EsuBft1001_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1001_5a-0001
Unique Name	EsuBft1001_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:78496..79104 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1001_5
Protein domains	PTHR32134
Owner	apollo_admin@sb-roscoff.fr
Note	calmodulin-binding protein os:dictyostelium discoideum gn:cmbb pe:1 sv:1 [Automatic annotation]
Nb exon	1
Length	609
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1001_5a	EsuBft1001_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 78496..79104 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1001_5a-0001-exon	EsuBft1001_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 78496..79104 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1001_5a-0001-cds	EsuBft1001_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 78496..79104 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1001_5a-0001	EsuBft1001_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 78496..79104 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:78496..79104-
coding sequence from alignment at Scaffold_30:78496..79104-

spliced messenger RNA

>EsuBft1001_5a-0001 ID=EsuBft1001_5a-0001|Name=EsuBft1001_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=609bp|location=Sequence derived from alignment at Scaffold_30:78496..79104- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGAGTGGTGTGGCCGGCCACGCTTGGGGAGATGTTGTTCGGAGG
CGGCTGCGAGAGCCGATTCAACCAGTCACTCGAAGGTATCAGTTGGCCTC
CTGGTTTAAGAAAGCTTTCCGTAGACAGCATTTTCGACAACTCCATTCAA
GGTGTCATCTTCGGAGATTCCATCGAGGAAATTCGTCTAGGAGGACAGTT
CAACCAGCCAATCGCTGCAGTACGGTGGCCCGTGGTTATCCAGCCGTTGA
CCGGCTGTCATTGGCCGGAGGCGTTGATCGCTCTGACGACCGGTGATGCG
TTCGCCCAGAGCCTGCAAGGCGTTATTTGGCCTGTGTCGCTTCAGAATCT
CACGTTCGGGTGTGCGTGGAACGGGGAACTGGGGGGTGCGGTACTCCCTG
ACACGCTCAAGGTTCTACGGTTGGGGGGGACTTTTGAAAGCCCAATAGCC
GGCATTAAGTTGCCTGAGGGCCTGCAGGAGGTGTCGTTCGCCTTGCACTT
CCAGGAGGTTGATGATGTTCGTTGGCCCAGGAACGTCCGTAGAGTGGTGC
TCCAGGATCACTTGAACAAAATTATTTGGCCGAACGCGCTACGTGGCCGT
TCACGCTAG

protein sequence of EsuBft1001_5a-0001

>EsuBft1001_5 ID=EsuBft1001_5|Name=EsuBft1001_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=202bp
MGGVVWPATLGEMLFGGGCESRFNQSLEGISWPPGLRKLSVDSIFDNSIQ
GVIFGDSIEEIRLGGQFNQPIAAVRWPVVIQPLTGCHWPEALIALTTGDA
FAQSLQGVIWPVSLQNLTFGCAWNGELGGAVLPDTLKVLRLGGTFESPIA
GIKLPEGLQEVSFALHFQEVDDVRWPRNVRRVVLQDHLNKIIWPNALRGR
SR

mRNA from alignment at Scaffold_30:78496..79104-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1001_5a-0001 ID=EsuBft1001_5a-0001|Name=EsuBft1001_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=609bp|location=Sequence derived from alignment at Scaffold_30:78496..79104- (Ectocarpus subulatus male Bft15b)
ATGGGCGGAGTGGTGTGGCCGGCCACGCTTGGGGAGATGTTGTTCGGAGG
CGGCTGCGAGAGCCGATTCAACCAGTCACTCGAAGGTATCAGTTGGCCTC
CTGGTTTAAGAAAGCTTTCCGTAGACAGCATTTTCGACAACTCCATTCAA
GGTGTCATCTTCGGAGATTCCATCGAGGAAATTCGTCTAGGAGGACAGTT
CAACCAGCCAATCGCTGCAGTACGGTGGCCCGTGGTTATCCAGCCGTTGA
CCGGCTGTCATTGGCCGGAGGCGTTGATCGCTCTGACGACCGGTGATGCG
TTCGCCCAGAGCCTGCAAGGCGTTATTTGGCCTGTGTCGCTTCAGAATCT
CACGTTCGGGTGTGCGTGGAACGGGGAACTGGGGGGTGCGGTACTCCCTG
ACACGCTCAAGGTTCTACGGTTGGGGGGGACTTTTGAAAGCCCAATAGCC
GGCATTAAGTTGCCTGAGGGCCTGCAGGAGGTGTCGTTCGCCTTGCACTT
CCAGGAGGTTGATGATGTTCGTTGGCCCAGGAACGTCCGTAGAGTGGTGC
TCCAGGATCACTTGAACAAAATTATTTGGCCGAACGCGCTACGTGGCCGT
TCACGCTAG

Coding sequence (CDS) from alignment at Scaffold_30:78496..79104-

>EsuBft1001_5a-0001 ID=EsuBft1001_5a-0001|Name=EsuBft1001_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=609bp|location=Sequence derived from alignment at Scaffold_30:78496..79104- (Ectocarpus subulatus male Bft15b)
ATGGGCGGAGTGGTGTGGCCGGCCACGCTTGGGGAGATGTTGTTCGGAGG
CGGCTGCGAGAGCCGATTCAACCAGTCACTCGAAGGTATCAGTTGGCCTC
CTGGTTTAAGAAAGCTTTCCGTAGACAGCATTTTCGACAACTCCATTCAA
GGTGTCATCTTCGGAGATTCCATCGAGGAAATTCGTCTAGGAGGACAGTT
CAACCAGCCAATCGCTGCAGTACGGTGGCCCGTGGTTATCCAGCCGTTGA
CCGGCTGTCATTGGCCGGAGGCGTTGATCGCTCTGACGACCGGTGATGCG
TTCGCCCAGAGCCTGCAAGGCGTTATTTGGCCTGTGTCGCTTCAGAATCT
CACGTTCGGGTGTGCGTGGAACGGGGAACTGGGGGGTGCGGTACTCCCTG
ACACGCTCAAGGTTCTACGGTTGGGGGGGACTTTTGAAAGCCCAATAGCC
GGCATTAAGTTGCCTGAGGGCCTGCAGGAGGTGTCGTTCGCCTTGCACTT
CCAGGAGGTTGATGATGTTCGTTGGCCCAGGAACGTCCGTAGAGTGGTGC
TCCAGGATCACTTGAACAAAATTATTTGGCCGAACGCGCTACGTGGCCGT
TCACGCTAG