Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4530.OS08T0125300-01 |
| ProteomeId | EsuBft1001_2 |
| Protein domains | Coil |
| Protein domains | PR01217 |
| Protein domains | IPR001584 |
| Protein domains | PTHR11439 |
| Protein domains | IPR012337 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 35493|Streptophyta |
| Length | 2560 |
| Evalue | 8.78e-20 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M5VU@4447|Liliopsida,3IIIB@38820|Poales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | gag-polypeptide of LTR copia-type |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0003824 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1001_2a-0001 ID=EsuBft1001_2a-0001|Name=EsuBft1001_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2560bp|location=Sequence derived from alignment at Scaffold_30:103271..106045+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ACAGGCAGCAGCTGGCGGCCAAAATTGTGACGGAGAAGAGGAAAAATAGT
GACGTGTTCAACGACAACCCCGACGGATTTTGCCGCTACCACCAGTCCGA
GCTTTACACCAACGAGCAGTGTCGTCTCCAGCAGCAACTGCGGCGCGCGC
GTTCGAGAGAAGGCGCCGCGGAACGCGGCTCGGGCGGCGGTAGCCAGCGA
GGGGGCAGACCGCCGCGGTGGCGGCCGATGGGTGAGGCTAGAACGGCAGC
AGCACCACACCGGTCATGGTGGCGGTGGCTGGAGCCAAGCCTCACCCCCC
CCGCGACCTCTTCGTGGACGTGGGCCTGGTGGTCGTCTGGGGCGTCACCC
GGGGGGTCGTGGGCCCGCGGGACGCCACAGCAGCGACGGGCGTGCCGAGA
GGGAACGGGCAGAGCGAGGCCCGAGGCACGCGCGTTCTTTGCCACGGAAG
AGAGCAGGCGTACGTTGTGTACTACGCCCACGATGGTGGTGGCTACTACG
AAGACTACGGCGACTACGACGACGGCTTCTACTACGAAGACGGCTATCAC
GATGCCTGGTACGCCCACTACGCCGGCGGCGGGGACAGCTACAGCTACCC
CTCAGGCAACGTCAGCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGAGCCTCTTTTGAGAGAAACTGCCCAGCAGAGAGGCATCGTGCTCACC
GGCAAGCTGGAACCGTGCACGGACTGCATGAAGGCGAAGGGCAGGCGAGG
GTCGGTGCCGCGGGGGCCGGGAGCGCGGGCGTCCAAGCCACTGGGGCGTG
TTCTCCTGGACCTGTGTGGGCCGCTGATGCCTTCTCTGGGCGGCAACCTC
TACCTGTACGTCGCCGTGGACAGCGCCTCGCGGTGGAACAAAGTCTACGG
TCTCCGGCGGAAGTCCGACGCGCTGGCGGCAACGAAAAGGCTGCTGGCGG
ACGTGGGGCGGTACGACCTCGGGCGCGTCGAGTGTTTCCGCGTCGATAAC
GGCACCGAGTGGACCCGTGGCTTCCGTCGCTTCTGCGATGACAACGGCAG
CGGCGTCGAGGTCACACCTCCTGGCGTTCCACAGTACAACGGCGTCGTCG
AGAGCGCCATCTGGCGCATCATGAAGGCCGGCATGGCCGCTCGCCGCAGC
GCCGCCCGTGTGCTCAACGTCGACTTCGCCTCCATCCCCGGCATCGACGA
GCGCGGTGACCGTCTTTGGATGGAATCGGCGAAATGGGCCGCCGACGCTC
TCAACCAATCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAG
ATGTTCACCGGCGAGCAGGGGCCTTTCCGCGTGCTGCCGTTCTTCCAGCC
CGGCTTCATGCGTGAGGATCGCCGCACCAAGCTCGACGACCAGGCCACGC
TCTGCTATAACCTCAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAG
GTCCTCAAGGCGTCCACCGGCCGCATCGTCTATACCAACAACGTGTCGTG
GGTGACGTCGGCGCCAACCGGTGAGGGGGGTTCCGCTGGTATCACCGCTG
CGCCGACACCCCCCCCGTTCACGCCGCCGGTCGTCTCGATCAACTTTGGC
CCAGCACCGACGCCTTCGACCGCAGCACTGTCGCCGCCAGCGCCCACGCC
GTCGCCCGCCCCCGCTCCCGCTGCCGCTTCGCCCCCTGCCGGAATGCCGC
CGCCAGCGACCACGCCGCCGCCCGCTCTCACGCCTTCACAACCGCCCTCT
GCCACTTCGCCGTCATCGTCGGCGACCCCCGCTCCTGGCCAGCCGTCCTC
TGCCTCTTCGCTGTCACCGTCGGCGACCCCAGATCCAGACCAGCCGCCGC
CGCCGCCGGACCCCGCGATGCCCCCGCGTACGGCTCACGCCATGCGGCAG
CTTCGCCCGGGTACAAAGGCCGAGGGGAGCTGGGGGGGCCGGAGGCCGGA
GAGCCGGGGGGAGCGGACCGGAGGACAGGCGGGAGCACTCGCAGCTGTGG
ACCCGGGGGCTGGAGGAGCGGGCTTTCCACTCGCATTTGCCACGCTCCTC
GCCACCCGGGAAGACATCGACGCCACGCTGCGAGACCAGCGCCCGCCGGA
GCAACGCCCTGACCTTCCTCACTGCCAGGCCAGCGACCTTCGTGTCCCTA
AGAGCTACAAAGAGGCCATGGCGTCGGAGCACCGGCGCCTTCGGAGCTAC
TCTATGCAAGGGGAGTTTTATGGCTTGTTGGAAGCGAGGAGTCTTACTCC
GGCGAAGTAG back to topprotein sequence of EsuBft1001_2a-0001 >EsuBft1001_2 ID=EsuBft1001_2|Name=EsuBft1001_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=764bp
MVAVAGAKPHPPRDLFVDVGLVVVWGVTRGVVGPRDATAATGVPRGNGQS
EARGTRVLCHGREQAYVVYYAHDGGGYYEDYGDYDDGFYYEDGYHDAWYA
HYAGGGDSYSYPSGNVSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPLLRETAQQRGIVLTGKLEP
CTDCMKAKGRRGSVPRGPGARASKPLGRVLLDLCGPLMPSLGGNLYLYVA
VDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRVECFRVDNGTEWT
RGFRRFCDDNGSGVEVTPPGVPQYNGVVESAIWRIMKAGMAARRSAARVL
NVDFASIPGIDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGE
QGPFRVLPFFQPGFMREDRRTKLDDQATLCYNLNGGDNHPSGTVKVLKAS
TGRIVYTNNVSWVTSAPTGEGGSAGITAAPTPPPFTPPVVSINFGPAPTP
STAALSPPAPTPSPAPAPAAASPPAGMPPPATTPPPALTPSQPPSATSPS
SSATPAPGQPSSASSLSPSATPDPDQPPPPPDPAMPPRTAHAMRQLRPGT
KAEGSWGGRRPESRGERTGGQAGALAAVDPGAGGAGFPLAFATLLATRED
IDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRRLRSYSMQGE
FYGLLEARSLTPAK back to topmRNA from alignment at Scaffold_30:103271..106045+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1001_2a-0001 ID=EsuBft1001_2a-0001|Name=EsuBft1001_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2775bp|location=Sequence derived from alignment at Scaffold_30:103271..106045+ (Ectocarpus subulatus male Bft15b)
ACAGGCAGCAGCTGGCGGCCAAAATTGTGACGGAGAAGAGGAAAAATAGT
GACGTGTTCAACGACAACCCCGACGGATTTTGCCGCTACCACCAGTCCGA
GCTTTACACCAACGAGCAGTGTCGTCTCCAGCAGCAACTGCGGCGCGCGC
GTTCGAGAGAAGGCGCCGCGGAACGCGGCTCGGGCGGCGGTAGCCAGCGA
GGGGGCAGACCGCCGCGGTGGCGGCCGATGGGTGAGGCTAGAACGGCAGC
AGCACCACACCGGTCATGGTGGCGGTGGCTGGAGCCAAGCCTCACCCCCC
CCGCGACCTCTTCGTGGACGTGGGCCTGGTGGTCGTCTGGGGCGTCACCC
