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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2880.D8LSU5 |
ProteomeId | EsuBft1000_6 |
Protein domains | IPR006843 |
Protein domains | PTHR31906 |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 6 |
Max annot lvl | 2759|Eukaryota |
Length | 207 |
Hectar predicted targeting category | other localisation |
Evalue | 1.48e-139 |
EggNOG OGs | 2CY64@1|root,2S2BE@2759|Eukaryota |
Ec32 ortholog description | Plastid lipid-associated protein/fibrillin conserved domain |
Ec32 ortholog | Ec-26_001470.1 |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Description | PAP_fibrillin |
COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1000_6a-0001 ID=EsuBft1000_6a-0001|Name=EsuBft1000_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2079bp|location=Sequence derived from alignment at Scaffold_647:14705..21389- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CTCCTGTCTCGTAGCTCCTCACCTCTCCGTTCCTTGCGGGTTAGCTTTTC CCAACAGCAGCAGCAACACGCACCACCGCTGTTGTTGCCCACCCGCTCGA GGCGACACTTTAGTTATATCGGGAGGCATCGCTGCAACACGTCTTCCACC AAACCAGCGTGCTGCATTGCCAGGCGGACACCCTTTTTTGACCCGCGCAA CTTGAAGGCCTCCCTCCTGCTTGCGAAGAACCGCCGCATCAGCAGCATGA GGCGCAAGGAGCAAGTCCGCGTGGCGTTCCTCTTAGCCTTCGCGGCTTCG CCAGCAGCTGCATTCGGCTTCTCAGTCTTCAACCCTGCATCTCACAGGGT TACACCCGCAGCCGTGAGACGTGGCGGTGGTATCTGGGGCAGCAGCAGCA GCAGCAGCAGCAGCAGCACTAGCCGTTGCGGCTGGCAGCAGCAGCGGCGG CGCTTGGGGATGATGAGCTTCGAGGCAGGGGACTTCCCGAGCGACGTGGG GGACGCCGCGGGGTCGTCTGCGGTGCCGGCGGTGCTGGCCGACGACAACC CCGAGCTCAGAGAGACCATGAAACGCGAGGTTCTGTCCATCGCCGCCACT TCCAACAGAGGCCAAGTAGCCACGCAGGAAGAAAAGGATGCGGCAATGGA CCTGATTTTTCAGCTTGAGTCCCTGAACCCGACTCCGGATGCCACGAATG TCAACACCATCGGAGGGGCGTGGGAGCTGGTGTACACGGACACGCAACCA TTCCGTTGTTCCCCCTTTTTCATGGCCCTGGGGGAGGTGTTCGGCGAAGA AAAGGGCCAAGCGGAGACTTTGTTCTCGCTGCACCGAGCCGCAACTTCAA ACGGGGAGATCGGCAGGGTCAGGCAGACCATCAGCGAGTCTATGCTGGTG TCGGAGATTGATCTCAAGGTGGGGCTGCTTCCGGGCTTGCCGATGGCCCT