EsuBft1001_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1001_2a-0001
Unique Name	EsuBft1001_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:103271..106045 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4530.OS08T0125300-01
ProteomeId	EsuBft1001_2
Protein domains	Coil
Protein domains	PR01217
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	35493\|Streptophyta
Length	2560
Evalue	8.78e-20
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M5VU@4447\|Liliopsida,3IIIB@38820\|Poales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	gag-polypeptide of LTR copia-type
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1001_2a	EsuBft1001_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 103271..106045 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1001_2a-0001-exon	agat-exon-110309	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 103271..103876 +
EsuBft1001_2a-0001-exon	agat-exon-110308	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 103959..105577 +
EsuBft1001_2a-0001-exon	EsuBft1001_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 105711..106045 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1001_2a-0001-exon	agat-five_prime_utr-6	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_30 103271..103535 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1001_2a-0001-cds	EsuBft1001_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 103536..103876 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1001_2a-0001	EsuBft1001_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 103536..106045 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:103271..106045+
coding sequence from alignment at Scaffold_30:103271..106045+

spliced messenger RNA

>EsuBft1001_2a-0001 ID=EsuBft1001_2a-0001|Name=EsuBft1001_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2560bp|location=Sequence derived from alignment at Scaffold_30:103271..106045+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACAGGCAGCAGCTGGCGGCCAAAATTGTGACGGAGAAGAGGAAAAATAGT
GACGTGTTCAACGACAACCCCGACGGATTTTGCCGCTACCACCAGTCCGA
GCTTTACACCAACGAGCAGTGTCGTCTCCAGCAGCAACTGCGGCGCGCGC
GTTCGAGAGAAGGCGCCGCGGAACGCGGCTCGGGCGGCGGTAGCCAGCGA
GGGGGCAGACCGCCGCGGTGGCGGCCGATGGGTGAGGCTAGAACGGCAGC
AGCACCACACCGGTCATGGTGGCGGTGGCTGGAGCCAAGCCTCACCCCCC
CCGCGACCTCTTCGTGGACGTGGGCCTGGTGGTCGTCTGGGGCGTCACCC
GGGGGGTCGTGGGCCCGCGGGACGCCACAGCAGCGACGGGCGTGCCGAGA
GGGAACGGGCAGAGCGAGGCCCGAGGCACGCGCGTTCTTTGCCACGGAAG
AGAGCAGGCGTACGTTGTGTACTACGCCCACGATGGTGGTGGCTACTACG
AAGACTACGGCGACTACGACGACGGCTTCTACTACGAAGACGGCTATCAC
GATGCCTGGTACGCCCACTACGCCGGCGGCGGGGACAGCTACAGCTACCC
CTCAGGCAACGTCAGCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGAGCCTCTTTTGAGAGAAACTGCCCAGCAGAGAGGCATCGTGCTCACC
GGCAAGCTGGAACCGTGCACGGACTGCATGAAGGCGAAGGGCAGGCGAGG
GTCGGTGCCGCGGGGGCCGGGAGCGCGGGCGTCCAAGCCACTGGGGCGTG
TTCTCCTGGACCTGTGTGGGCCGCTGATGCCTTCTCTGGGCGGCAACCTC
TACCTGTACGTCGCCGTGGACAGCGCCTCGCGGTGGAACAAAGTCTACGG
TCTCCGGCGGAAGTCCGACGCGCTGGCGGCAACGAAAAGGCTGCTGGCGG
ACGTGGGGCGGTACGACCTCGGGCGCGTCGAGTGTTTCCGCGTCGATAAC
GGCACCGAGTGGACCCGTGGCTTCCGTCGCTTCTGCGATGACAACGGCAG
CGGCGTCGAGGTCACACCTCCTGGCGTTCCACAGTACAACGGCGTCGTCG
AGAGCGCCATCTGGCGCATCATGAAGGCCGGCATGGCCGCTCGCCGCAGC
GCCGCCCGTGTGCTCAACGTCGACTTCGCCTCCATCCCCGGCATCGACGA
GCGCGGTGACCGTCTTTGGATGGAATCGGCGAAATGGGCCGCCGACGCTC
TCAACCAATCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAG
ATGTTCACCGGCGAGCAGGGGCCTTTCCGCGTGCTGCCGTTCTTCCAGCC
CGGCTTCATGCGTGAGGATCGCCGCACCAAGCTCGACGACCAGGCCACGC
TCTGCTATAACCTCAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAG
GTCCTCAAGGCGTCCACCGGCCGCATCGTCTATACCAACAACGTGTCGTG
GGTGACGTCGGCGCCAACCGGTGAGGGGGGTTCCGCTGGTATCACCGCTG
CGCCGACACCCCCCCCGTTCACGCCGCCGGTCGTCTCGATCAACTTTGGC
CCAGCACCGACGCCTTCGACCGCAGCACTGTCGCCGCCAGCGCCCACGCC
GTCGCCCGCCCCCGCTCCCGCTGCCGCTTCGCCCCCTGCCGGAATGCCGC
CGCCAGCGACCACGCCGCCGCCCGCTCTCACGCCTTCACAACCGCCCTCT
GCCACTTCGCCGTCATCGTCGGCGACCCCCGCTCCTGGCCAGCCGTCCTC
TGCCTCTTCGCTGTCACCGTCGGCGACCCCAGATCCAGACCAGCCGCCGC
CGCCGCCGGACCCCGCGATGCCCCCGCGTACGGCTCACGCCATGCGGCAG
CTTCGCCCGGGTACAAAGGCCGAGGGGAGCTGGGGGGGCCGGAGGCCGGA
GAGCCGGGGGGAGCGGACCGGAGGACAGGCGGGAGCACTCGCAGCTGTGG
ACCCGGGGGCTGGAGGAGCGGGCTTTCCACTCGCATTTGCCACGCTCCTC
GCCACCCGGGAAGACATCGACGCCACGCTGCGAGACCAGCGCCCGCCGGA
GCAACGCCCTGACCTTCCTCACTGCCAGGCCAGCGACCTTCGTGTCCCTA
AGAGCTACAAAGAGGCCATGGCGTCGGAGCACCGGCGCCTTCGGAGCTAC
TCTATGCAAGGGGAGTTTTATGGCTTGTTGGAAGCGAGGAGTCTTACTCC
GGCGAAGTAG

