mRNA_Ecto-sp9_F_contig10474.450.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10474.450.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE) HSP 1 Score: 458 bits (1179), Expect = 1.750e-156 Identity = 353/435 (81.15%), Postives = 360/435 (82.76%), Query Frame = 1
Query: 1 DVQRPIFFPTAAGSRARRLLGHSYHHRTRVADGRGGQDCXXXXGGSRMSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEXGGSSKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKAEFCGKHANDEILAAGMFGEYGDAGAAXXXXXXXXXXXXXKRKQPPPIAPYELGMGRMVPPGLSASMAARSDIPNKRTAVLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQPNDTRYVKNESLEFRPLSAPSNDRYLGAAESLAHFRPSPSERYLMEGVNSSSQQQXXXXXXX--LHFQPHQQPIQQPHGRYMNNLGGGGGEMQQFRPQQLSPNDRYGAAGLMPVGAESSAYSEEIAAVFDREMPL 1299
+VQRPIFFP ARRLLGHSYHHRTRVA RG XXXXGGSRMSQCGH NCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GE SKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXX EKAEFCGKHAND+IL+AG+FGEYGDAGA XXXX KRKQPPPIAPYELGMGRMVPPGLSA MAARSDIPNKRTAVLPAA QQPNDTRYVKNESLEFRPLSAPSNDR+LGAAESLAHFR SPSER LMEGVNSSSQQQXXXXXXX LHFQPHQQPIQ PHGRY+NNL GGGGEMQQF PQQLSPNDRYGAAGLMPV AES AYSEE+AAVFDREM L
Sbjct: 21 NVQRPIFFP------ARRLLGHSYHHRTRVAHRRG-XXXXXXXGGSRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGEVSRGSKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXSYISGQGNEKAEFCGKHANDQILSAGIFGEYGDAGAXXXXXEAGA-----KRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPAAAASVPPPFMMTPRPAFSGAPQQQ-----QQPNDTRYVKNESLEFRPLSAPSNDRHLGAAESLAHFRSSPSERCLMEGVNSSSQQQXXXXXXXXXLHFQPHQQPIQHPHGRYINNLRGGGGEMQQFWPQQLSPNDRYGAAGLMPVRAESVAYSEEVAAVFDREMSL 438
BLAST of mRNA_Ecto-sp9_F_contig10474.450.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI) HSP 1 Score: 332 bits (852), Expect = 2.200e-108 Identity = 322/386 (83.42%), Postives = 322/386 (83.42%), Query Frame = 1
Query: 142 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEXGGSSKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKAEFCGKHANDEILAAGMFGEYGDAGAAXXXXXXXXXXXXXKRKQPPPIAPYELGMGRMVPPGLSASMAARSDIPNKRTAVLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQPNDTRYVKNESLEFRPLSAPSNDRYLGAAESLAHFRPSPSERYLMEGVNSSSQQQXXXXXXXLHFQPHQQPIQQPHGRYMNNLGGGGGEMQQFRPQQLSPNDRYGAAGLMPVGAESSAYSEEIAAVFDREMPL 1299
MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX X SKIPGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NDEILAAGMFGEYGDAGA XXXXXXXX KRKQPPPIAPYELGMGRMVPPGLSA MAARSDIPNKRTAVLP AXXXXXXXXXXXXXXXXXXXXXXXXXXXX PNDTRYVKNESLEFRPLSAPSNDRYLGAAESLAHFR SPSERY MNNLGGGGGEMQQFRPQQLSPNDRYGAAGLMPVGAESSAYSEEIAAVFDREMPL
Sbjct: 1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XSKIPGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDEILAAGMFGEYGDAGATPAXXXXXXXX---KRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PNDTRYVKNESLEFRPLSAPSNDRYLGAAESLAHFRASPSERY------------------------------------MNNLGGGGGEMQQFRPQQLSPNDRYGAAGLMPVGAESSAYSEEIAAVFDREMPL 344
BLAST of mRNA_Ecto-sp9_F_contig10474.450.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW71_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 9.360e-7 Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 142 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 261
M CGHA C K+P YGVAG+KKREFCS H + GMV+V N+
Sbjct: 1 MPACGHAGCPKQPKYGVAGTKKREFCSGHRKAGMVDVVNR 40
BLAST of mRNA_Ecto-sp9_F_contig10474.450.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU8_ECTSI) HSP 1 Score: 60.1 bits (144), Expect = 2.490e-6 Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1
Query: 130 GGSRMS-QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 267
GG + S +C H C+KRPTYGV S+KRE CSQHAR MVN++ RC
Sbjct: 48 GGMQSSGKCLHPGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRC 94
BLAST of mRNA_Ecto-sp9_F_contig10474.450.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 3.540e-6 Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1
Query: 151 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 267
C CT RP+YG+ GSKK EFCS+H++ GM NV KRC
Sbjct: 31 CQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRC 69
BLAST of mRNA_Ecto-sp9_F_contig10474.450.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 7.200e-6 Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1
Query: 151 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 267
C CTK P+YG AGSKK EFC+QHA+ GMVN+ ++RC
Sbjct: 109 CKEHGCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRC 147
BLAST of mRNA_Ecto-sp9_F_contig10474.450.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 2.030e-5 Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1
Query: 151 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 267
C CT RP+YG+ G KK EFCS+H++ GM+N+ KRC
Sbjct: 27 CQEHGCTVRPSYGIDGCKKAEFCSKHSKPGMINLTKKRC 65
BLAST of mRNA_Ecto-sp9_F_contig10474.450.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP4_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 2.220e-5 Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 148 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 267
+C ++ C+KRPTYGV S+KRE CSQHAR MVN++ RC
Sbjct: 6 KCLYSGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRC 45
BLAST of mRNA_Ecto-sp9_F_contig10474.450.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 2.480e-5 Identity = 25/45 (55.56%), Postives = 29/45 (64.44%), Query Frame = 1
Query: 133 GSRMSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 267
G C C+ RP+YG SKK EFCSQHA+ GMVNV +KRC
Sbjct: 242 GRGQPSCEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRC 286
BLAST of mRNA_Ecto-sp9_F_contig10474.450.1 vs.
Match: EsV-1-7 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 3.710e-5 Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1
Query: 148 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 264
+CGH C K +YGV G+K+REFC +HA+ GMV+V +KR
Sbjct: 5 RCGHPGCGKHSSYGVKGTKEREFCGRHAKMGMVDVRSKR 43 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10474.450.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10474.450.1 >prot_Ecto-sp9_F_contig10474.450.1 ID=prot_Ecto-sp9_F_contig10474.450.1|Name=mRNA_Ecto-sp9_F_contig10474.450.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=434bp DVQRPIFFPTAAGSRARRLLGHSYHHRTRVADGRGGQDCCCCCGGSRMSQback to top mRNA from alignment at Ecto-sp9_F_contig10474:655..1956+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10474.450.1 ID=mRNA_Ecto-sp9_F_contig10474.450.1|Name=mRNA_Ecto-sp9_F_contig10474.450.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1302bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10474:655..1956+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10474:655..1956+ >mRNA_Ecto-sp9_F_contig10474.450.1 ID=mRNA_Ecto-sp9_F_contig10474.450.1|Name=mRNA_Ecto-sp9_F_contig10474.450.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2604bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10474:655..1956+ (Ectocarpus species9 EcSCA_722f female)back to top |