EsuBft1000_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1000_5a-0001
Unique Name	EsuBft1000_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_647	contig	Scaffold_647:21482..25356 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1000_5
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SignalP-TM
Protein domains	TMhelix
Protein domains	TRANSMEMBRANE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	196
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-26_001480.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1000_5a	EsuBft1000_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_647 21482..25356 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1000_5a-0001-exon	EsuBft1000_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 21482..22030 +
EsuBft1000_5a-0001-exon	agat-exon-24157	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 23937..25356 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1000_5a-0001-exon	agat-five_prime_utr-2	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_647 21482..21686 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1000_5a-0001-cds	EsuBft1000_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_647 21687..22030 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1000_5a-0001-exon	agat-three_prime_utr-4	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_647 24076..25356 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1000_5a-0001	EsuBft1000_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_647 21687..24075 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_647:21482..25356+
coding sequence from alignment at Scaffold_647:21482..25356+

spliced messenger RNA

>EsuBft1000_5a-0001 ID=EsuBft1000_5a-0001|Name=EsuBft1000_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1969bp|location=Sequence derived from alignment at Scaffold_647:21482..25356+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAACTTGCCGTGGACTCTCTCCTGTGTAGTGCACCGTTAGCAGCAGAAAA
GGGCTGCTGTCGAATACGCTTGTCGCATTCAGCCGTGCGTTAGTGAGCGG
AGGCCTTGGCGAGGTGGGGTGTGCATGCTCAGCAAGGGAGAGAGCGCAAA
CGAGCGGAGGGATTGCACTCTCCGGCAAACTGCTGTGTGACCTCTCACAA
CCGACATGGGCTTTGCCAATCGACGAGCCGCGGTGATGGGGCTCTTGGTC
GCGGGGCTAGCCTTCGCTTCGGGTAAGCCCGCCTGGGGGGCGGACGGGGA
GGGCCTTAAGAACGTCAAGAGCGGAGGGCACCACAAGGGGGCGCCGGGGC
ACAAGGGCCTCGACGGTGATCTGCTGGACTTCGACTCGGTTTCCCCAAAA
GATTGCGCGAGCTACCTCTGCGTGTCCAGCGCGGACAAGGCGACCTACTA
CATCGAGGCGGGCTGCCCCGGGCAGTTCGCGGACTACGAGCCCGATAGAG
ATTCGGATGAACCGGTGGATTCCTATTTAGGCTTTAGTTCCTCTGCAGGG
GCCTCTACAGGTGTCAGCACGGGGACCCTGCTCTCCCTCGCGTGCGCGTC
CGGCGTCTTCGCCGTGGGTGTTGGATTCGTTGCTGGCTACAAGGCATCTC
CCTCGTTCGCCTACATGCGAATCCCGTCGTTTGCGTGAAAGTTCGGCTTG
TGAGTCGCCATCAGCGTCAAGTTTAGGGAGATTTAGTGGGGTGACGGAGG
GGGGGAAGGCGGGGTGCTCTTCAGCAGCTGGCAGGGGATCGTGTTGGAGG
CGGCGCCGCCCAAGATAGGGGAGGGAGGTCGGGGAGTAGGCGAAGGAGGA
GATCCGAGGTGCCGCGGAGCGGGCGAAGGGGTGGGGGGGAGGGGGATACT
GCATCAAACTGCATCAGCACACGGCTAAGAAGAGAGGAAACACGGATGTA
CGCGGCGGAACCTCGGTGTGTGACGTGCAGGGCAACACCAGCCTAGTTCC
TGTTGAAAGGAAAACGAGAATGAAACAGAGAACGGCAGTGCTGGAGGGCT
GGGTGCGCAAAGGGCGGGGGTGACCTTGGAGTGACAGGAGCAGCGGTGAC
GAGCGGGAACGAGTGGCGTGCGGATGGGGTCGCTTGAGCACAGTCTGCGG
GGACGGGCGTCGTTGTGGCTGTTCTTGTTTGTATTTGTGTTCGGAGTTAG
GTTGTGATTTGTAATAGATTTCACTACGGGGCACTTGCATCCTTGCATGA
GCCGGGCGTGCGTTATCTCCCTCGATGCCTTCATCGTCAAAGGATGGAGA
GGCAGATTATTTCTCATTTATGTAACGTTCCTTTATCTGTATGCGTATAA
TTATTCTTCTCTTGATGTGCCATGCACGCGGAGAGGGCTTTTGCTGTGTG
GTTCCCGGCAATCGCGCTCGAACCTAGGGTTGGTTGCACGGTTGCTTTTT
TCCTTTTTTATGGTGACCCGGTGTGATCGTGTGATGGTTGTTCATGTTTT
TGTCTTTCGGCACGAGTTAATGAAACATCCTTCGTTTCTGTCGCCTACCT
CCGTTCTAGCATACATGGACCTATCTACTCGTAAGTCGTTGCGTGTTTTT
TTTATCGCGAGTTCCTCATCATGCCTGAGCTGTGTGTGTCATTTGCTTGT
CTCCCCGCTTCTCCTTCGGCCGCGTCGTTTTTGGCTGCGCTCTCCCGTGG
TGTTCTCCCGAATACACCCAAAAGCCTCGCCTTGTGCCTTGGCAAGAAAT
CCCACACCTGACACAGGCATCGCTTTCGAATCAACGCGGACCAAGGGGGG
GGTAGACTATGCTCGTCGTTGTTGCCTGTCTTGCCTGACTGTGTCTTCTT
GAACGCGATGCGTGCCTTTCAAGAGGGAGCAAGATCGTACCGCGGTTTCC
AAATGGGAAATGCGTCTTCCCGAAACTCCGAAGCCTGTCCAGGCAAAGAT
TCACGTGCTGTTTGCGGCT

