mRNA_Ecto-sp9_F_contig1048.453.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1048.453.1
Unique NamemRNA_Ecto-sp9_F_contig1048.453.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1048.453.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ85_ECTSI)

HSP 1 Score: 1639 bits (4245), Expect = 0.000e+0
Identity = 908/953 (95.28%), Postives = 919/953 (96.43%), Query Frame = 1 
Query:  154 CAAILFASAEPVPAAVAFATAAVEDSPWNNWDVQSMAGIVHITNEMIKLSRETSDDEGPQADVNGRKHWNTIPQDTPIDQERGSMARECVEISSGTKDTAPAMDTVQNNSTQRRESKTRSESDSGGALEGQRQREEGTQKHVEEKTPSPREGVTSHSSPRANDALRDASDMVRQEPSPLSSPEGLVAPPMWEEDKGVELGETIDVDGAHGARGSGSNYGGGGDTSCPRTPGDVRADASGAGDDDPAPQLLHAGEAAPLATSKRPEAARCQQPEDRIHSTSGMKTSSAPTATTDNVEAAGTNVTSNEQDILTARSGNYSLERGDETGASEHQKTRDQAKRLALEVARLRSSLRATTSELNTERSTRVRLEDEWWRRMQEWEEKRGRLVASKQEAERTARTAEEDVARLLVKEKDREGEVVSERLARETRQEKGDIAMNGVVKVQDRLIQALRTELEMTDRAKRAAQDNALEAKEQLRLYVDDFLLWRNRVKHLEALLIDLGHPPQPGLHTETALSCGSPSSKEHKRPEAPHRQNVDDKEQEADPRAPVAGEPVEYGGSMQAGDDAKGLSIPEKYARYFETTTGGYPAPPSNAAFPGTQRTEGSELDSETAAXXXXXXXXXXXXXXXXXXXXXRAYFQRSMKAQQEISIRLGKDLARARADLQSIYESNKAKARRSGGETSTCRGSLLHETDGKSEAASSERAQGIGTGRNGGDSPSDERRVQDRTAVQGISAPAASFPEGSHMARVLAVLLGEGSTANGTAVAGLSDAPTPSLRLTDYPQMLQAVFGGGPAAPLPDSAVTHRRRVMVSEAPQRGQTGQG-YGDDDEGRFPTQPPSHSRTLTEEKQQARTTQSHARVDRRHGPGATGRNCTEVQVHNRTCGGNGGRGDAGCRPQDKAAVEGASGIPDDVDPGGGRESRSLARAFRGYEAKSSLLQRWLGEKKSPSPSPSRAMPVT 3009
            CAAILFASAEPVPAAVAFATAAVEDSPWNNWDVQSMAGIVHITNEM KLSRETSDDEGPQADVNGRKH NTIPQD PIDQERGSM RECVEISSGTKDTAPAMD VQNNS QRRESKTRSES+SGGALEGQRQREE TQKHVEEKTPSPREGVTSHSSPRANDALRDASDMVRQEPSPLSSPEGLVAPPMWEEDKGVELGETIDVDGAHGARGSGSNYGGGGDTSCPRTPGDVRADASGAGDDDPAPQLLHAGEAAPLATSKRPE A CQQPEDRIHSTSGMKTSSAP ATTDNV+AAGTNVTSNEQDILTARSGNYSLERGDET ASEHQKTRDQAKRLALEVARLRSSLR TTSELNTERSTRVRLEDEWWRRMQEWEE+RGRLVASKQEAERTARTAEEDVARLLVKEKDREGEV SERLARETRQEK DIAMNGVVKVQDRLIQALRTELEMTDRA++AAQDNALEAK+QLRLYVDDFLLWRNR KHLE LLIDLGHPPQPGL+TET LSCGSPSSKEHK PEAPHRQNVDDKEQEAD R PVAGEPVEYGGS QAGD AKGLSIPEKYARYFETTTGG+PAPPSN AFPGTQRTE SELDSETA XXXXXXXXXXXXXXXXXXXXXRAYF RSMKAQQEISIRLGKDLARARADLQSIYESNKAKARR GGETSTC GSLLHETDGKSEAASSERAQGIGTGRNGG+SPSDERRVQDRTAVQG+SAPAASFPEGSHMARVLAVLLGE STANGTAVAGLSDAPTPSLRLTDYPQMLQAVFGGGPAAPLPDSAVTHRRRV+VSEAPQRGQTGQG YGDDDEGRFPTQ PS SRTLTEEKQQARTTQSHARVDRRHGPGATGRNCTEVQVHNRTCGGNGGRGDAGCRPQDKAAVEGASGIPDDVDPGGG ESRSL RAFRGYEAKSSLLQRWLGEKKSPSPSPSRAMPVT