CAAGGGCACCGTCGTCACGAAGGCACGGCTTAACCCCGTCAGCTCCGATT CTTTCACTGTCGTGGTCGAGAGCACGTCTGTGACCAACAACAACATACTG TCGTTCTTGGACGGTGCCGTTGAAGTGCCCGTCGAGCAGGTGTACAGCAC CCTCAGAGGCAGCGTTCCGGAGGCGAAGCTGTCCACGTACTACCTCGACG ATGACATGCGAATCAGCCGAATGTCCGACGATCATGTTTTCGTGTTCGTT CGGGCCCCGTAAGCATGTATCGGCAGAGGCTTGTGTACGAATCCGAAAAA GCGGACGTCTTCATCTCGCCTGATTTTGTTCATTTTTTGTCATTTTGTTC TGTTCCTCTCTTTGTGGTTAATTTGTGGAAATCTGTTAGTGAGGGAGAGG AGGCACGCACTTGTATTAATGATATTGCTTTCGAGTTTTGACGGTGTTTG CCAGCGTTTGTTTGGAAGTAACGGCTTGCCAAGCGGCATGTCGGGTTCGT GCGGAGCATGTCCAAAATGGTGTGTCGGGGAGGGAGGAGGGGTTAGACTA GAGAGGGGTAGAGCGAGGAAATCCTGTGGAGTAGGCTCTAGAGGACATAT TGAGAGAGAGTAGCACGTGGTGACCCTTGGGCGTCTTGAATTAAGCGTTT GAGTTGAAACCGCCAAGACGGGAAAAGCCCGCGGAATTTTGATAATTATG GCTTGTGGCATGGATATCTTGTGGAAAGGGGAAGCTGTAGCATGGACAGT CAGAGAACGAATTGGGCTAGTTTTAGGGTCGATCACCCGCGCTACCCATT TGGTGGCTTTTCAGATAAACCATCCAGCCTATTCGCCTCAACCGACCCGT CGGACCTACACATGTGTGTAGCTGTTGAACTTGTGTTGAATCGCGGGAAC GATCACGGAGGACAAAATGTGCGCGATGGGTCGGGCACCGGGAAAGTGGC GCGGGGTGATGAAATCGGTCGGCTGTCAACACATACATGTTTCGGTCCCT GTGGTGTTGGCAAAGTAGTGTGTAGCCTCCCATTATTGTTTTTGCTTATT ATCCCCTGCGATAAATAGTGGACGGAAGAACTTCCACAGACTGTAGTTGT ACTATCGGTGGCCGCCGTGTCGCCGTGCT back to topprotein sequence of EsuBft1000_6a-0001 >EsuBft1000_6 ID=EsuBft1000_6|Name=EsuBft1000_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=250bp
MMSFEAGDFPSDVGDAAGSSAVPAVLADDNPELRETMKREVLSIAATSNR GQVATQEEKDAAMDLIFQLESLNPTPDATNVNTIGGAWELVYTDTQPFRC SPFFMALGEVFGEEKGQAETLFSLHRAATSNGEIGRVRQTISESMLVSEI DLKVGLLPGLPMALKGTVVTKARLNPVSSDSFTVVVESTSVTNNNILSFL DGAVEVPVEQVYSTLRGSVPEAKLSTYYLDDDMRISRMSDDHVFVFVRAP back to topmRNA from alignment at Scaffold_647:14705..21389- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1000_6a-0001 ID=EsuBft1000_6a-0001|Name=EsuBft1000_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6685bp|location=Sequence derived from alignment at Scaffold_647:14705..21389- (Ectocarpus subulatus male Bft15b) CTCCTGTCTCGTAGCTCCTCACCTCTCCGTTCCTTGCGGGTTAGCTTTTC