protein sequence of EsuBft1000_5a-0001

>EsuBft1000_5 ID=EsuBft1000_5|Name=EsuBft1000_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=160bp
MGFANRRAAVMGLLVAGLAFASGKPAWGADGEGLKNVKSGGHHKGAPGHK
GLDGDLLDFDSVSPKDCASYLCVSSADKATYYIEAGCPGQFADYEPDRDS
DEPVDSYLGFSSSAGASTGVSTGTLLSLACASGVFAVGVGFVAGYKASPS
FAYMRIPSFA

mRNA from alignment at Scaffold_647:21482..25356+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1000_5a-0001 ID=EsuBft1000_5a-0001|Name=EsuBft1000_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3875bp|location=Sequence derived from alignment at Scaffold_647:21482..25356+ (Ectocarpus subulatus male Bft15b)
CAACTTGCCGTGGACTCTCTCCTGTGTAGTGCACCGTTAGCAGCAGAAAA
GGGCTGCTGTCGAATACGCTTGTCGCATTCAGCCGTGCGTTAGTGAGCGG
AGGCCTTGGCGAGGTGGGGTGTGCATGCTCAGCAAGGGAGAGAGCGCAAA
CGAGCGGAGGGATTGCACTCTCCGGCAAACTGCTGTGTGACCTCTCACAA
CCGACATGGGCTTTGCCAATCGACGAGCCGCGGTGATGGGGCTCTTGGTC
GCGGGGCTAGCCTTCGCTTCGGGTAAGCCCGCCTGGGGGGCGGACGGGGA
GGGCCTTAAGAACGTCAAGAGCGGAGGGCACCACAAGGGGGCGCCGGGGC
ACAAGGGCCTCGACGGTGATCTGCTGGACTTCGACTCGGTTTCCCCAAAA
GATTGCGCGAGCTACCTCTGCGTGTCCAGCGCGGACAAGGCGACCTACTA
CATCGAGGCGGGCTGCCCCGGGCAGTTCGCGGACTACGAGCCCGATAGAG
ATTCGGATGAACCGGTGGATTCCTATTTAGGCTTTAGTTCCTCTGCAGGG
TGAGGAAGTGTTGCAAAGCGTGGTGATTTGCTTGTCATCATTTGGTTTTT
GTCTGTCTTGGTGCACGCTTTCTTTTCGCCCAAAATGAACCCTCCGCCCC
CCCGGTGTTTCTCGACGATAAACCCAGCCCGAAGCAATGGGGGAATGGGC
ACGTTTGTGCGATCATATACAGGCTTTCATATGTACAGGCTGTGTCCATT
TCATTGTTGGAGTGTCATATCTGTGTATTTTTTCGAACGGAAGGAAATGA
AGGAGGTGTTGCACGGCACAATATTTGGGCTTGAGTTCCTCTGCAGGGTG
AGGGAGTGTTCCAAAGCGCGGTGATTTGCGTGTCATCATTTGGTTTTTGT
CTATGTCTTGGTGCACGCTTTCTTGTCGCCCAAAATGAACCCTCCGCCCC
CCCGGTGTTTCTCGACGATGAACCCAGCCCGAAGCGATGGGGGAATGGGC
ACGTTTGTGCGATCATATACAGGCTTTCATATGTACAGGCTGTGTCCATC
TCATTGCCGGAGTGTCATGTCTGTGTATTCTTTCGAACGGAAGGAATAAA
GGAGGTGTTGTACGGCACAAAACGGTCCCACCAGCCTGCAAAGGTCAGCG
GCTCATCAGGCACACACTCATTCGAACAGGTCGCGTTGTCCCTCTCTAAT
CATACGGACTGTAGTACATTTTATCTTACAAGTGCAACGAAAGCATCAGT
CTTTCCTCGAGCCACTCTCTCTCTGGTTGCCGTTACTCCGTCTAGCAACA
CCCACAAATTCTGTCTCGAAAATTGCTCTGTGGGTACACGTACAGCAGTA
GTGCAAGAGTTGCATCCCCAAAACCTGCGGCGCAAGGCGGACGGACGTAT
GCATAGGTTTATAGGATAGTGTGGATGGAGTCAAGCGAACGGTAATCGGC
CCCGGCCACCTTGTGTGGTGCTGAACTGCTACATAGGAAGACTTGGGCAT
CGTTGAAGCCTTGAAACGACCGTGTTGTTGAATTCCACGTATGCCACATG
GGCATGGTTTCATGGGCGCTGTAGCGAGACCGAGTATCGACACGGCTGCT
GTTCTGTCACGCATGTGCTGGCATGTGGTTCTGCTGTTGACAGTTGACGT
