Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1000_5 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SignalP-TM |
| Protein domains | TMhelix |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 196 |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-26_001480.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1000_5a-0001 ID=EsuBft1000_5a-0001|Name=EsuBft1000_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1969bp|location=Sequence derived from alignment at Scaffold_647:21482..25356+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CAACTTGCCGTGGACTCTCTCCTGTGTAGTGCACCGTTAGCAGCAGAAAA
GGGCTGCTGTCGAATACGCTTGTCGCATTCAGCCGTGCGTTAGTGAGCGG
AGGCCTTGGCGAGGTGGGGTGTGCATGCTCAGCAAGGGAGAGAGCGCAAA
CGAGCGGAGGGATTGCACTCTCCGGCAAACTGCTGTGTGACCTCTCACAA
CCGACATGGGCTTTGCCAATCGACGAGCCGCGGTGATGGGGCTCTTGGTC
GCGGGGCTAGCCTTCGCTTCGGGTAAGCCCGCCTGGGGGGCGGACGGGGA
GGGCCTTAAGAACGTCAAGAGCGGAGGGCACCACAAGGGGGCGCCGGGGC
ACAAGGGCCTCGACGGTGATCTGCTGGACTTCGACTCGGTTTCCCCAAAA
GATTGCGCGAGCTACCTCTGCGTGTCCAGCGCGGACAAGGCGACCTACTA
CATCGAGGCGGGCTGCCCCGGGCAGTTCGCGGACTACGAGCCCGATAGAG
ATTCGGATGAACCGGTGGATTCCTATTTAGGCTTTAGTTCCTCTGCAGGG
GCCTCTACAGGTGTCAGCACGGGGACCCTGCTCTCCCTCGCGTGCGCGTC
CGGCGTCTTCGCCGTGGGTGTTGGATTCGTTGCTGGCTACAAGGCATCTC
CCTCGTTCGCCTACATGCGAATCCCGTCGTTTGCGTGAAAGTTCGGCTTG
TGAGTCGCCATCAGCGTCAAGTTTAGGGAGATTTAGTGGGGTGACGGAGG
GGGGGAAGGCGGGGTGCTCTTCAGCAGCTGGCAGGGGATCGTGTTGGAGG
CGGCGCCGCCCAAGATAGGGGAGGGAGGTCGGGGAGTAGGCGAAGGAGGA
GATCCGAGGTGCCGCGGAGCGGGCGAAGGGGTGGGGGGGAGGGGGATACT
GCATCAAACTGCATCAGCACACGGCTAAGAAGAGAGGAAACACGGATGTA
CGCGGCGGAACCTCGGTGTGTGACGTGCAGGGCAACACCAGCCTAGTTCC
TGTTGAAAGGAAAACGAGAATGAAACAGAGAACGGCAGTGCTGGAGGGCT
GGGTGCGCAAAGGGCGGGGGTGACCTTGGAGTGACAGGAGCAGCGGTGAC
GAGCGGGAACGAGTGGCGTGCGGATGGGGTCGCTTGAGCACAGTCTGCGG
GGACGGGCGTCGTTGTGGCTGTTCTTGTTTGTATTTGTGTTCGGAGTTAG
GTTGTGATTTGTAATAGATTTCACTACGGGGCACTTGCATCCTTGCATGA
GCCGGGCGTGCGTTATCTCCCTCGATGCCTTCATCGTCAAAGGATGGAGA
GGCAGATTATTTCTCATTTATGTAACGTTCCTTTATCTGTATGCGTATAA
TTATTCTTCTCTTGATGTGCCATGCACGCGGAGAGGGCTTTTGCTGTGTG