protein sequence of EsuBft1001_2a-0001

>EsuBft1001_2 ID=EsuBft1001_2|Name=EsuBft1001_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=764bp
MVAVAGAKPHPPRDLFVDVGLVVVWGVTRGVVGPRDATAATGVPRGNGQS
EARGTRVLCHGREQAYVVYYAHDGGGYYEDYGDYDDGFYYEDGYHDAWYA
HYAGGGDSYSYPSGNVSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPLLRETAQQRGIVLTGKLEP
CTDCMKAKGRRGSVPRGPGARASKPLGRVLLDLCGPLMPSLGGNLYLYVA
VDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRVECFRVDNGTEWT
RGFRRFCDDNGSGVEVTPPGVPQYNGVVESAIWRIMKAGMAARRSAARVL
NVDFASIPGIDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGE
QGPFRVLPFFQPGFMREDRRTKLDDQATLCYNLNGGDNHPSGTVKVLKAS
TGRIVYTNNVSWVTSAPTGEGGSAGITAAPTPPPFTPPVVSINFGPAPTP
STAALSPPAPTPSPAPAPAAASPPAGMPPPATTPPPALTPSQPPSATSPS
SSATPAPGQPSSASSLSPSATPDPDQPPPPPDPAMPPRTAHAMRQLRPGT
KAEGSWGGRRPESRGERTGGQAGALAAVDPGAGGAGFPLAFATLLATRED
IDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRRLRSYSMQGE
FYGLLEARSLTPAK

