EsuBft1002_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1002_4a-0001
Unique Name	EsuBft1002_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:49532..52186 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LN28
ProteomeId	EsuBft1002_4
Protein domains	PTHR19303
Protein domains	IPR004875
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	195
Hectar predicted targeting category	other localisation
Evalue	1.13e-40
EggNOG OGs	2CZS4@1\|root,2SBGG@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	DDE superfamily endonuclease
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1002_4a	EsuBft1002_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 49532..52186 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1002_4a-0001-exon	agat-exon-62779	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 49532..49697 +
EsuBft1002_4a-0001-exon	EsuBft1002_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 49985..49991 +
EsuBft1002_4a-0001-exon	agat-exon-62780	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 50410..52186 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1002_4a-0001-cds	EsuBft1002_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 49532..49697 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1002_4a-0001-exon	agat-three_prime_utr-15	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 51329..52186 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1002_4a-0001	EsuBft1002_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 49532..51328 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:49532..52186+
coding sequence from alignment at Scaffold_228:49532..52186+

spliced messenger RNA

>EsuBft1002_4a-0001 ID=EsuBft1002_4a-0001|Name=EsuBft1002_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1950bp|location=Sequence derived from alignment at Scaffold_228:49532..52186+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGGCACCCGGGGTTGTCGGAGCGAGCCACCCACATCTACGAAGC
AAACCGGATCAACGAAGACGACGAGCCTCGCCTTGAAGCCTTCCACGAGA
CATGGGAAGCGTACCTCGCGGAGACCAAGCTCACGCCGGACCGCATCATC
AACACGGACGAGACAAGGCTCATGTTCCACTCCGCAAGGTACAAAGTCGG
GGAAGGCTATCGTGTCAACAGGCACCAAGGTACCCGGCGCGAGGCGCTCC
AACTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGACGGCCA
CACCTACAACCCTATCATCATCTACAAAGGCCAGCGCATGCAACCCGCTT
GGATCCAGGACAGAACAGCGTCCCCGATGCGAAGTACACCGTCACGGGGT
CATCCTTCGTCCAGAGCCACGTGTTCCTCGACTACCTTCGAGACCTCCGC
GAACAGCTCGATGCACGCGGCTTGCAGGGCAAAGGTGCCCTTGTGCTCGA
CGGCCACGCCTCGCACACGACCTTCGACGCCATCAGCTTGGCCATCTCTC
TGGACATCGACCTCTTCCAGCTCCCGTCCCACACATCGCACATCACCCAG
CCCTTGGAGGTTGGTACCTTCGGAACCTTCAAGAAGGAGCTCACCAGGGT
GCTCACGGCCTACCCACTGAAAATCGGGGGAAGGAGTCCGGTGAAGCGCG
ACATGGCTGGCGTGATTGCGGAGGCATGGAGAAGGAGCTTCACGCCTGCG
AACAACATGGCGGCGTTCAAAGGGGCGGGTTTGTGGCCGGTGAACATGGA
AAAGGCCATCAGCCGACTACACAGCAAGAGGAAGCAATGGGAGAATGACC
GCCCTATCCCTGAAGACCTCGCCGTCGTTGCCTCCAAGAAGCAGTTCGAA
GAAGATCTCAGCCACGCTGCCCTCCTGGAGCTGAAACGACAGGGAGTGAT
GATCGAGGGGCTCCGCGTGAACAGCGTGTTCCTCGGCGGGCTCACCCGCC
TCACCGAGCACTCCAAGTCTTTCGCGACCGTTCGGGCGGGCGGGGAGAAA
GCCCGAGGGCGGTCTCCAGTCCGCCGAAGAACACCTTGCTAAGGCCAGGA
AGGACAAAGAAGAGAAGGAGGCAGCTGAGAAAGTAAAGGCGGACAACGCC
AAGGCCCGTACAGATGCAAGGGCAGCGGGGGAGGCCAATCTTGGGCAGGG
CGGCGGGCGGAGCGGCGGGCGGGGAGGCGGGTGCGGCGGGCGGGGAGCTG
GAGGGCGAGGCGCAGGGAGGAGNCGGAGGTTGGGGGGCGCGGCTGTGGTG
GGGGTCAGGAAGGGCGAGACGGGCGCGGCCAGGGACAGGGTGGCCGGGGC
CGCCCCGCTGGAGCTCGCGGAGAGGGAAGGGGGGCTGGTCGGCGAGTGGG
GGCCGGTGCTCGCGTCCAAGGAGGAGCGGGACGGCCGAGAGGGGCGGTGG
TTCCCTTGGTTCAGCCGCCGCCGCCGGCGGCCCCTTCGTCCTCTCGAGGA
CGGAAACAAACCCCGACACCAATCGTTGATGTGTAGACTAGATGCTGTAC
GGTTATCGTTTTTTTATTCGAGTGAAGGATCAATTATTCGAGTGAGACAT
ACAGAAAAGGTCAGTTGAGTGTCGAGGTGCCGATATGCATTCCAGGTTTG
TGCTTCAACAGCTCTTGGGGGTAGTTTTCGAGCGTCCCACGGGGGGGAGG
GGGGATGGGGGGTGTAGAGGTGTTCTCCGGAGCCCCGGGACGTTGAAATG
CTGTCCCCGGGCCTGAAGGGCTATTGTTTTCTTTTTGCTGCGTCGCGACT
TGAGCTGATCGTCTTGAACGAACCTTTCGACGGGGCATTCGAGTGGTGGG
AAACAGGTGCGGTTTTCTGCGAGAAGTCTCACCGCAGTGCCAAACTGCTT
TTTGCCTGGCCCAGTTTACGTGCTTGAATGTATGTAGTCTATGTAAAGAG