GGGGGGTCGTGGGCCCGCGGGACGCCACAGCAGCGACGGGCGTGCCGAGA
GGGAACGGGCAGAGCGAGGCCCGAGGCACGCGCGTTCTTTGCCACGGAAG
AGAGCAGGCGTACGTTGTGTACTACGCCCACGATGGTGGTGGCTACTACG
AAGACTACGGCGACTACGACGACGGCTTCTACTACGAAGACGGCTATCAC
GATGCCTGGTACGCCCACTACGCCGGCGGCGGGGACAGCTACAGCTACCC
CTCAGGGTACGAAGGCAGCCGTTCATCGGACGGCGGCATCCACTACGTGT
ACTACCCTCCTGCCGGCGAAGATTCGTCATCCGAGCAGCAACGTCAGCCC
CCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTCTTTTGAGAG
AAACTGCCCAGCAGAGAGGCATCGTGCTCACCGGCAAGCTGGAACCGTGC
ACGGACTGCATGAAGGCGAAGGGCAGGCGAGGGTCGGTGCCGCGGGGGCC
GGGAGCGCGGGCGTCCAAGCCACTGGGGCGTGTTCTCCTGGACCTGTGTG
GGCCGCTGATGCCTTCTCTGGGCGGCAACCTCTACCTGTACGTCGCCGTG
GACAGCGCCTCGCGGTGGAACAAAGTCTACGGTCTCCGGCGGAAGTCCGA
CGCGCTGGCGGCAACGAAAAGGCTGCTGGCGGACGTGGGGCGGTACGACC
TCGGGCGCGTCGAGTGTTTCCGCGTCGATAACGGCACCGAGTGGACCCGT
GGCTTCCGTCGCTTCTGCGATGACAACGGCAGCGGCGTCGAGGTCACACC
TCCTGGCGTTCCACAGTACAACGGCGTCGTCGAGAGCGCCATCTGGCGCA
TCATGAAGGCCGGCATGGCCGCTCGCCGCAGCGCCGCCCGTGTGCTCAAC
GTCGACTTCGCCTCCATCCCCGGCATCGACGAGCGCGGTGACCGTCTTTG
GATGGAATCGGCGAAATGGGCCGCCGACGCTCTCAACCAATCGGCGACCA
AGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTCACCGGCGAGCAG
GGGCCTTTCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCATGCGTGAGGA
TCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGCTATAACCTCAACG
GCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGCGTCCACC
GGCCGCATCGTCTATACCAACAACGTGTCGTGGGTGACGTCGGCGCCAAC
CGGTGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGACACCCCCCCCGT
TCACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCGACGCCTTCG
ACCGCAGCACTGTCGCCGCCAGCGCCCACGCCGTCGCCCGCCCCCGCTCC
CGCTGCCGCTTCGCCCCCTGCCGGAATGCCGCCGCCAGCGACCACGCCGC
CGCCCGCTCTCACGCCTTCACAACCGCCCTCTGCCACTTCGCCGTCATCG
TCGGCGACCCCCGCTCCTGGCCAGCCGTCCTCTGCCTCTTCGCTGTCACC
GTCGGCGACCCCAGATCCAGACCAGCCGCCGCCGCCGCCGGACCCCGCGA
TGCCCCCGCGTACGGCTCACGCCATGCGGCAGCTTCGCCCGGGTACAAAG
GCCGAGGGTATGACAGACCCGCGGCTGCCAAGCCGTACGAGATCGGGCAC
AAGGCACAGCACAGGACTCATCTCGATGCTAGATAAGAATACTCTGGTGT
CGATGCTGGAGGCTCGGGGCGCGGTGGACGAGGAGCCCAGGGAGCTGGGG
GGGCCGGAGGCCGGAGAGCCGGGGGGAGCGGACCGGAGGACAGGCGGGAG
CACTCGCAGCTGTGGACCCGGGGGCTGGAGGAGCGGGCTTTCCACTCGCA
TTTGCCACGCTCCTCGCCACCCGGGAAGACATCGACGCCACGCTGCGAGA
CCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCTCACTGCCAGGCCAGCG
ACCTTCGTGTCCCTAAGAGCTACAAAGAGGCCATGGCGTCGGAGCACCGG
CGCCTTCGGAGCTACTCTATGCAAGGGGAGTTTTATGGCTTGTTGGAAGC