GTTCCCGGCAATCGCGCTCGAACCTAGGGTTGGTTGCACGGTTGCTTTTT
TCCTTTTTTATGGTGACCCGGTGTGATCGTGTGATGGTTGTTCATGTTTT
TGTCTTTCGGCACGAGTTAATGAAACATCCTTCGTTTCTGTCGCCTACCT
CCGTTCTAGCATACATGGACCTATCTACTCGTAAGTCGTTGCGTGTTTTT
TTTATCGCGAGTTCCTCATCATGCCTGAGCTGTGTGTGTCATTTGCTTGT
CTCCCCGCTTCTCCTTCGGCCGCGTCGTTTTTGGCTGCGCTCTCCCGTGG
TGTTCTCCCGAATACACCCAAAAGCCTCGCCTTGTGCCTTGGCAAGAAAT
CCCACACCTGACACAGGCATCGCTTTCGAATCAACGCGGACCAAGGGGGG
GGTAGACTATGCTCGTCGTTGTTGCCTGTCTTGCCTGACTGTGTCTTCTT
GAACGCGATGCGTGCCTTTCAAGAGGGAGCAAGATCGTACCGCGGTTTCC
AAATGGGAAATGCGTCTTCCCGAAACTCCGAAGCCTGTCCAGGCAAAGAT
TCACGTGCTGTTTGCGGCT back to topprotein sequence of EsuBft1000_5a-0001 >EsuBft1000_5 ID=EsuBft1000_5|Name=EsuBft1000_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=160bp
MGFANRRAAVMGLLVAGLAFASGKPAWGADGEGLKNVKSGGHHKGAPGHK
GLDGDLLDFDSVSPKDCASYLCVSSADKATYYIEAGCPGQFADYEPDRDS
DEPVDSYLGFSSSAGASTGVSTGTLLSLACASGVFAVGVGFVAGYKASPS
FAYMRIPSFA back to topmRNA from alignment at Scaffold_647:21482..25356+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1000_5a-0001 ID=EsuBft1000_5a-0001|Name=EsuBft1000_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3875bp|location=Sequence derived from alignment at Scaffold_647:21482..25356+ (Ectocarpus subulatus male Bft15b)
CAACTTGCCGTGGACTCTCTCCTGTGTAGTGCACCGTTAGCAGCAGAAAA
GGGCTGCTGTCGAATACGCTTGTCGCATTCAGCCGTGCGTTAGTGAGCGG
AGGCCTTGGCGAGGTGGGGTGTGCATGCTCAGCAAGGGAGAGAGCGCAAA
CGAGCGGAGGGATTGCACTCTCCGGCAAACTGCTGTGTGACCTCTCACAA
CCGACATGGGCTTTGCCAATCGACGAGCCGCGGTGATGGGGCTCTTGGTC
GCGGGGCTAGCCTTCGCTTCGGGTAAGCCCGCCTGGGGGGCGGACGGGGA
GGGCCTTAAGAACGTCAAGAGCGGAGGGCACCACAAGGGGGCGCCGGGGC
ACAAGGGCCTCGACGGTGATCTGCTGGACTTCGACTCGGTTTCCCCAAAA
GATTGCGCGAGCTACCTCTGCGTGTCCAGCGCGGACAAGGCGACCTACTA
CATCGAGGCGGGCTGCCCCGGGCAGTTCGCGGACTACGAGCCCGATAGAG
ATTCGGATGAACCGGTGGATTCCTATTTAGGCTTTAGTTCCTCTGCAGGG
TGAGGAAGTGTTGCAAAGCGTGGTGATTTGCTTGTCATCATTTGGTTTTT
GTCTGTCTTGGTGCACGCTTTCTTTTCGCCCAAAATGAACCCTCCGCCCC
CCCGGTGTTTCTCGACGATAAACCCAGCCCGAAGCAATGGGGGAATGGGC
ACGTTTGTGCGATCATATACAGGCTTTCATATGTACAGGCTGTGTCCATT
TCATTGTTGGAGTGTCATATCTGTGTATTTTTTCGAACGGAAGGAAATGA