Sbjct:   15 CAAILFASAEPVPAAVAFATAAVEDSPWNNWDVQSMAGIVHITNEMSKLSRETSDDEGPQADVNGRKHRNTIPQDAPIDQERGSMTRECVEISSGTKDTAPAMDKVQNNSRQRRESKTRSESNSGGALEGQRQREEDTQKHVEEKTPSPREGVTSHSSPRANDALRDASDMVRQEPSPLSSPEGLVAPPMWEEDKGVELGETIDVDGAHGARGSGSNYGGGGDTSCPRTPGDVRADASGAGDDDPAPQLLHAGEAAPLATSKRPEVATCQQPEDRIHSTSGMKTSSAPAATTDNVKAAGTNVTSNEQDILTARSGNYSLERGDETWASEHQKTRDQAKRLALEVARLRSSLRTTTSELNTERSTRVRLEDEWWRRMQEWEEERGRLVASKQEAERTARTAEEDVARLLVKEKDREGEVASERLARETRQEKADIAMNGVVKVQDRLIQALRTELEMTDRARQAAQDNALEAKDQLRLYVDDFLLWRNRAKHLEGLLIDLGHPPQPGLNTETPLSCGSPSSKEHKLPEAPHRQNVDDKEQEADSRTPVAGEPVEYGGSRQAGDGAKGLSIPEKYARYFETTTGGHPAPPSNPAFPGTQRTEASELDSETAXXXXXXXXXXXXXXXXXXXXXXRAYFHRSMKAQQEISIRLGKDLARARADLQSIYESNKAKARRGGGETSTCHGSLLHETDGKSEAASSERAQGIGTGRNGGESPSDERRVQDRTAVQGVSAPAASFPEGSHMARVLAVLLGEDSTANGTAVAGLSDAPTPSLRLTDYPQMLQAVFGGGPAAPLPDSAVTHRRRVVVSEAPQRGQTGQGLYGDDDEGRFPTQHPSRSRTLTEEKQQARTTQSHARVDRRHGPGATGRNCTEVQVHNRTCGGNGGRGDAGCRPQDKAAVEGASGIPDDVDPGGG-ESRSLDRAFRGYEAKSSLLQRWLGEKKSPSPSPSRAMPVT 966
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1048.453.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY5_9PHAE)

HSP 1 Score: 1467 bits (3798), Expect = 0.000e+0
Identity = 817/960 (85.10%), Postives = 844/960 (87.92%), Query Frame = 1 
Query:  154 CAAILFASAEPVPAAVAFATAAVEDSPWNNWDVQSMAGIVHITNEMIKLSRETSDDEGPQADVNGRKHWNTIPQDTPIDQERGSMARECVEISSGTKDTAPAMDTVQNNSTQRRESKTRSESDSGGALEGQRQREEGTQKHVEEKTPSPREGVTSHSSPRANDALRDASDMVRQEPSPLSSPEGLVAPPMWEEDKGVELGETIDVDGAHGARGSGSNYGGGGDTSCPRTPGDVRADASGAGDDDPAPQLLHAGEAAPLATSKRPEAARCQQPEDRIHSTSGMKTSSAPTATTDNVEAAGTNVTSNEQDILTARSGNYSLERGDETGASEHQKTRDQAKRLALEVARLRSSLRATTSELNTERSTRVRLEDEWWRRMQEWEEKRGRLVASKQEAERTARTAEEDVARLLVKEKDREGEVVSERLARETRQEKGDIAMNGVVKVQDRLIQALRTELEMTDRAKRAAQDNALEAKEQLRLYVDDFLLWRNRVKHLEALLIDLGHPPQPGLHTETALSCGSPSSKEHKRPEAPHRQNVDDKEQEADPRAPVAGEPVEYGGSMQAGDDAKGLSIPEKYARYFETTTGGYPAPPSNAAFPGTQRTEGSELDSETAAXXXXXXXXXXXXXXXXXXXXXRAYFQRSMKAQQEISIRLGKDLARARADLQSIYESNKAKARRSGGETSTCRGSLLHETDGKSEAASSERAQGIGTGRNGGDSPS--DERRVQDRTAVQGI------SAPAASFPEGSHMARVLAVLLGEGSTANGTAVAGLSDAPTPSLRLTDYPQMLQAVFGGGPAAPLPDSAVTHRRRVMVSEAPQRGQTGQGYGDDDEGRFPTQPPSHSRTLTEEKQQARTTQSHARVDRRHGPGATGRNCTEVQVHNRTCGGNGGRGDAGCRPQDKAAVEGASGIPDDVDPGGGRESRSLARAFRGYEAKSSLLQRWLGEKKSPSPSPSRAMPVT 3009
            CA ILFASAEPVPAAVAFATAAVEDSPWNNWDVQSM GIVHITNE  KLSRETSDDEGP+ADVNGRKH NTIPQDTPIDQE+GSMARECVEI SG+KDTAPAMD VQN S QR ESKTRSESD GGALEGQRQREEGTQKHVEEKTPSPREGVTSHSSPRANDALRDA DM R EPSPLSSPEGLVAP MWEE KGVELGETIDVDGAH ARGSGSNYGGGGDTSCPRTPGDVR DASGAGDDDPAPQLL+AGEAAPLAT KRPEAA  QQPEDR+HSTSGMKTSSAP ATTD+VEAAGTNVTSNEQ ILTARSGNYSLE+GDET ASEHQ TRDQAKRLALEVARLRSSLRATTSELNTERSTRVRLEDEWWRRMQEWEEK G LVASKQEAER ARTAEED+ARLLVKEK+RE EV SERLA+E+RQEK DIAM GVV VQDRLIQALRTELE+TD A+RAAQDNALEAK+QLRLYV+DFLLWRNR KHLEALLI+LGH PQPGLH E  LS GSPSSKEHKRPEAP RQNVDDKEQE DPR PVA  PVEYGGSMQAGDDA GLSIPEKYARYFETTTGGY APPSNAA+ GTQR EGSELDSETA                      +AYFQRSMKAQQEIS RLGKDLARARADLQSIYESN+AKARR GGETST R SL HETDGKS+AASS+RAQ  GTGR  GDSPS  D+RRVQDRTAVQG+      SAPAASFPEGSHMARVLAVLLGE ST NGT VAGLSDA  PSLRLTDYPQMLQAVFGGGP   L DSAVTHRRRVMVSEAPQRGQTGQGY   DEGRFP QP SHSRTLTE K+QART  SHAR DRRHGPGAT R+ T V  HNR CGGNGG G+AGCRPQDKAAVEGASGIPDDVDP GGRESRSLA AFRGYEAKSSLLQRWLGEK+SPSPSP RAMPVT