mRNA from alignment at Scaffold_30:103271..106045+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1001_2a-0001 ID=EsuBft1001_2a-0001|Name=EsuBft1001_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2775bp|location=Sequence derived from alignment at Scaffold_30:103271..106045+ (Ectocarpus subulatus male Bft15b)
ACAGGCAGCAGCTGGCGGCCAAAATTGTGACGGAGAAGAGGAAAAATAGT
GACGTGTTCAACGACAACCCCGACGGATTTTGCCGCTACCACCAGTCCGA
GCTTTACACCAACGAGCAGTGTCGTCTCCAGCAGCAACTGCGGCGCGCGC
GTTCGAGAGAAGGCGCCGCGGAACGCGGCTCGGGCGGCGGTAGCCAGCGA
GGGGGCAGACCGCCGCGGTGGCGGCCGATGGGTGAGGCTAGAACGGCAGC
AGCACCACACCGGTCATGGTGGCGGTGGCTGGAGCCAAGCCTCACCCCCC
CCGCGACCTCTTCGTGGACGTGGGCCTGGTGGTCGTCTGGGGCGTCACCC
GGGGGGTCGTGGGCCCGCGGGACGCCACAGCAGCGACGGGCGTGCCGAGA
GGGAACGGGCAGAGCGAGGCCCGAGGCACGCGCGTTCTTTGCCACGGAAG
AGAGCAGGCGTACGTTGTGTACTACGCCCACGATGGTGGTGGCTACTACG
AAGACTACGGCGACTACGACGACGGCTTCTACTACGAAGACGGCTATCAC
GATGCCTGGTACGCCCACTACGCCGGCGGCGGGGACAGCTACAGCTACCC
CTCAGGGTACGAAGGCAGCCGTTCATCGGACGGCGGCATCCACTACGTGT
ACTACCCTCCTGCCGGCGAAGATTCGTCATCCGAGCAGCAACGTCAGCCC
CCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTCTTTTGAGAG
AAACTGCCCAGCAGAGAGGCATCGTGCTCACCGGCAAGCTGGAACCGTGC
ACGGACTGCATGAAGGCGAAGGGCAGGCGAGGGTCGGTGCCGCGGGGGCC
GGGAGCGCGGGCGTCCAAGCCACTGGGGCGTGTTCTCCTGGACCTGTGTG
GGCCGCTGATGCCTTCTCTGGGCGGCAACCTCTACCTGTACGTCGCCGTG
GACAGCGCCTCGCGGTGGAACAAAGTCTACGGTCTCCGGCGGAAGTCCGA
CGCGCTGGCGGCAACGAAAAGGCTGCTGGCGGACGTGGGGCGGTACGACC
TCGGGCGCGTCGAGTGTTTCCGCGTCGATAACGGCACCGAGTGGACCCGT
GGCTTCCGTCGCTTCTGCGATGACAACGGCAGCGGCGTCGAGGTCACACC
TCCTGGCGTTCCACAGTACAACGGCGTCGTCGAGAGCGCCATCTGGCGCA
TCATGAAGGCCGGCATGGCCGCTCGCCGCAGCGCCGCCCGTGTGCTCAAC
GTCGACTTCGCCTCCATCCCCGGCATCGACGAGCGCGGTGACCGTCTTTG
GATGGAATCGGCGAAATGGGCCGCCGACGCTCTCAACCAATCGGCGACCA
AGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTCACCGGCGAGCAG
GGGCCTTTCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCATGCGTGAGGA
TCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGCTATAACCTCAACG
GCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGCGTCCACC
GGCCGCATCGTCTATACCAACAACGTGTCGTGGGTGACGTCGGCGCCAAC
CGGTGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGACACCCCCCCCGT
TCACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCGACGCCTTCG
ACCGCAGCACTGTCGCCGCCAGCGCCCACGCCGTCGCCCGCCCCCGCTCC
CGCTGCCGCTTCGCCCCCTGCCGGAATGCCGCCGCCAGCGACCACGCCGC
CGCCCGCTCTCACGCCTTCACAACCGCCCTCTGCCACTTCGCCGTCATCG
TCGGCGACCCCCGCTCCTGGCCAGCCGTCCTCTGCCTCTTCGCTGTCACC
GTCGGCGACCCCAGATCCAGACCAGCCGCCGCCGCCGCCGGACCCCGCGA
TGCCCCCGCGTACGGCTCACGCCATGCGGCAGCTTCGCCCGGGTACAAAG
GCCGAGGGTATGACAGACCCGCGGCTGCCAAGCCGTACGAGATCGGGCAC
AAGGCACAGCACAGGACTCATCTCGATGCTAGATAAGAATACTCTGGTGT
CGATGCTGGAGGCTCGGGGCGCGGTGGACGAGGAGCCCAGGGAGCTGGGG
GGGCCGGAGGCCGGAGAGCCGGGGGGAGCGGACCGGAGGACAGGCGGGAG
CACTCGCAGCTGTGGACCCGGGGGCTGGAGGAGCGGGCTTTCCACTCGCA
TTTGCCACGCTCCTCGCCACCCGGGAAGACATCGACGCCACGCTGCGAGA
CCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCTCACTGCCAGGCCAGCG
ACCTTCGTGTCCCTAAGAGCTACAAAGAGGCCATGGCGTCGGAGCACCGG
CGCCTTCGGAGCTACTCTATGCAAGGGGAGTTTTATGGCTTGTTGGAAGC
GAGGAGTCTTACTCCGGCGAAGTAG

