mRNA_Ecto-sp9_F_contig10471.447.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L776_LUPAL) HSP 1 Score: 144 bits (363), Expect = 4.440e-42 Identity = 76/99 (76.77%), Postives = 80/99 (80.81%), Query Frame = 1
Query: 1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPE-----------VTLLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLGYGLYG 264
T ++ F+S+LA LLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPP VTLLPKLRVQFAEFLQHSSLKRL ILYLTTCVG GYGLYG
Sbjct: 69 TAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFAEFLQHSSLKRLGILYLTTCVGFGYGLYG 167
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL) HSP 1 Score: 133 bits (334), Expect = 1.470e-35 Identity = 71/94 (75.53%), Postives = 75/94 (79.79%), Query Frame = 1
Query: 1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPE-----------VTLLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLG 249
T ++ F+S+LA LLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPP VTLLPKLRVQFAEFLQHSSLKRL ILYLTTCVG G
Sbjct: 153 TAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFAEFLQHSSLKRLGILYLTTCVGFG 246
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NGY3_SCHGA) HSP 1 Score: 105 bits (262), Expect = 1.140e-27 Identity = 59/94 (62.77%), Postives = 65/94 (69.15%), Query Frame = 1
Query: 1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVT-----------LLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLG 249
T ++ FNSELA LLLTF+HRAGVRPYTSSCDFAEPCVF KQS PP + LL LR FAEFL+ SLKRL ILY +TCVG G
Sbjct: 14 TAAVYRGFNSELAPLLLTFRHRAGVRPYTSSCDFAEPCVFSKQSPPPGLCPRPLLAQKPGLLLANLRRYFAEFLKCGSLKRLGILYQSTCVGFG 107
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIE2_PARPM) HSP 1 Score: 100 bits (248), Expect = 1.790e-25 Identity = 54/80 (67.50%), Postives = 60/80 (75.00%), Query Frame = 2
Query: 53 PSSTGQASDPIRRLATSQSPVFLINSRYPL-----------RSRFFRSYACNLPSSFNIVLSSALVFST*PPVSVWGTVY 259
PS TGQASDPIRRLATSQ PVFL+NSR+PL R+ F RSY LPSSFN +LSSALV+ST PPVSVWGTV+
Sbjct: 1 PSGTGQASDPIRRLATSQGPVFLVNSRHPLVCAPSPWLPKTRAPFSRSYGGILPSSFNTILSSALVYSTSPPVSVWGTVH 80
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=[Clostridium] leptum DSM 753 TaxID=428125 RepID=A7VSA7_9FIRM) HSP 1 Score: 93.6 bits (231), Expect = 1.410e-22 Identity = 56/95 (58.95%), Postives = 62/95 (65.26%), Query Frame = 1
Query: 1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPP-------EVTLLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLGYGLYG 264
T ++ FNS LA LLLTFQHRAGV PYTSS D AE CVF KQS P +L PKLR QFAEFL + S L IL+L+TCVGL YG G
Sbjct: 30 TAAVYWGFNSMLAHLLLTFQHRAGVSPYTSSFDLAETCVFAKQSPGPIHCGSISGASLFPKLRDQFAEFLNYPSPVGLRILFLSTCVGLRYGRLG 124
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Anophryoides haemophila TaxID=46462 RepID=A0A7S3IBR0_9CILI) HSP 1 Score: 92.8 bits (229), Expect = 1.690e-22 Identity = 52/84 (61.90%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVT-----------------LLPKLRVQFAEFLQHSS 201
T ++ FNSELA LLLTFQHRAGVRPYTSSCDFAEPCVF KQSL P + LPKLR QFAEFL HSS
Sbjct: 36 TAAVYWGFNSELAPLLLTFQHRAGVRPYTSSCDFAEPCVFSKQSLSPSLCDHPTPTNRKSRRPKVAPHLPKLRGQFAEFLNHSS 119
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bacteroidetes bacterium ADurb.BinA012 TaxID=1852815 RepID=A0A1V5J5Q1_9BACT) HSP 1 Score: 84.0 bits (206), Expect = 1.430e-18 Identity = 53/95 (55.79%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 1 TESMXXXFNSELALLL---LTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVT-------LLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLGYG 255
T ++ +S+L L L LTFQHRAGV PYTSS D AE CVF KQSL P + LLPKLR FAEFL ++SL L IL +TCVGL YG
Sbjct: 61 TAAVYWGLSSKLRLRLPFPLTFQHRAGVSPYTSSFDLAETCVFAKQSLGPFLCGHLSVAPLLPKLRGYFAEFLNNASLAHLRILSSSTCVGLRYG 155
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L965_LUPAL) HSP 1 Score: 88.2 bits (217), Expect = 1.880e-18 Identity = 51/87 (58.62%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVTLLPKLRV----------QFAEFLQHSSLKRLSILYLT 231
T ++ F+S+LA LLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPP + LR LQHSSLKRL L L+
Sbjct: 458 TAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKYLRTWGHASSEVTRAICRVLQHSSLKRLGTLGLS 544
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077ZLA3_TRITR) HSP 1 Score: 85.5 bits (210), Expect = 2.380e-18 Identity = 52/92 (56.52%), Postives = 59/92 (64.13%), Query Frame = 1
Query: 1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVT-------LLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLGYG 255
T ++ F+S LA LLLTFQHRAGV YTSS D A+ CVF KQ L P + LLPKLR QFAEFL + S L I +L TCVGL YG
Sbjct: 122 TAAVHWGFDSMLAHLLLTFQHRAGVSSYTSSFDLAQTCVFGKQLLGPILCGSISGAPLLPKLRGQFAEFLNNPSPVGLRIFFLPTCVGLRYG 213
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Match: Uncharacterized (protein (Fragment) n=10 Tax=Eubacteriales TaxID=186802 RepID=C7H9G6_FAEPA) HSP 1 Score: 85.5 bits (210), Expect = 4.030e-18 Identity = 52/92 (56.52%), Postives = 59/92 (64.13%), Query Frame = 1
Query: 1 TESMXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVT-------LLPKLRVQFAEFLQHSSLKRLSILYLTTCVGLGYG 255
T ++ F+S LA LLLTFQHRAGV YTSS D A+ CVF KQ L P + LLPKLR QFAEFL + S L I +L TCVGL YG
Sbjct: 157 TAAVHWGFDSMLAHLLLTFQHRAGVSSYTSSFDLAQTCVFGKQLLGPILCGSISGAPLLPKLRGQFAEFLNNPSPVGLRIFFLPTCVGLRYG 248 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10471.447.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10471.447.1 >prot_Ecto-sp9_F_contig10471.447.1 ID=prot_Ecto-sp9_F_contig10471.447.1|Name=mRNA_Ecto-sp9_F_contig10471.447.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp MXXXFNSELALLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPEVTLLPback to top mRNA from alignment at Ecto-sp9_F_contig10471:1156..1452+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10471.447.1 ID=mRNA_Ecto-sp9_F_contig10471.447.1|Name=mRNA_Ecto-sp9_F_contig10471.447.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=297bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10471:1156..1452+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10471:1156..1452+ >mRNA_Ecto-sp9_F_contig10471.447.1 ID=mRNA_Ecto-sp9_F_contig10471.447.1|Name=mRNA_Ecto-sp9_F_contig10471.447.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10471:1156..1452+ (Ectocarpus species9 EcSCA_722f female)back to top |