CCAACAGCAGCAGCAACACGCACCACCGCTGTTGTTGCCCACCCGCTCGA
GGCGACACTTTAGTTATATCGGGAGGCATCGCTGCAACACGTCTTCCACC
AAACCAGCGTGCTGCATTGCCAGGCGGACACCCTTTTTTGACCCGCGCAA
CTTGAAGGCCTCCCTCCTGCTTGCGAAGAACCGCCGCATCAGCAGCATGA
GGCGCAAGGAGCAAGTCCGCGTGGCGTTCCTCTTAGCCTTCGCGGCTTCG
CCAGCAGCTGCATTCGGCTTCTCAGTCTTCAACCCTGCATCTCACAGGGT
TACACCCGCAGCCGTGAGACGTGGCGGTGGTATCTGGGGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCACTAGCCGTTGCGGCTGGCAGCAGCAGCGGCGG
CGCTTGGGGATGATGAGCTTCGAGGCAGGGGACTTCCCGAGCGACGTGGG
GGACGCCGCGGGGTCGTCTGCGGTGCCGGCGGTGCTGGCCGACGACAACC
CCGAGCTCAGAGAGACCATGAAACGCGAGGTTCTGTCCATCGCCGCCACT
TCCAACAGGTGATTTGTTCGAAACATGTGTTGCTAACCACTGCTGTAGAG
GTGAAGCGTGTATCTACAAAAATACACCAGGCGTGTGATGTCAGACCCGG
TGGCAGCTGGTCCGGTATTAACGCACGTGCAAAGTGCAAATGGTGTGTAA
TCAATGCGTGCGAGACGCCCGCGGGAGAGAGCCACCGTTCCTGTCCTGTA
CTGCCGTAGAAGGGGCATAGCCCGTGGTGTCATCGTATGTATCAGTACGG
AGCAATAGATCATGCTCTTGGTGGATTGACTAATGTTGACAGATAAGTCG
TGCATGGGTTACTTGCTCGGTGGTTTTGTTCTTCTTCGATCGAGGACGCG
AGACGTGAGCGCACCTCTCCCCGTCACGGCGGCGGTAGCAGTGAGTGCCA
TGTGCGAGGTCAAAGTACGGCTGTGCCAATCTTCATTCACGTCACGTGAA
GGCTACTTGTTTTCAAGCATACCTTTTTCTGAATTCGGCAGAGCATGTGA
GCAAGGGTCGTCGTTTGCTACGCCCCACCAAGTGCCAATTGTAGCATTGT
GCATGCGCATGACTTTTGGACGAAAGATGAGCCATGAGAAGTAGTGGCAG
CATCTTTCCCGACGTACCGAAGAAGAGTCGCTGGTTTCTGTCAAACAGGG
AGGGAAACATGAAGCCAGGTCGCCATCCCACCCTCGGTATTTTGTGTGGT
GGAGCCCGTAGCGCCTCCAGCCAGAAGACCACGAGAGGTACTGTACAGTA
GCCATTCTACACAGCAGCGGCTTTGTAATTTTTTGTAGTCTCCACTGGTG
TATGGTCGTTCTCGTGCCTGTAACAACCCTCGGCATGTCTCGAGGTTTTG
ACACCGCTGCTCTCTTCCCTTCTTGTTTTCTCTCTCCCTCTCTCTCACGT
GTATGTATTCGTACCCGATATTTCTCCCCTTCCCCAGAGGCCAAGTAGCC
ACGCAGGAAGAAAAGGATGCGGCAATGGACCTGATTTTTCAGCTTGAGTC
CCTGAACCCGACTCCGGATGCCACGAATGTCAACACCATCGGTGAGCTGC
AGGCCTTCTTCCCGTTTCTTTTTGTGTCTCGTGAGAGGAGGGATGAATAG
TTTTTTTCGGACCGCCGTTTCAGGCTCGTTGTACACCTGAGGTTTGCTGT
CTACCGCCCTAACGGCACCTCTTTCTTCATGTCTGCTTCATTCTCTCTCC
CACCTGATGGAAACTCTCGTAGTGTCTCTGCGGTTGAAACTCTAAATAGT
TTTTTCAACACGATTTTCCCGTACTTCGACAGACTGTCTACCATGTTCAC