AGGAGGTGTTGCACGGCACAATATTTGGGCTTGAGTTCCTCTGCAGGGTG
AGGGAGTGTTCCAAAGCGCGGTGATTTGCGTGTCATCATTTGGTTTTTGT
CTATGTCTTGGTGCACGCTTTCTTGTCGCCCAAAATGAACCCTCCGCCCC
CCCGGTGTTTCTCGACGATGAACCCAGCCCGAAGCGATGGGGGAATGGGC
ACGTTTGTGCGATCATATACAGGCTTTCATATGTACAGGCTGTGTCCATC
TCATTGCCGGAGTGTCATGTCTGTGTATTCTTTCGAACGGAAGGAATAAA
GGAGGTGTTGTACGGCACAAAACGGTCCCACCAGCCTGCAAAGGTCAGCG
GCTCATCAGGCACACACTCATTCGAACAGGTCGCGTTGTCCCTCTCTAAT
CATACGGACTGTAGTACATTTTATCTTACAAGTGCAACGAAAGCATCAGT
CTTTCCTCGAGCCACTCTCTCTCTGGTTGCCGTTACTCCGTCTAGCAACA
CCCACAAATTCTGTCTCGAAAATTGCTCTGTGGGTACACGTACAGCAGTA
GTGCAAGAGTTGCATCCCCAAAACCTGCGGCGCAAGGCGGACGGACGTAT
GCATAGGTTTATAGGATAGTGTGGATGGAGTCAAGCGAACGGTAATCGGC
CCCGGCCACCTTGTGTGGTGCTGAACTGCTACATAGGAAGACTTGGGCAT
CGTTGAAGCCTTGAAACGACCGTGTTGTTGAATTCCACGTATGCCACATG
GGCATGGTTTCATGGGCGCTGTAGCGAGACCGAGTATCGACACGGCTGCT
GTTCTGTCACGCATGTGCTGGCATGTGGTTCTGCTGTTGACAGTTGACGT
ATGCATACGACTCGTTGGTTCCCCTGTTCGAGATCGTATGAAGAAACACA
ACTTGCCGCGCTCAGTATTCTGGGTGCGTTGTGTGCCAGCAGTTTCAACC
CGCATTGCGGCACCGAATGGTGGGGGATGGCGTTTCTTCCTACTGCTGTA
TTCCTACTTCTGCATCACTATTATAGTTGTCCACAATCCCATGGCCACAA
GGCGGGGTCTCAAATATGTACCGCTGGAATGGCTACATATTTTCTGTTGT
GGTCTCTCTGTGCCCACACTTGTTGTGAAGCAAAACGCTGCATATACTCG
TACGAGTGCTGAAGAACTACTGCTAGCCTTGAAGTACCGTGTGCCACGTT
GTTGCTGACCTTTTCCTTTCGGCTCAACCAAGGCTCGCGCCGACATCACC
GGCTACAAAGCCACGGGGAAGTCGCGGTCGCGAGGAAATCATGCTGACAG
CGCTGTTTTCTCTTTTGGCTCCACGAAGATGGCGACGCTATCTATGCATC
CTCGGTGCTGAGAGTTTTCATCCATGCACAGACACAGCAAACAACACAGC
TATTCACCCGCAGCGGCGGCGCATTAAATCGCGATATATCGCCACCACGT
GTGCACCCCAAAAACTATCTACCGGGGATCCTTTTTCTCAGTGACAGTAG
CAAGGTTGTGCCCGTTCCGGCAGCCACTGAAACACGCTAGCGAACCTTCT
CCCTCCGTGCTTTTCTTCGCTCAAATATACATGCTCACACCGCGCTCGGG
CGTTGCTGTGTCTGTCTGTCTGTCTGTCTGTCTGGCTATTTCGTGTTACA
CACAGGGCCTCTACAGGTGTCAGCACGGGGACCCTGCTCTCCCTCGCGTG
CGCGTCCGGCGTCTTCGCCGTGGGTGTTGGATTCGTTGCTGGCTACAAGG
CATCTCCCTCGTTCGCCTACATGCGAATCCCGTCGTTTGCGTGAAAGTTC
GGCTTGTGAGTCGCCATCAGCGTCAAGTTTAGGGAGATTTAGTGGGGTGA
CGGAGGGGGGGAAGGCGGGGTGCTCTTCAGCAGCTGGCAGGGGATCGTGT
TGGAGGCGGCGCCGCCCAAGATAGGGGAGGGAGGTCGGGGAGTAGGCGAA