Sbjct:    4 CAVILFASAEPVPAAVAFATAAVEDSPWNNWDVQSMTGIVHITNETSKLSRETSDDEGPRADVNGRKHRNTIPQDTPIDQEKGSMARECVEIPSGSKDTAPAMDKVQNKSMQRGESKTRSESDFGGALEGQRQREEGTQKHVEEKTPSPREGVTSHSSPRANDALRDAGDMFRHEPSPLSSPEGLVAPRMWEEIKGVELGETIDVDGAHEARGSGSNYGGGGDTSCPRTPGDVRGDASGAGDDDPAPQLLNAGEAAPLATGKRPEAATRQQPEDRMHSTSGMKTSSAPAATTDDVEAAGTNVTSNEQHILTARSGNYSLEQGDETRASEHQNTRDQAKRLALEVARLRSSLRATTSELNTERSTRVRLEDEWWRRMQEWEEKHGCLVASKQEAERAARTAEEDMARLLVKEKNREEEVASERLAQESRQEKADIAMKGVVTVQDRLIQALRTELELTDSARRAAQDNALEAKDQLRLYVNDFLLWRNRAKHLEALLIELGHAPQPGLHAEIPLSYGSPSSKEHKRPEAPQRQNVDDKEQEVDPRTPVAKGPVEYGGSMQAGDDANGLSIPEKYARYFETTTGGYSAPPSNAAYSGTQRIEGSELDSETARAAAAWSTRAAMTELSSSSSSSQAYFQRSMKAQQEISFRLGKDLARARADLQSIYESNEAKARRGGGETSTYRASLPHETDGKSKAASSKRAQRNGTGRKVGDSPSREDKRRVQDRTAVQGVATQDNVSAPAASFPEGSHMARVLAVLLGEDSTVNGTGVAGLSDASPPSLRLTDYPQMLQAVFGGGPEESLQDSAVTHRRRVMVSEAPQRGQTGQGY---DEGRFPRQPRSHSRTLTEGKRQARTILSHARADRRHGPGATERS-THVHAHNRVCGGNGGTGNAGCRPQDKAAVEGASGIPDDVDPAGGRESRSLATAFRGYEAKSSLLQRWLGEKRSPSPSPFRAMPVT 959
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1048.453.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized0.000e+095.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized0.000e+085.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1048contigEcto-sp9_F_contig1048:3974..8454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007070.1
Exons5
Model size3012
Cds size3012
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1048.453.1prot_Ecto-sp9_F_contig1048.453.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1048 3974..8454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928258.6436422-CDS-Ecto-sp9_F_contig1048:3973..54371622928258.6436422-CDS-Ecto-sp9_F_contig1048:3973..5437Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 3974..5437 -
1692277812.2699902-CDS-Ecto-sp9_F_contig1048:3973..54371692277812.2699902-CDS-Ecto-sp9_F_contig1048:3973..5437Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 3974..5437 -
1622928258.666034-CDS-Ecto-sp9_F_contig1048:5724..58891622928258.666034-CDS-Ecto-sp9_F_contig1048:5724..5889Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 5725..5889 -
1692277812.276883-CDS-Ecto-sp9_F_contig1048:5724..58891692277812.276883-CDS-Ecto-sp9_F_contig1048:5724..5889Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 5725..5889 -
1622928258.6881654-CDS-Ecto-sp9_F_contig1048:6183..63061622928258.6881654-CDS-Ecto-sp9_F_contig1048:6183..6306Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 6184..6306 -
1692277812.283999-CDS-Ecto-sp9_F_contig1048:6183..63061692277812.283999-CDS-Ecto-sp9_F_contig1048:6183..6306Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 6184..6306 -