AGACTGCCCTGCTCACAGGGACTGCGAACATAAACCCCTCTCTATCATAC
CGCCCAGGCCCACGCCCGGAGGAGAAATGCTCGCCCATCACTTTTTCAGA
ACAGAGGTAATAGTCAGCACGATGCCTTTGCCTTGTTGCTGGTCGGTTGC
CTCCGCATCGCAAGAAGCCGAAAACGATAACACACTAGCCTTCAATCCGT
ATTGCAGAAACGAAGGCGGATTGACTCCTGCAGGTATCCCCAGCGTTCAT
ATCTATACAGCAACGCACGTCGCACTCTGTCGCGACTTGGTTATCCTTTC
CGCGTGGACGCCAATGTACTATTTGCGCTCAAACTTTGTTCGGTCTCCCC
CCCCCCTCCCTGACTCTCTTTGCCGGCGACACGGGCGGGGGGGGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAGGAGGGGC
GTGGGAGCTGGTGTACACGGACACGCAACCATTCCGTTGTTCCCCCTTTT
TCATGGCCCTGGGGGAGGTGTTCGGCGAAGAAAAGGGCCAAGCGGAGACT
TTGTTCTCGCTGCACCGAGCCGCAACTTCAAACGGGGAGATCGGCAGGGT
CAGGCAGACCATCAGCGAGTCTATGCTGGTGAGAGCGGAGTACGGCTAGA
CGGACTCCGACATTGCGTTTTGTTGAGAAACACGATGACCCCTGGGCACA
CTATCAGAGGCCCTCTGACTGGTAGCCCAGTGGTCATCGTGCTTCTCAGC
ACCTACAACGGTGATCTGGCAAGAAAGAAAACGTGGGTTTTGTCAGCAAG
AGGGGGTGGAGCGGGCGGAGGAGGATATATAACTGGGGGTGCGTCCTGTC
GTGTGTGATCGTGAGGCGACTAAAAAATTTGACCACGCATCCGTTTTGTT
TCGACATGGAATGCCAACGCACCCCTGCCCCGTGTCGAGGAGTACTTCCT
TATTGTGGGAGCTGCCATACGGCGTTACCATATTATTTTGCGACGTATTT
CCAGTTTTTTTCTCCCCCCTTTTTGAGAGGAAGAGGGGTGCGAGGGAGGG
TGTCCTCTGTCTTTTTCGTCACCAAAGCCCCAGAAGCGTACAAGAAGCGT
CCGAAGGAGTGAGGGAGGGAAGGAGGGAGGGGGGTGGGCGGTCCATTTTT
CTTTCGTTGGTCGACAAAGCGCCCACCCGCTTACGAACTTGAGATTGAAG
AAATTCAGATTCAAGCACAACTTCAACAACTTGGCAAAGAACAGGTACTC
AGTCAAGAAGCCTACATGTTCACGAAAACCATGATAGTCGATGTTGGGTC
ACCCCACAGGGACAAGAAGAAACGAGCCTAGGTCTAAACGTAAGCGGTGT
TCAAGTGTTGGCGCGTTCTGTGTATTGCACACCGTAGGTGCTGGTGAATC
GGGTGTTTCAACCCACTTTCAGGAGCTGCGGTGCAATCAATCATGGCTAT
ACGTGTTTCGAACGTAAACTTCGTTTCATGGCTCTTCCAGGTGTCGGAGA
TTGATCTCAAGGTGGGGCTGCTTCCGGGCTTGCCGATGGCCCTCAAGGGC
ACCGTCGTCACGAAGGCACGGCTTAACCCCGTCAGGTGAGACTTGCCGCC
TCCTTCCTCGCCGCAGCCGGAACCGGACCATATCGCGTGTGCTCTGGGTA
GAAGCGAAGCGAAGCCTCGAGCTTCCGTAGGAGGAGGTGTTGGAGCCATG
CGACGACGCTGAGAGCGGAAGTAGTCCTGTTTTGTTTTTCGTTTCTTCGT
GTCTTGTTTGTGGCTTCAGTGATTTCTTTCTGTTCCACACTCGAACGCCG
AGAAGCAGTCTCCCGGTTCTCATCTCTTACTCGAGAGGAATGTCTTGGTA