GGAGGAGATCCGAGGTGCCGCGGAGCGGGCGAAGGGGTGGGGGGGAGGGG
GATACTGCATCAAACTGCATCAGCACACGGCTAAGAAGAGAGGAAACACG
GATGTACGCGGCGGAACCTCGGTGTGTGACGTGCAGGGCAACACCAGCCT
AGTTCCTGTTGAAAGGAAAACGAGAATGAAACAGAGAACGGCAGTGCTGG
AGGGCTGGGTGCGCAAAGGGCGGGGGTGACCTTGGAGTGACAGGAGCAGC
GGTGACGAGCGGGAACGAGTGGCGTGCGGATGGGGTCGCTTGAGCACAGT
CTGCGGGGACGGGCGTCGTTGTGGCTGTTCTTGTTTGTATTTGTGTTCGG
AGTTAGGTTGTGATTTGTAATAGATTTCACTACGGGGCACTTGCATCCTT
GCATGAGCCGGGCGTGCGTTATCTCCCTCGATGCCTTCATCGTCAAAGGA
TGGAGAGGCAGATTATTTCTCATTTATGTAACGTTCCTTTATCTGTATGC
GTATAATTATTCTTCTCTTGATGTGCCATGCACGCGGAGAGGGCTTTTGC
TGTGTGGTTCCCGGCAATCGCGCTCGAACCTAGGGTTGGTTGCACGGTTG
CTTTTTTCCTTTTTTATGGTGACCCGGTGTGATCGTGTGATGGTTGTTCA
TGTTTTTGTCTTTCGGCACGAGTTAATGAAACATCCTTCGTTTCTGTCGC
CTACCTCCGTTCTAGCATACATGGACCTATCTACTCGTAAGTCGTTGCGT
GTTTTTTTTATCGCGAGTTCCTCATCATGCCTGAGCTGTGTGTGTCATTT
GCTTGTCTCCCCGCTTCTCCTTCGGCCGCGTCGTTTTTGGCTGCGCTCTC
CCGTGGTGTTCTCCCGAATACACCCAAAAGCCTCGCCTTGTGCCTTGGCA
AGAAATCCCACACCTGACACAGGCATCGCTTTCGAATCAACGCGGACCAA
GGGGGGGGTAGACTATGCTCGTCGTTGTTGCCTGTCTTGCCTGACTGTGT
CTTCTTGAACGCGATGCGTGCCTTTCAAGAGGGAGCAAGATCGTACCGCG
GTTTCCAAATGGGAAATGCGTCTTCCCGAAACTCCGAAGCCTGTCCAGGC
AAAGATTCACGTGCTGTTTGCGGCT back to topCoding sequence (CDS) from alignment at Scaffold_647:21482..25356+ >EsuBft1000_5a-0001 ID=EsuBft1000_5a-0001|Name=EsuBft1000_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=483bp|location=Sequence derived from alignment at Scaffold_647:21482..25356+ (Ectocarpus subulatus male Bft15b)
ATGGGCTTTGCCAATCGACGAGCCGCGGTGATGGGGCTCTTGGTCGCGGG
GCTAGCCTTCGCTTCGGGTAAGCCCGCCTGGGGGGCGGACGGGGAGGGCC
TTAAGAACGTCAAGAGCGGAGGGCACCACAAGGGGGCGCCGGGGCACAAG
GGCCTCGACGGTGATCTGCTGGACTTCGACTCGGTTTCCCCAAAAGATTG
CGCGAGCTACCTCTGCGTGTCCAGCGCGGACAAGGCGACCTACTACATCG
AGGCGGGCTGCCCCGGGCAGTTCGCGGACTACGAGCCCGATAGAGATTCG
GATGAACCGGTGGATTCCTATTTAGGCTTTAGTTCCTCTGCAGGGGCCTC
TACAGGTGTCAGCACGGGGACCCTGCTCTCCCTCGCGTGCGCGTCCGGCG
TCTTCGCCGTGGGTGTTGGATTCGTTGCTGGCTACAAGGCATCTCCCTCG
TTCGCCTACATGCGAATCCCGTCGTTTGCGTGA back to top
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