Coding sequence (CDS) from alignment at Scaffold_30:103271..106045+

>EsuBft1001_2a-0001 ID=EsuBft1001_2a-0001|Name=EsuBft1001_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2295bp|location=Sequence derived from alignment at Scaffold_30:103271..106045+ (Ectocarpus subulatus male Bft15b)
ATGGTGGCGGTGGCTGGAGCCAAGCCTCACCCCCCCCGCGACCTCTTCGT
GGACGTGGGCCTGGTGGTCGTCTGGGGCGTCACCCGGGGGGTCGTGGGCC
CGCGGGACGCCACAGCAGCGACGGGCGTGCCGAGAGGGAACGGGCAGAGC
GAGGCCCGAGGCACGCGCGTTCTTTGCCACGGAAGAGAGCAGGCGTACGT
TGTGTACTACGCCCACGATGGTGGTGGCTACTACGAAGACTACGGCGACT
ACGACGACGGCTTCTACTACGAAGACGGCTATCACGATGCCTGGTACGCC
CACTACGCCGGCGGCGGGGACAGCTACAGCTACCCCTCAGGCAACGTCAG
CCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTCTTTTGA
GAGAAACTGCCCAGCAGAGAGGCATCGTGCTCACCGGCAAGCTGGAACCG
TGCACGGACTGCATGAAGGCGAAGGGCAGGCGAGGGTCGGTGCCGCGGGG
GCCGGGAGCGCGGGCGTCCAAGCCACTGGGGCGTGTTCTCCTGGACCTGT
GTGGGCCGCTGATGCCTTCTCTGGGCGGCAACCTCTACCTGTACGTCGCC
GTGGACAGCGCCTCGCGGTGGAACAAAGTCTACGGTCTCCGGCGGAAGTC
CGACGCGCTGGCGGCAACGAAAAGGCTGCTGGCGGACGTGGGGCGGTACG
ACCTCGGGCGCGTCGAGTGTTTCCGCGTCGATAACGGCACCGAGTGGACC
CGTGGCTTCCGTCGCTTCTGCGATGACAACGGCAGCGGCGTCGAGGTCAC
ACCTCCTGGCGTTCCACAGTACAACGGCGTCGTCGAGAGCGCCATCTGGC
GCATCATGAAGGCCGGCATGGCCGCTCGCCGCAGCGCCGCCCGTGTGCTC
AACGTCGACTTCGCCTCCATCCCCGGCATCGACGAGCGCGGTGACCGTCT
TTGGATGGAATCGGCGAAATGGGCCGCCGACGCTCTCAACCAATCGGCGA
CCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTCACCGGCGAG
CAGGGGCCTTTCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCATGCGTGA
GGATCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGCTATAACCTCA
ACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGCGTCC
ACCGGCCGCATCGTCTATACCAACAACGTGTCGTGGGTGACGTCGGCGCC
AACCGGTGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGACACCCCCCC
CGTTCACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCGACGCCT
TCGACCGCAGCACTGTCGCCGCCAGCGCCCACGCCGTCGCCCGCCCCCGC
TCCCGCTGCCGCTTCGCCCCCTGCCGGAATGCCGCCGCCAGCGACCACGC
CGCCGCCCGCTCTCACGCCTTCACAACCGCCCTCTGCCACTTCGCCGTCA
TCGTCGGCGACCCCCGCTCCTGGCCAGCCGTCCTCTGCCTCTTCGCTGTC
ACCGTCGGCGACCCCAGATCCAGACCAGCCGCCGCCGCCGCCGGACCCCG
CGATGCCCCCGCGTACGGCTCACGCCATGCGGCAGCTTCGCCCGGGTACA
AAGGCCGAGGGGAGCTGGGGGGGCCGGAGGCCGGAGAGCCGGGGGGAGCG
GACCGGAGGACAGGCGGGAGCACTCGCAGCTGTGGACCCGGGGGCTGGAG
GAGCGGGCTTTCCACTCGCATTTGCCACGCTCCTCGCCACCCGGGAAGAC
ATCGACGCCACGCTGCGAGACCAGCGCCCGCCGGAGCAACGCCCTGACCT
TCCTCACTGCCAGGCCAGCGACCTTCGTGTCCCTAAGAGCTACAAAGAGG
CCATGGCGTCGGAGCACCGGCGCCTTCGGAGCTACTCTATGCAAGGGGAG
TTTTATGGCTTGTTGGAAGCGAGGAGTCTTACTCCGGCGAAGTAG