ATGTCTTGGCGAGGCTTCCGATTCCCGGTGCGGTAGCACCACCCGTTGAC
GATGCACACGACCTCCTTCGCCTGTTGCCGCGTCGCCGGTCTATCGGGGT
CCGCGAATGCAGTGGTCTATCGTGCACTAGGAAGCTTGCGCGCCCTAGGT
TTTTTTGACCGACGATTCGGAGCTGTTGAGCCCCGAGTACATGCTCAATT
GCACGGCTGGGACCAATCAATGCTATAAGCCCGTGGAAGGTTTGTATACT
GACGTGGTAGCAGATACGGCAGCAAATGTGTTGGTTTCGACGAGTGTGCT
CGCTCTTGTCAAGTTCTCGCCATGCACCTGTTGCAGCGTTGTCTCCCGCG
CAGCGACTTTTTTTGTCGACGCCGTGTGTTGCTTCTGTTGATCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCTCCCCAC
CCTTGTCCGCCTCGTGCAACCCCACTTCAGCTCCGATTCTTTCACTGTCG
TGGTCGAGAGCACGTCTGTGACCAACAACAACATACTGTCGTTCTTGGAC
GGTGCCGTTGAAGTGCCCGTCGAGCAGGTGTACAGGTGGGTGGAGGAGAT
TTTGCCTGGTAATGATCCTCGTACATGGTTATCCTCGCTTGGGTTTGAGT
CTGGCAGACCAGCACGCCCGTGATACCGTGGTCGTCTTCGATTTGTATCA
CGTACGAACTTCCCCGCAGCTGCTTCTACACGCCTCGCCAACCAATGTTG
TACGGGCGGTATCCTGCTTTGGGCTAACTCTCGTAGAATTTAGTGCTATG
ATTTTGGCGGGCTGTCGAGTCTCGAGTTGAAAGAGTATGCGATGCCGTAG
GGAGTTTGACGTTTTGAAGGGCTTGTCGATGTCTGCCGGGTGTTCAAGTG
GCGTAAAGCGGCGTGGAACGTTTGGCCTCCCTTTGCGACCCCTCTGTTGC
CTGATTCGGCCATTTTCTCGTGCGTTTTTCTGCAAAATAGCTCGTAAAAC
ACTCCGGAGTACAAGTATAACGTTGGAAGGGGGCCTCTGTCCCCACAACC
TCTCCTCGTTCCCGCTCCCCACAACCCAGTAGAGGCCCCGTTTAAGTCTG
CTTGGCCCAAGGGCAAACGCCGGCCTTATATCGGGTGCCCGACACCATTC
ATAGTATGGGGTAACTTGAATATCTGTGCCACGCGATTTCACCGGCCTTA
ACCAGGGCAACCGGCCTTAAACGAGCGGTCTTAAACAGGGAAAACTACTC
TGTAACAATATGTTCCGCGCGGGTGTGGGTCACCCGCATTTCTGTAATCT
TTGGTGTTCCAACTTCAGAATTTTCCTCGTCTCGGCCCTGGTTTCTCAAC
CACCTTTGTTCACGTGCCGCACTCCTTGCACAAGCATGTCGGACCTCAAA
CGTGCATACGTCAATACGGTATGTGGCCTGATGAATTGTATATGCCGTGT
TCATCGCAAACCCCCCGTTTGGCGTGACATAAACAGCTCTCCATGTGGGG
TGTGTATGACAGCTAGCTGCCCTCCCGTCATTACTACACCCAAGGCCCAA
GCAGTTGAAGTCATCAGCACCCTGGTGTCCACTTCGTGACCGATGTTTTC
TATTTTTCTCTTTGACTGATTTTGTTGTCGTGTGTCGCGTTAATGTTCCG
CAGCACCCTCAGAGGCAGCGTTCCGGAGGCGAAGCTGTCCACGTACTACC
TCGACGATGACATGCGAATCAGCCGAATGTCCGACGATCATGTTTTCGTG
TTCGTTCGGGCCCCGTAAGCATGTATCGGCAGAGGCTTGTGTACGAATCC
GAAAAAGCGGACGTCTTCATCTCGCCTGATTTTGTTCATTTTTTGTCATT