protein sequence of EsuBft1002_4a-0001

>EsuBft1002_4 ID=EsuBft1002_4|Name=EsuBft1002_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=363bp
MARHPGLSERATHIYEANRINEDDEPRLEAFHETWEAYLAETKLTPDRII
NTDETRLMFHSARYKVGEGYRVNRHQGTRREALQLARKYDGGRQHRRRRP
HLQPYHHLQRPAHATRLDPGQNSVPDAKYTVTGSSFVQSHVFLDYLRDLR
EQLDARGLQGKGALVLDGHASHTTFDAISLAISLDIDLFQLPSHTSHITQ
PLEVGTFGTFKKELTRVLTAYPLKIGGRSPVKRDMAGVIAEAWRRSFTPA
NNMAAFKGAGLWPVNMEKAISRLHSKRKQWENDRPIPEDLAVVASKKQFE
EDLSHAALLELKRQGVMIEGLRVNSVFLGGLTRLTEHSKSFATVRAGGEK
ARGRSPVRRRTPC

mRNA from alignment at Scaffold_228:49532..52186+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1002_4a-0001 ID=EsuBft1002_4a-0001|Name=EsuBft1002_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2655bp|location=Sequence derived from alignment at Scaffold_228:49532..52186+ (Ectocarpus subulatus male Bft15b)
ATGGCGAGGCACCCGGGGTTGTCGGAGCGAGCCACCCACATCTACGAAGC
AAACCGGATCAACGAAGACGACGAGCCTCGCCTTGAAGCCTTCCACGAGA
CATGGGAAGCGTACCTCGCGGAGACCAAGCTCACGCCGGACCGCATCATC
AACACGGACGAGACAAGTGAGTTAGGGCAAGGGCTGAGGTGTCAGTGGTG
TCAGTATCGACTGCTGTGGGTTCGTAGGCGAAGTACCAGCAGCACTGCGA
TGTGCGATGTTTGTCACAACAAAGCGGAGCTGCTGCTGCTGCAAAAAAAA
AAAACAGCAGTTGTTCCGCATATCTTTCCGAGGCCGCTGCTGCTGGCCAC
GCTTGTAGCACACAACGCGCATATGATGCTGGGTCCGGTTGAGGGTTCAG
CATGCAACAATCCCTGTGGTCATCTCAGTTATACTCTAGCACAGAAATGG
TAGGGCTCATGTACGATATTCTACACGGTGTTTTTGTTGTGTGCCACACG
CGACAGCGGGCGTGGGCGGTGTTGGTCCGCATGCACGTGCGTTGCTAATG
CTGTGCAAAGTGCAGTCAGGCCGAGACTTGAGTAGGACGCTTTGCTTTTG
TAAACCCACCTTGGTTTCGAGCTCAATGTAAACTTTCATGGGTGTGGGGT
TGTTGATTCACACCCAAAGTCTAAACGAATCCGACTGCTGTTTAAGAAAA
AAAATGGTCCCGTCACCACCGCTGTGTGCCACCGCCCGGTGCGAGCTGCG
CTCATTTGCGTGTGTGCGCGCGCTTTTTTGTGTGTGCGAGCGCTGCTGCT
GCGAAAGTGTGTGTACTCTACTGATTGTTCGACTGCCTCCACCCCCGATG
CACGCGCGTTCTCCGGTGTGTATTGTAGGTTCCACTCCGCAAGGTACAAA
GTCGGGGAAGGCTATCGTGTCAACAGGCACCAAGGTACCCGGCGCGAGGC
GCTCCAACTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGAC
GGCCACACCTACAACCCTATCATCATCTACAAAGGCCAGCGCATGCAACC
CGCTTGGATCCAGGACAGAACAGCGTCCCCGATGCGAAGTACACCGTCAC
GGGGTCATCCTTCGTCCAGAGCCACGTGTTCCTCGACTACCTTCGAGACC
TCCGCGAACAGCTCGATGCACGCGGCTTGCAGGGCAAAGGTGCCCTTGTG
CTCGACGGCCACGCCTCGCACACGACCTTCGACGCCATCAGCTTGGCCAT
CTCTCTGGACATCGACCTCTTCCAGCTCCCGTCCCACACATCGCACATCA
CCCAGCCCTTGGAGGTTGGTACCTTCGGAACCTTCAAGAAGGAGCTCACC
AGGGTGCTCACGGCCTACCCACTGAAAATCGGGGGAAGGAGTCCGGTGAA
GCGCGACATGGCTGGCGTGATTGCGGAGGCATGGAGAAGGAGCTTCACGC
CTGCGAACAACATGGCGGCGTTCAAAGGGGCGGGTTTGTGGCCGGTGAAC
ATGGAAAAGGCCATCAGCCGACTACACAGCAAGAGGAAGCAATGGGAGAA
TGACCGCCCTATCCCTGAAGACCTCGCCGTCGTTGCCTCCAAGAAGCAGT
TCGAAGAAGATCTCAGCCACGCTGCCCTCCTGGAGCTGAAACGACAGGGA
GTGATGATCGAGGGGCTCCGCGTGAACAGCGTGTTCCTCGGCGGGCTCAC
CCGCCTCACCGAGCACTCCAAGTCTTTCGCGACCGTTCGGGCGGGCGGGG
AGAAAGCCCGAGGGCGGTCTCCAGTCCGCCGAAGAACACCTTGCTAAGGC
CAGGAAGGACAAAGAAGAGAAGGAGGCAGCTGAGAAAGTAAAGGCGGACA
ACGCCAAGGCCCGTACAGATGCAAGGGCAGCGGGGGAGGCCAATCTTGGG
CAGGGCGGCGGGCGGAGCGGCGGGCGGGGAGGCGGGTGCGGCGGGCGGGG
AGCTGGAGGGCGAGGCGCAGGGAGGAGNCGGAGGTTGGGGGGCGCGGCTG
TGGTGGGGGTCAGGAAGGGCGAGACGGGCGCGGCCAGGGACAGGGTGGCC
GGGGCCGCCCCGCTGGAGCTCGCGGAGAGGGAAGGGGGGCTGGTCGGCGA
GTGGGGGCCGGTGCTCGCGTCCAAGGAGGAGCGGGACGGCCGAGAGGGGC
GGTGGTTCCCTTGGTTCAGCCGCCGCCGCCGGCGGCCCCTTCGTCCTCTC
GAGGACGGAAACAAACCCCGACACCAATCGTTGATGTGTAGACTAGATGC
TGTACGGTTATCGTTTTTTTATTCGAGTGAAGGATCAATTATTCGAGTGA
GACATACAGAAAAGGTCAGTTGAGTGTCGAGGTGCCGATATGCATTCCAG
GTTTGTGCTTCAACAGCTCTTGGGGGTAGTTTTCGAGCGTCCCACGGGGG
GGAGGGGGGATGGGGGGTGTAGAGGTGTTCTCCGGAGCCCCGGGACGTTG
AAATGCTGTCCCCGGGCCTGAAGGGCTATTGTTTTCTTTTTGCTGCGTCG
CGACTTGAGCTGATCGTCTTGAACGAACCTTTCGACGGGGCATTCGAGTG
GTGGGAAACAGGTGCGGTTTTCTGCGAGAAGTCTCACCGCAGTGCCAAAC
TGCTTTTTGCCTGGCCCAGTTTACGTGCTTGAATGTATGTAGTCTATGTA
AAGAG