1622928258.7114606-CDS-Ecto-sp9_F_contig1048:6865..79731622928258.7114606-CDS-Ecto-sp9_F_contig1048:6865..7973Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 6866..7973 -
1692277812.291291-CDS-Ecto-sp9_F_contig1048:6865..79731692277812.291291-CDS-Ecto-sp9_F_contig1048:6865..7973Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 6866..7973 -
1622928258.726641-CDS-Ecto-sp9_F_contig1048:8302..84541622928258.726641-CDS-Ecto-sp9_F_contig1048:8302..8454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 8303..8454 -
1692277812.299165-CDS-Ecto-sp9_F_contig1048:8302..84541692277812.299165-CDS-Ecto-sp9_F_contig1048:8302..8454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 8303..8454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1048.453.1

>prot_Ecto-sp9_F_contig1048.453.1 ID=prot_Ecto-sp9_F_contig1048.453.1|Name=mRNA_Ecto-sp9_F_contig1048.453.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1004bp
MVERVNDVCKQDVKQRTLRITWKAERPTDEELLDAFRPLGDVVRVQAKAS
LCAAILFASAEPVPAAVAFATAAVEDSPWNNWDVQSMAGIVHITNEMIKL
SRETSDDEGPQADVNGRKHWNTIPQDTPIDQERGSMARECVEISSGTKDT
APAMDTVQNNSTQRRESKTRSESDSGGALEGQRQREEGTQKHVEEKTPSP
REGVTSHSSPRANDALRDASDMVRQEPSPLSSPEGLVAPPMWEEDKGVEL
GETIDVDGAHGARGSGSNYGGGGDTSCPRTPGDVRADASGAGDDDPAPQL
LHAGEAAPLATSKRPEAARCQQPEDRIHSTSGMKTSSAPTATTDNVEAAG
TNVTSNEQDILTARSGNYSLERGDETGASEHQKTRDQAKRLALEVARLRS
SLRATTSELNTERSTRVRLEDEWWRRMQEWEEKRGRLVASKQEAERTART
AEEDVARLLVKEKDREGEVVSERLARETRQEKGDIAMNGVVKVQDRLIQA
LRTELEMTDRAKRAAQDNALEAKEQLRLYVDDFLLWRNRVKHLEALLIDL
GHPPQPGLHTETALSCGSPSSKEHKRPEAPHRQNVDDKEQEADPRAPVAG
EPVEYGGSMQAGDDAKGLSIPEKYARYFETTTGGYPAPPSNAAFPGTQRT
EGSELDSETAAAAAAWSTRAAMAESSSSSSSSRAYFQRSMKAQQEISIRL
GKDLARARADLQSIYESNKAKARRSGGETSTCRGSLLHETDGKSEAASSE
RAQGIGTGRNGGDSPSDERRVQDRTAVQGISAPAASFPEGSHMARVLAVL
LGEGSTANGTAVAGLSDAPTPSLRLTDYPQMLQAVFGGGPAAPLPDSAVT
HRRRVMVSEAPQRGQTGQGYGDDDEGRFPTQPPSHSRTLTEEKQQARTTQ
SHARVDRRHGPGATGRNCTEVQVHNRTCGGNGGRGDAGCRPQDKAAVEGA
SGIPDDVDPGGGRESRSLARAFRGYEAKSSLLQRWLGEKKSPSPSPSRAM
PVT*
back to top

mRNA from alignment at Ecto-sp9_F_contig1048:3974..8454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1048.453.1 ID=mRNA_Ecto-sp9_F_contig1048.453.1|Name=mRNA_Ecto-sp9_F_contig1048.453.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4481bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1048:3974..8454- (Ectocarpus species9 EcSCA_722f female)
ATGGTGGAAAGGGTCAACGACGTATGCAAACAAGATGTGAAGCAGAGAAC
CTTGAGAATAACGTGGAAAGCGGAGAGGCCCACGGACGAGGAGTTGCTCG
ACGCGTTTCGTCCTCTGGGAGATGTTGTTCGTGTGCAAGCCAAGGCGAGT
CTGTCTACTGTAGATGTACATACTGCTGTAGACTACTTCCACCAATCGTC
CATTTAGAAGATTGTTGTTGTCGTATCGTGGGTTGTGATATTCACCTCCA
GATATCCACCTATCCTGGATCATGGATCATTGGGAGTGCGGCTGTGAGAT