TTGTTCTGTTCCTCTCTTTGTGGTTAATTTGTGGAAATCTGTTAGTGAGG
GAGAGGAGGCACGCACTTGTATTAATGATATTGCTTTCGAGTTTTGACGG
TGTTTGCCAGCGTTTGTTTGGAAGTAACGGCTTGCCAAGCGGCATGTCGG
GTTCGTGCGGAGCATGTCCAAAATGGTGTGTCGGGGAGGGAGGAGGGGTT
AGACTAGAGAGGGGTAGAGCGAGGAAATCCTGTGGAGTAGGCTCTAGAGG
ACATATTGAGAGAGAGTAGCACGTGGTGACCCTTGGGCGTCTTGAATTAA
GCGTTTGAGTTGAAACCGCCAAGACGGGAAAAGCCCGCGGAATTTTGATA
ATTATGGCTTGTGGCATGGATATCTTGTGGAAAGGGGAAGCTGTAGCATG
GACAGTCAGAGAACGAATTGGGCTAGTTTTAGGGTCGATCACCCGCGCTA
CCCATTTGGTGGCTTTTCAGATAAACCATCCAGCCTATTCGCCTCAACCG
ACCCGTCGGACCTACACATGTGTGTAGCTGTTGAACTTGTGTTGAATCGC
GGGAACGATCACGGAGGACAAAATGTGCGCGATGGGTCGGGCACCGGGAA
AGTGGCGCGGGGTGATGAAATCGGTCGGCTGTCAACACATACATGTTTCG
GTCCCTGTGGTGTTGGCAAAGTAGTGTGTAGCCTCCCATTATTGTTTTTG
CTTATTATCCCCTGCGATAAATAGTGGACGGAAGAACTTCCACAGACTGT
AGTTGTACTATCGGTGGCCGCCGTGTCGCCGTGCT back to topCoding sequence (CDS) from alignment at Scaffold_647:14705..21389- >EsuBft1000_6a-0001 ID=EsuBft1000_6a-0001|Name=EsuBft1000_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=753bp|location=Sequence derived from alignment at Scaffold_647:14705..21389- (Ectocarpus subulatus male Bft15b) ATGATGAGCTTCGAGGCAGGGGACTTCCCGAGCGACGTGGGGGACGCCGC GGGGTCGTCTGCGGTGCCGGCGGTGCTGGCCGACGACAACCCCGAGCTCA GAGAGACCATGAAACGCGAGGTTCTGTCCATCGCCGCCACTTCCAACAGA GGCCAAGTAGCCACGCAGGAAGAAAAGGATGCGGCAATGGACCTGATTTT TCAGCTTGAGTCCCTGAACCCGACTCCGGATGCCACGAATGTCAACACCA TCGGAGGGGCGTGGGAGCTGGTGTACACGGACACGCAACCATTCCGTTGT TCCCCCTTTTTCATGGCCCTGGGGGAGGTGTTCGGCGAAGAAAAGGGCCA AGCGGAGACTTTGTTCTCGCTGCACCGAGCCGCAACTTCAAACGGGGAGA TCGGCAGGGTCAGGCAGACCATCAGCGAGTCTATGCTGGTGTCGGAGATT GATCTCAAGGTGGGGCTGCTTCCGGGCTTGCCGATGGCCCTCAAGGGCAC CGTCGTCACGAAGGCACGGCTTAACCCCGTCAGCTCCGATTCTTTCACTG TCGTGGTCGAGAGCACGTCTGTGACCAACAACAACATACTGTCGTTCTTG GACGGTGCCGTTGAAGTGCCCGTCGAGCAGGTGTACAGCACCCTCAGAGG CAGCGTTCCGGAGGCGAAGCTGTCCACGTACTACCTCGACGATGACATGC GAATCAGCCGAATGTCCGACGATCATGTTTTCGTGTTCGTTCGGGCCCCG TAA back to top
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