ATGCATACGACTCGTTGGTTCCCCTGTTCGAGATCGTATGAAGAAACACA
ACTTGCCGCGCTCAGTATTCTGGGTGCGTTGTGTGCCAGCAGTTTCAACC
CGCATTGCGGCACCGAATGGTGGGGGATGGCGTTTCTTCCTACTGCTGTA
TTCCTACTTCTGCATCACTATTATAGTTGTCCACAATCCCATGGCCACAA
GGCGGGGTCTCAAATATGTACCGCTGGAATGGCTACATATTTTCTGTTGT
GGTCTCTCTGTGCCCACACTTGTTGTGAAGCAAAACGCTGCATATACTCG
TACGAGTGCTGAAGAACTACTGCTAGCCTTGAAGTACCGTGTGCCACGTT
GTTGCTGACCTTTTCCTTTCGGCTCAACCAAGGCTCGCGCCGACATCACC
GGCTACAAAGCCACGGGGAAGTCGCGGTCGCGAGGAAATCATGCTGACAG
CGCTGTTTTCTCTTTTGGCTCCACGAAGATGGCGACGCTATCTATGCATC
CTCGGTGCTGAGAGTTTTCATCCATGCACAGACACAGCAAACAACACAGC
TATTCACCCGCAGCGGCGGCGCATTAAATCGCGATATATCGCCACCACGT
GTGCACCCCAAAAACTATCTACCGGGGATCCTTTTTCTCAGTGACAGTAG
CAAGGTTGTGCCCGTTCCGGCAGCCACTGAAACACGCTAGCGAACCTTCT
CCCTCCGTGCTTTTCTTCGCTCAAATATACATGCTCACACCGCGCTCGGG
CGTTGCTGTGTCTGTCTGTCTGTCTGTCTGTCTGGCTATTTCGTGTTACA
CACAGGGCCTCTACAGGTGTCAGCACGGGGACCCTGCTCTCCCTCGCGTG
CGCGTCCGGCGTCTTCGCCGTGGGTGTTGGATTCGTTGCTGGCTACAAGG
CATCTCCCTCGTTCGCCTACATGCGAATCCCGTCGTTTGCGTGAAAGTTC
GGCTTGTGAGTCGCCATCAGCGTCAAGTTTAGGGAGATTTAGTGGGGTGA
CGGAGGGGGGGAAGGCGGGGTGCTCTTCAGCAGCTGGCAGGGGATCGTGT
TGGAGGCGGCGCCGCCCAAGATAGGGGAGGGAGGTCGGGGAGTAGGCGAA
GGAGGAGATCCGAGGTGCCGCGGAGCGGGCGAAGGGGTGGGGGGGAGGGG
GATACTGCATCAAACTGCATCAGCACACGGCTAAGAAGAGAGGAAACACG
GATGTACGCGGCGGAACCTCGGTGTGTGACGTGCAGGGCAACACCAGCCT
AGTTCCTGTTGAAAGGAAAACGAGAATGAAACAGAGAACGGCAGTGCTGG
AGGGCTGGGTGCGCAAAGGGCGGGGGTGACCTTGGAGTGACAGGAGCAGC
GGTGACGAGCGGGAACGAGTGGCGTGCGGATGGGGTCGCTTGAGCACAGT
CTGCGGGGACGGGCGTCGTTGTGGCTGTTCTTGTTTGTATTTGTGTTCGG
AGTTAGGTTGTGATTTGTAATAGATTTCACTACGGGGCACTTGCATCCTT
GCATGAGCCGGGCGTGCGTTATCTCCCTCGATGCCTTCATCGTCAAAGGA
TGGAGAGGCAGATTATTTCTCATTTATGTAACGTTCCTTTATCTGTATGC
GTATAATTATTCTTCTCTTGATGTGCCATGCACGCGGAGAGGGCTTTTGC
TGTGTGGTTCCCGGCAATCGCGCTCGAACCTAGGGTTGGTTGCACGGTTG
CTTTTTTCCTTTTTTATGGTGACCCGGTGTGATCGTGTGATGGTTGTTCA
TGTTTTTGTCTTTCGGCACGAGTTAATGAAACATCCTTCGTTTCTGTCGC
CTACCTCCGTTCTAGCATACATGGACCTATCTACTCGTAAGTCGTTGCGT
GTTTTTTTTATCGCGAGTTCCTCATCATGCCTGAGCTGTGTGTGTCATTT
GCTTGTCTCCCCGCTTCTCCTTCGGCCGCGTCGTTTTTGGCTGCGCTCTC
CCGTGGTGTTCTCCCGAATACACCCAAAAGCCTCGCCTTGTGCCTTGGCA
AGAAATCCCACACCTGACACAGGCATCGCTTTCGAATCAACGCGGACCAA
GGGGGGGGTAGACTATGCTCGTCGTTGTTGCCTGTCTTGCCTGACTGTGT
CTTCTTGAACGCGATGCGTGCCTTTCAAGAGGGAGCAAGATCGTACCGCG
GTTTCCAAATGGGAAATGCGTCTTCCCGAAACTCCGAAGCCTGTCCAGGC
AAAGATTCACGTGCTGTTTGCGGCT