GGTGATTCGAATACCTCGCTCAAGGGACCCTCCGCGAGGGAGTCGCGGGA
AGATCGAACCCGTTTTCCGTTGTGTGCCAGAGAAAGCGGCATCAAACAGC
ACAACCCTCATCCTTCAGGAGAAAAAATCTTTTTATCATCGCTCAAGTTA
CATTCTCCTGAACTCATTCTCAACAGGAAAGGTGCGCGGCAATTCTCTTC
GCTTCGGCCGAGCCTGTCCCTGCTGCCGTCGCGTTCGCTACCGCTGCTGT
TGAAGACAGCCCATGGAACAACTGGGATGTGCAATCGATGGCGGGAATAG
TGCACATTACAAACGAAATGATCAAGCTGTCGAGGGAGACGTCAGACGAT
GAGGGGCCGCAAGCTGACGTCAACGGGCGAAAACACTGGAACACGATTCC
ACAAGACACACCCATCGACCAGGAAAGAGGCAGCATGGCCCGAGAATGTG
TTGAAATTTCATCTGGAACGAAAGACACCGCTCCTGCCATGGATACGGTA
CAGAACAACAGCACGCAGAGAAGAGAATCGAAGACGCGTTCGGAGTCCGA
TTCCGGAGGCGCCCTCGAGGGGCAGCGCCAGCGCGAAGAGGGTACTCAGA
AGCATGTGGAGGAGAAGACCCCAAGTCCGCGAGAAGGCGTAACATCCCAC
AGCAGTCCTCGAGCCAACGATGCTCTCAGAGATGCGAGTGATATGGTCAG
GCAGGAGCCGAGCCCTCTTTCGTCTCCAGAGGGACTCGTGGCACCGCCGA
TGTGGGAAGAGGACAAGGGGGTGGAGCTGGGCGAGACGATCGATGTCGAT
GGAGCACATGGAGCACGTGGCAGTGGTTCGAACTACGGGGGCGGTGGAGA
TACATCGTGTCCAAGAACTCCCGGAGATGTCAGAGCAGACGCGTCGGGTG
CTGGTGACGACGACCCTGCTCCACAGCTTCTTCATGCGGGTGAAGCAGCA
CCGTTGGCGACAAGCAAGCGTCCCGAAGCCGCTAGATGTCAGCAGCCAGA
GGATCGAATACACTCCACGTCTGGCATGAAGACTTCGTCGGCACCAACAG
CAACAACAGACAATGTGGAAGCCGCAGGAACCAACGTAACGTCGAACGAG
CAAGACATACTGACAGCACGGAGCGGAAACTACTCTTTGGAACGGGGTGA
CGAAACAGGGGCCTCAGAACACCAGAAGACCCGGGACCAGGCCAAGCGAC
TCGCCCTAGAAGTCGCACGTCTGCGGTCTTCGTTACGTGCCACCACTTCG
GAGCTGAACACAGAGCGGTCTACTCGCGTGCGACTAGAGGTCAGAATGCG
AATGTTGCCGAACACCTTTCACAGACGTCTTCTCTGCCACTGAAACCGCC
GACAACAAATCAAATTTCTAGCGGAATTATCCCACCTGGTTTATCAAGAA
GATGTGCATCAACCTTGTCATGAATTCGAATATCGTCGTTATCACCAATG
AGGGCTTAGGATCCTTCCGTAGACGACGGTCGAGGGGTTCCCAAGGTCGT
GGTACATTTCGCCCGCTACTGAGGGCAGGCAGGTTTCCTTCACAAGTATT
TAGTGTAGGAGAGATAGGCCAACGAGAGGGTGGATCGAGCGGCGGGGTCT
CCTTGAGGGTCTGCATGTCCGCATGTCCATGACGACAGGCGGCAAAGCAG
AGTCGCATATCGGCCGATGATGCCCCGAGGGTCGCACACCCGCCAATGGT
ATCCCTCCTTCCAAAGGCTATCGAGCTGTTCCAAGGACGTCTCTTCCTAC
ACTCTTCTATGCCTGCTCATGGACCATGCCTCTTGTACACTGGTCATCCA
CAGTTGGTCATTTCTCAACTAAGAAAAACTTCAATGGGTTTGCCGCAGGA
CGAGTGGTGGAGACGAATGCAGGAATGGGAGGAGAAGCGCGGCCGTCTTG
TAGCATCTAAGCAGGAAGCCGAACGGACAGCAAGAACAGCAGAGGAGGAT
GTGGCGAGACTGCTCGTCAAGGTACGCTAGTGTACACCAACACCACACCC
AGCGTTTGGTATCCCTATAGCGCGCCCGCAACACATGTAGTAGGTGCAAC
AATCCAGGCCGTAAAACGTAGTTTCAAGTCTGGAGGTATCGTTTTGTGCA
AACCTGACCTGTTCCATGACCCTTGCTACGTCAAAGTCGCTACATAATCT
GATATCCATCACTCCAGGAAATCAAGCCCACCTTCGTGTCCAACCCCTAC
CATTTTGTCACCCTCTGTCCGGTTGTGTCTATTGTTGTCCTCACTGTCCG
GAACGGCATTGGCAGGAGAAGGACCGCGAGGGGGAGGTCGTGTCGGAGCG
TTTGGCCCGAGAAACTAGGCAAGAAAAGGGGGACATCGCGATGAACGGGG
TGGTAAAGGTCCAAGATCGCCTCATCCAGGCTTTGCGGACCGAGCTGGAG
ATGACCGACAGAGCCAAGCGGGCGGCTCAGGTAATACCCCCGTCGCCCGA
TGCCCTCCCTTCGCTCTGCTGCTCCAAGAAGGTCCGCCTCAATGGAGTTG
AGTAGTGTGCCACGCAGGCTTGCCGCACGTGCAGCGAGAGGCAGCATCAT
ACCTTAGATTGGTGGGGCGGTTAACCTTTACCAAGGCATGAGAAGTGTCG
GCTTGTACCACCGTTGCTCGTATCAACCAGTCGCGTCCTTGCCCTTGAGC