Coding sequence (CDS) from alignment at Scaffold_228:49532..52186+

>EsuBft1002_4a-0001 ID=EsuBft1002_4a-0001|Name=EsuBft1002_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1092bp|location=Sequence derived from alignment at Scaffold_228:49532..52186+ (Ectocarpus subulatus male Bft15b)
ATGGCGAGGCACCCGGGGTTGTCGGAGCGAGCCACCCACATCTACGAAGC
AAACCGGATCAACGAAGACGACGAGCCTCGCCTTGAAGCCTTCCACGAGA
CATGGGAAGCGTACCTCGCGGAGACCAAGCTCACGCCGGACCGCATCATC
AACACGGACGAGACAAGGCTCATGTTCCACTCCGCAAGGTACAAAGTCGG
GGAAGGCTATCGTGTCAACAGGCACCAAGGTACCCGGCGCGAGGCGCTCC
AACTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGACGGCCA
CACCTACAACCCTATCATCATCTACAAAGGCCAGCGCATGCAACCCGCTT
GGATCCAGGACAGAACAGCGTCCCCGATGCGAAGTACACCGTCACGGGGT
CATCCTTCGTCCAGAGCCACGTGTTCCTCGACTACCTTCGAGACCTCCGC
GAACAGCTCGATGCACGCGGCTTGCAGGGCAAAGGTGCCCTTGTGCTCGA
CGGCCACGCCTCGCACACGACCTTCGACGCCATCAGCTTGGCCATCTCTC
TGGACATCGACCTCTTCCAGCTCCCGTCCCACACATCGCACATCACCCAG
CCCTTGGAGGTTGGTACCTTCGGAACCTTCAAGAAGGAGCTCACCAGGGT
GCTCACGGCCTACCCACTGAAAATCGGGGGAAGGAGTCCGGTGAAGCGCG
ACATGGCTGGCGTGATTGCGGAGGCATGGAGAAGGAGCTTCACGCCTGCG
AACAACATGGCGGCGTTCAAAGGGGCGGGTTTGTGGCCGGTGAACATGGA
AAAGGCCATCAGCCGACTACACAGCAAGAGGAAGCAATGGGAGAATGACC
GCCCTATCCCTGAAGACCTCGCCGTCGTTGCCTCCAAGAAGCAGTTCGAA
GAAGATCTCAGCCACGCTGCCCTCCTGGAGCTGAAACGACAGGGAGTGAT
GATCGAGGGGCTCCGCGTGAACAGCGTGTTCCTCGGCGGGCTCACCCGCC
TCACCGAGCACTCCAAGTCTTTCGCGACCGTTCGGGCGGGCGGGGAGAAA
GCCCGAGGGCGGTCTCCAGTCCGCCGAAGAACACCTTGCTAA