Coding sequence (CDS) from alignment at Scaffold_647:21482..25356+

>EsuBft1000_5a-0001 ID=EsuBft1000_5a-0001|Name=EsuBft1000_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=483bp|location=Sequence derived from alignment at Scaffold_647:21482..25356+ (Ectocarpus subulatus male Bft15b)
ATGGGCTTTGCCAATCGACGAGCCGCGGTGATGGGGCTCTTGGTCGCGGG
GCTAGCCTTCGCTTCGGGTAAGCCCGCCTGGGGGGCGGACGGGGAGGGCC
TTAAGAACGTCAAGAGCGGAGGGCACCACAAGGGGGCGCCGGGGCACAAG
GGCCTCGACGGTGATCTGCTGGACTTCGACTCGGTTTCCCCAAAAGATTG
CGCGAGCTACCTCTGCGTGTCCAGCGCGGACAAGGCGACCTACTACATCG
AGGCGGGCTGCCCCGGGCAGTTCGCGGACTACGAGCCCGATAGAGATTCG
GATGAACCGGTGGATTCCTATTTAGGCTTTAGTTCCTCTGCAGGGGCCTC
TACAGGTGTCAGCACGGGGACCCTGCTCTCCCTCGCGTGCGCGTCCGGCG
TCTTCGCCGTGGGTGTTGGATTCGTTGCTGGCTACAAGGCATCTCCCTCG
TTCGCCTACATGCGAATCCCGTCGTTTGCGTGA