGTCAGGGATCTGTCGTTTTTC
TTCAACGTTGCGGATCGTCCGTGTTGCTTCTCCGTTGTACGCAATCAGAG
TTGGCCAGCGGAGCAGGTTGAGTGTGACGCAATCGATCTACCTTGAGATG
GGCGCGTTCCCGGCAAACGACCCCCAAAAACGAATTTCTACTTGCCTATT
GGACCTCGATGGGTGCTGTCGCCAGTCCCAGGCTGTTTCTTACGGTGCAT
TTAGTTGAAGGATTGTAAGGAGTTGGGTATGAAAGAGATGTGCTTGTAGT
TTGTTGTTTATGTGTCTATCCGAGCGGCAGCCTTTACGGCTAAGAGAAGT
CAGGACAAATCAATCGCTGCTGCGTGTTTTGCCCCAGCTTTGTGGGACTC
ATGCATGGCCCAACACTGAACAATACGTCATT
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Coding sequence (CDS) from alignment at Scaffold_228:4513..6694+

>EsuBft1002_9a-0001 ID=EsuBft1002_9a-0001|Name=EsuBft1002_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=255bp|location=Sequence derived from alignment at Scaffold_228:4513..6694+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGGTAGCAATCGCAGCCATCAAGCTGGGCTTAGCGGAAGGCAC
ACTGCTGTTTGACTTGCCATCGGGTTTGAAGTGCGCGTGGTACAGCCTGT
CGCACCCTGCCCAGTACGCGGTATTGATCATGACGCTGGGATGCCTGTAC
GGGGTGAACCGGCTTTTCGACAAGCTTGATAGTGCTATGAATGCTCGACT
CTCCTGCGCGACGCGCAACTGGATGCAACAGAGGAGGGAGGCGATTGGGA
TGTAG
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