ATTTCGTCTTGTGAAGAATCTCTCCCCTCCTCCCGCTTCGTCCGCGGCGG
GCGCAACAACCATGCAGGATAACGCTCTTGAGGCCAAAGAGCAGCTCCGC
CTTTACGTTGATGACTTCCTACTCTGGCGCAACCGTGTGAAGCACCTGGA
GGCCCTCTTGATAGATCTGGGCCACCCACCGCAGCCGGGGTTACACACCG
AAACCGCGTTGTCGTGCGGCTCGCCATCTTCGAAAGAACACAAGCGCCCA
GAAGCCCCCCATCGACAAAACGTTGACGACAAAGAGCAAGAAGCGGACCC
AAGGGCACCTGTCGCAGGGGAGCCAGTTGAGTACGGTGGGAGCATGCAGG
CGGGCGACGACGCTAAAGGCCTGTCGATTCCCGAGAAGTACGCACGATAC
TTCGAAACCACCACTGGTGGATACCCCGCCCCACCTTCGAACGCGGCCTT
TCCAGGCACGCAAAGGACAGAAGGTTCAGAGCTAGACTCGGAGACAGCGG
CAGCTGCGGCAGCGTGGTCGACGCGTGCGGCAATGGCGGAATCGTCCTCC
TCTTCCTCTTCGTCACGGGCATACTTCCAGCGGTCTATGAAGGCTCAGCA
AGAGATTTCCATCCGACTCGGGAAAGACCTGGCGAGAGCCCGCGCCGACT
TGCAGTCGATCTACGAGAGCAACAAGGCAAAGGCCAGGCGTAGCGGCGGC
GAGACCTCAACGTGCCGCGGCAGCTTGTTGCATGAAACCGACGGGAAAAG
TGAGGCTGCCTCGTCGGAAAGAGCGCAAGGTATTGGGACGGGAAGAAATG
GCGGCGATAGCCCATCCGACGAGCGCCGAGTTCAAGACCGGACAGCAGTG
CAAGGCATCAGCGCTCCGGCCGCTAGCTTTCCCGAAGGCTCGCACATGGC
CCGAGTACTGGCAGTTTTGCTCGGCGAAGGCTCCACCGCCAATGGGACGG
CAGTAGCGGGGTTGTCGGACGCACCGACCCCCTCGTTGCGCTTGACCGAC
TACCCTCAGATGCTTCAGGCTGTGTTCGGCGGGGGACCAGCAGCGCCTCT
TCCGGATTCTGCTGTGACCCACAGGCGACGCGTCATGGTCTCAGAGGCAC
CGCAGCGTGGACAAACTGGGCAAGGATATGGGGATGACGACGAAGGGCGG
TTTCCAACACAACCTCCGTCGCACAGCCGCACCCTCACCGAAGAGAAACA
GCAAGCTCGAACCACACAGAGTCACGCTCGAGTCGACAGAAGACATGGAC
CCGGTGCTACAGGGAGGAACTGTACAGAGGTACAAGTCCACAACAGAACT
TGCGGTGGCAATGGAGGTAGGGGGGATGCAGGCTGTCGGCCACAGGACAA
GGCTGCGGTGGAGGGGGCGTCCGGGATACCTGATGACGTGGACCCCGGGG
GGGGGCGAGAGAGCCGCTCGTTAGCTAGAGCCTTCCGAGGGTACGAGGCG
AAGAGCTCCCTTCTCCAAAGGTGGCTGGGCGAAAAAAAATCCCCGTCGCC
GTCTCCCTCTCGGGCAATGCCCGTTACATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1048:3974..8454-

>mRNA_Ecto-sp9_F_contig1048.453.1 ID=mRNA_Ecto-sp9_F_contig1048.453.1|Name=mRNA_Ecto-sp9_F_contig1048.453.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=6024bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1048:3974..8454- (Ectocarpus species9 EcSCA_722f female)
ATGGTGGAAAGGGTCAACGACGTATGCAAACAAGATGTGAAGCAGAGAAC
CTTGAGAATAACGTGGAAAGCGGAGAGGCCCACGGACGAGGAGTTGCTCG
ACGCGTTTCGTCCTCTGGGAGATGTTGTTCGTGTGCAAGCCAAGGCGAGT
CTATGGTGGAAAGGGTCAACGACGTATGCAAACAAGATGTGAAGCAGAGA
ACCTTGAGAATAACGTGGAAAGCGGAGAGGCCCACGGACGAGGAGTTGCT
CGACGCGTTTCGTCCTCTGGGAGATGTTGTTCGTGTGCAAGCCAAGGCGA
GTCTGTGCGCGGCAATTCTCTTCGCTTCGGCCGAGCCTGTCCCTGCTGCC
GTCGCGTTCGCTACCGCTGCTGTTGAAGACAGCCCATGGAACAACTGGGA
TGTGCAATCGATGGCGGGAATAGTGCACATTACAAACGAAATGATCAAGC
TGTCGAGGGAGACGTCAGACGATGAGGGGCCGCAAGCTGACGTCAACGGG
CGAAAACACTGGAACACGATTCCACAAGACACACCCATCGACCAGGAAAG
AGGCAGCATGGCCCGAGAATGTGTTGAAATTTCATCTGGAACGAAAGACA
CCGCTCCTGCCATGGATACGGTACAGAACAACAGCACGCAGAGAAGAGAA
TCGAAGACGCGTTCGGAGTCCGATTCCGGAGGCGCCCTCGAGGGGCAGCG
CCAGCGCGAAGAGGGTACTCAGAAGCATGTGGAGGAGAAGACCCCAAGTC