GAGGAGTCTTACTCCGGCGAAGTAG back to topCoding sequence (CDS) from alignment at Scaffold_30:103271..106045+ >EsuBft1001_2a-0001 ID=EsuBft1001_2a-0001|Name=EsuBft1001_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2295bp|location=Sequence derived from alignment at Scaffold_30:103271..106045+ (Ectocarpus subulatus male Bft15b)
ATGGTGGCGGTGGCTGGAGCCAAGCCTCACCCCCCCCGCGACCTCTTCGT
GGACGTGGGCCTGGTGGTCGTCTGGGGCGTCACCCGGGGGGTCGTGGGCC
CGCGGGACGCCACAGCAGCGACGGGCGTGCCGAGAGGGAACGGGCAGAGC
GAGGCCCGAGGCACGCGCGTTCTTTGCCACGGAAGAGAGCAGGCGTACGT
TGTGTACTACGCCCACGATGGTGGTGGCTACTACGAAGACTACGGCGACT
ACGACGACGGCTTCTACTACGAAGACGGCTATCACGATGCCTGGTACGCC
CACTACGCCGGCGGCGGGGACAGCTACAGCTACCCCTCAGGCAACGTCAG
CCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTCTTTTGA
GAGAAACTGCCCAGCAGAGAGGCATCGTGCTCACCGGCAAGCTGGAACCG
TGCACGGACTGCATGAAGGCGAAGGGCAGGCGAGGGTCGGTGCCGCGGGG
GCCGGGAGCGCGGGCGTCCAAGCCACTGGGGCGTGTTCTCCTGGACCTGT
GTGGGCCGCTGATGCCTTCTCTGGGCGGCAACCTCTACCTGTACGTCGCC
GTGGACAGCGCCTCGCGGTGGAACAAAGTCTACGGTCTCCGGCGGAAGTC
CGACGCGCTGGCGGCAACGAAAAGGCTGCTGGCGGACGTGGGGCGGTACG
ACCTCGGGCGCGTCGAGTGTTTCCGCGTCGATAACGGCACCGAGTGGACC
CGTGGCTTCCGTCGCTTCTGCGATGACAACGGCAGCGGCGTCGAGGTCAC
ACCTCCTGGCGTTCCACAGTACAACGGCGTCGTCGAGAGCGCCATCTGGC
GCATCATGAAGGCCGGCATGGCCGCTCGCCGCAGCGCCGCCCGTGTGCTC
AACGTCGACTTCGCCTCCATCCCCGGCATCGACGAGCGCGGTGACCGTCT
TTGGATGGAATCGGCGAAATGGGCCGCCGACGCTCTCAACCAATCGGCGA
CCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTCACCGGCGAG
CAGGGGCCTTTCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCATGCGTGA
GGATCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGCTATAACCTCA
ACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGCGTCC
ACCGGCCGCATCGTCTATACCAACAACGTGTCGTGGGTGACGTCGGCGCC
AACCGGTGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGACACCCCCCC
CGTTCACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCGACGCCT
TCGACCGCAGCACTGTCGCCGCCAGCGCCCACGCCGTCGCCCGCCCCCGC
TCCCGCTGCCGCTTCGCCCCCTGCCGGAATGCCGCCGCCAGCGACCACGC
CGCCGCCCGCTCTCACGCCTTCACAACCGCCCTCTGCCACTTCGCCGTCA
TCGTCGGCGACCCCCGCTCCTGGCCAGCCGTCCTCTGCCTCTTCGCTGTC
ACCGTCGGCGACCCCAGATCCAGACCAGCCGCCGCCGCCGCCGGACCCCG
CGATGCCCCCGCGTACGGCTCACGCCATGCGGCAGCTTCGCCCGGGTACA
AAGGCCGAGGGGAGCTGGGGGGGCCGGAGGCCGGAGAGCCGGGGGGAGCG
GACCGGAGGACAGGCGGGAGCACTCGCAGCTGTGGACCCGGGGGCTGGAG
GAGCGGGCTTTCCACTCGCATTTGCCACGCTCCTCGCCACCCGGGAAGAC
ATCGACGCCACGCTGCGAGACCAGCGCCCGCCGGAGCAACGCCCTGACCT
TCCTCACTGCCAGGCCAGCGACCTTCGTGTCCCTAAGAGCTACAAAGAGG
CCATGGCGTCGGAGCACCGGCGCCTTCGGAGCTACTCTATGCAAGGGGAG
TTTTATGGCTTGTTGGAAGCGAGGAGTCTTACTCCGGCGAAGTAG back to top
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