CGCGAGAAGGCGTAACATCCCACAGCAGTCCTCGAGCCAACGATGCTCTC
AGAGATGCGAGTGATATGGTCAGGCAGGAGCCGAGCCCTCTTTCGTCTCC
AGAGGGACTCGTGGCACCGCCGATGTGGGAAGAGGACAAGGGGGTGGAGC
TGGGCGAGACGATCGATGTCGATGGAGCACATGGAGCACGTGGCAGTGGT
TCGAACTACGGGGGCGGTGGAGATACATCGTGTCCAAGAACTCCCGGAGA
TGTCAGAGCAGACGCGTCGGGTGCTGGTGACGACGACCCTGCTCCACAGC
TTCTTCATGCGGGTGAAGCAGCACCGTTGGCGACAAGCAAGCGTCCCGAA
GCCGCTAGATGTCAGCAGCCAGAGGATCGAATACACTCCACGTCTGGCAT
GAAGACTTCGTCGGCACCAACAGCAACAACAGACAATGTGGAAGCCGCAG
GAACCAACGTAACGTCGAACGAGCAAGACATACTGACAGCACGGAGCGGA
AACTACTCTTTGGAACGGGGTGACGAAACAGGGGCCTCAGAACACCAGAA
GACCCGGGACCAGGCCAAGCGACTCGCCCTAGAAGTCGCACGTCTGCGGT
CTTCGTTACGTGCCACCACTTCGGAGCTGAACACAGAGCGGTCTACTCGC
GTGCGACTAGAGGTGCGCGGCAATTCTCTTCGCTTCGGCCGAGCCTGTCC
CTGCTGCCGTCGCGTTCGCTACCGCTGCTGTTGAAGACAGCCCATGGAAC
AACTGGGATGTGCAATCGATGGCGGGAATAGTGCACATTACAAACGAAAT
GATCAAGCTGTCGAGGGAGACGTCAGACGATGAGGGGCCGCAAGCTGACG
TCAACGGGCGAAAACACTGGAACACGATTCCACAAGACACACCCATCGAC
CAGGAAAGAGGCAGCATGGCCCGAGAATGTGTTGAAATTTCATCTGGAAC
GAAAGACACCGCTCCTGCCATGGATACGGTACAGAACAACAGCACGCAGA
GAAGAGAATCGAAGACGCGTTCGGAGTCCGATTCCGGAGGCGCCCTCGAG
GGGCAGCGCCAGCGCGAAGAGGGTACTCAGAAGCATGTGGAGGAGAAGAC
CCCAAGTCCGCGAGAAGGCGTAACATCCCACAGCAGTCCTCGAGCCAACG
ATGCTCTCAGAGATGCGAGTGATATGGTCAGGCAGGAGCCGAGCCCTCTT
TCGTCTCCAGAGGGACTCGTGGCACCGCCGATGTGGGAAGAGGACAAGGG
GGTGGAGCTGGGCGAGACGATCGATGTCGATGGAGCACATGGAGCACGTG
GCAGTGGTTCGAACTACGGGGGCGGTGGAGATACATCGTGTCCAAGAACT
CCCGGAGATGTCAGAGCAGACGCGTCGGGTGCTGGTGACGACGACCCTGC
TCCACAGCTTCTTCATGCGGGTGAAGCAGCACCGTTGGCGACAAGCAAGC
GTCCCGAAGCCGCTAGATGTCAGCAGCCAGAGGATCGAATACACTCCACG
TCTGGCATGAAGACTTCGTCGGCACCAACAGCAACAACAGACAATGTGGA
AGCCGCAGGAACCAACGTAACGTCGAACGAGCAAGACATACTGACAGCAC
GGAGCGGAAACTACTCTTTGGAACGGGGTGACGAAACAGGGGCCTCAGAA
CACCAGAAGACCCGGGACCAGGCCAAGCGACTCGCCCTAGAAGTCGCACG
TCTGCGGTCTTCGTTACGTGCCACCACTTCGGAGCTGAACACAGAGCGGT
CTACTCGCGTGCGACTAGAGGACGAGTGGTGGAGACGAATGCAGGAATGG
GAGGAGAAGCGCGGCCGTCTTGTAGCATCTAAGCAGGAAGCCGAACGGAC
AGCAAGAACAGCAGAGGAGGATGTGGCGAGACTGCTCGTCAAGGACGAGT
GGTGGAGACGAATGCAGGAATGGGAGGAGAAGCGCGGCCGTCTTGTAGCA
TCTAAGCAGGAAGCCGAACGGACAGCAAGAACAGCAGAGGAGGATGTGGC
GAGACTGCTCGTCAAGGAGAAGGACCGCGAGGGGGAGGTCGTGTCGGAGC
GTTTGGCCCGAGAAACTAGGCAAGAAAAGGGGGACATCGCGATGAACGGG
GTGGTAAAGGTCCAAGATCGCCTCATCCAGGCTTTGCGGACCGAGCTGGA
GATGACCGACAGAGCCAAGCGGGCGGCTCAGGAGAAGGACCGCGAGGGGG
AGGTCGTGTCGGAGCGTTTGGCCCGAGAAACTAGGCAAGAAAAGGGGGAC
ATCGCGATGAACGGGGTGGTAAAGGTCCAAGATCGCCTCATCCAGGCTTT
GCGGACCGAGCTGGAGATGACCGACAGAGCCAAGCGGGCGGCTCAGGATA
ACGCTCTTGAGGCCAAAGAGCAGCTCCGCCTTTACGTTGATGACTTCCTA
CTCTGGCGCAACCGTGTGAAGCACCTGGAGGCCCTCTTGATAGATCTGGG
CCACCCACCGCAGCCGGGGTTACACACCGAAACCGCGTTGTCGTGCGGCT
CGCCATCTTCGAAAGAACACAAGCGCCCAGAAGCCCCCCATCGACAAAAC
GTTGACGACAAAGAGCAAGAAGCGGACCCAAGGGCACCTGTCGCAGGGGA
GCCAGTTGAGTACGGTGGGAGCATGCAGGCGGGCGACGACGCTAAAGGCC
TGTCGATTCCCGAGAAGTACGCACGATACTTCGAAACCACCACTGGTGGA
TACCCCGCCCCACCTTCGAACGCGGCCTTTCCAGGCACGCAAAGGACAGA
AGGTTCAGAGCTAGACTCGGAGACAGCGGCAGCTGCGGCAGCGTGGTCGA
CGCGTGCGGCAATGGCGGAATCGTCCTCCTCTTCCTCTTCGTCACGGGCA
TACTTCCAGCGGTCTATGAAGGCTCAGCAAGAGATTTCCATCCGACTCGG
GAAAGACCTGGCGAGAGCCCGCGCCGACTTGCAGTCGATCTACGAGAGCA
ACAAGGCAAAGGCCAGGCGTAGCGGCGGCGAGACCTCAACGTGCCGCGGC
AGCTTGTTGCATGAAACCGACGGGAAAAGTGAGGCTGCCTCGTCGGAAAG
AGCGCAAGGTATTGGGACGGGAAGAAATGGCGGCGATAGCCCATCCGACG
AGCGCCGAGTTCAAGACCGGACAGCAGTGCAAGGCATCAGCGCTCCGGCC
GCTAGCTTTCCCGAAGGCTCGCACATGGCCCGAGTACTGGCAGTTTTGCT
CGGCGAAGGCTCCACCGCCAATGGGACGGCAGTAGCGGGGTTGTCGGACG
CACCGACCCCCTCGTTGCGCTTGACCGACTACCCTCAGATGCTTCAGGCT
GTGTTCGGCGGGGGACCAGCAGCGCCTCTTCCGGATTCTGCTGTGACCCA
CAGGCGACGCGTCATGGTCTCAGAGGCACCGCAGCGTGGACAAACTGGGC
AAGGATATGGGGATGACGACGAAGGGCGGTTTCCAACACAACCTCCGTCG
CACAGCCGCACCCTCACCGAAGAGAAACAGCAAGCTCGAACCACACAGAG
TCACGCTCGAGTCGACAGAAGACATGGACCCGGTGCTACAGGGAGGAACT
GTACAGAGGTACAAGTCCACAACAGAACTTGCGGTGGCAATGGAGGTAGG
GGGGATGCAGGCTGTCGGCCACAGGACAAGGCTGCGGTGGAGGGGGCGTC
CGGGATACCTGATGACGTGGACCCCGGGGGGGGGCGAGAGAGCCGCTCGT
TAGCTAGAGCCTTCCGAGGGTACGAGGCGAAGAGCTCCCTTCTCCAAAGG
TGGCTGGGCGAAAAAAAATCCCCGTCGCCGTCTCCCTCTCGGGCAATGCC
CGTTACATAGGATAACGCTCTTGAGGCCAAAGAGCAGCTCCGCCTTTACG
TTGATGACTTCCTACTCTGGCGCAACCGTGTGAAGCACCTGGAGGCCCTC
TTGATAGATCTGGGCCACCCACCGCAGCCGGGGTTACACACCGAAACCGC
GTTGTCGTGCGGCTCGCCATCTTCGAAAGAACACAAGCGCCCAGAAGCCC
CCCATCGACAAAACGTTGACGACAAAGAGCAAGAAGCGGACCCAAGGGCA
CCTGTCGCAGGGGAGCCAGTTGAGTACGGTGGGAGCATGCAGGCGGGCGA
CGACGCTAAAGGCCTGTCGATTCCCGAGAAGTACGCACGATACTTCGAAA
CCACCACTGGTGGATACCCCGCCCCACCTTCGAACGCGGCCTTTCCAGGC
ACGCAAAGGACAGAAGGTTCAGAGCTAGACTCGGAGACAGCGGCAGCTGC
GGCAGCGTGGTCGACGCGTGCGGCAATGGCGGAATCGTCCTCCTCTTCCT
CTTCGTCACGGGCATACTTCCAGCGGTCTATGAAGGCTCAGCAAGAGATT
TCCATCCGACTCGGGAAAGACCTGGCGAGAGCCCGCGCCGACTTGCAGTC
GATCTACGAGAGCAACAAGGCAAAGGCCAGGCGTAGCGGCGGCGAGACCT
CAACGTGCCGCGGCAGCTTGTTGCATGAAACCGACGGGAAAAGTGAGGCT
GCCTCGTCGGAAAGAGCGCAAGGTATTGGGACGGGAAGAAATGGCGGCGA
TAGCCCATCCGACGAGCGCCGAGTTCAAGACCGGACAGCAGTGCAAGGCA
TCAGCGCTCCGGCCGCTAGCTTTCCCGAAGGCTCGCACATGGCCCGAGTA
CTGGCAGTTTTGCTCGGCGAAGGCTCCACCGCCAATGGGACGGCAGTAGC
GGGGTTGTCGGACGCACCGACCCCCTCGTTGCGCTTGACCGACTACCCTC
AGATGCTTCAGGCTGTGTTCGGCGGGGGACCAGCAGCGCCTCTTCCGGAT
TCTGCTGTGACCCACAGGCGACGCGTCATGGTCTCAGAGGCACCGCAGCG
TGGACAAACTGGGCAAGGATATGGGGATGACGACGAAGGGCGGTTTCCAA
CACAACCTCCGTCGCACAGCCGCACCCTCACCGAAGAGAAACAGCAAGCT
CGAACCACACAGAGTCACGCTCGAGTCGACAGAAGACATGGACCCGGTGC
TACAGGGAGGAACTGTACAGAGGTACAAGTCCACAACAGAACTTGCGGTG
GCAATGGAGGTAGGGGGGATGCAGGCTGTCGGCCACAGGACAAGGCTGCG
GTGGAGGGGGCGTCCGGGATACCTGATGACGTGGACCCCGGGGGGGGGCG
AGAGAGCCGCTCGTTAGCTAGAGCCTTCCGAGGGTACGAGGCGAAGAGCT
CCCTTCTCCAAAGGTGGCTGGGCGAAAAAAAATCCCCGTCGCCGTCTCCC
TCTCGGGCAATGCCCGTTACATAG
back to top