mRNA_Ecto-sp9_F_contig1046.438.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1046.438.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ7_9PHAE) HSP 1 Score: 806 bits (2082), Expect = 5.080e-278 Identity = 517/679 (76.14%), Postives = 530/679 (78.06%), Query Frame = 1
Query: 7 RLSTEVERLRGENGHLTRGIAVAEARGSELELRLQAALKSKETDAAAAAAREEALRAAAEQARARADTMSQSLAEAVREQSGLLTETANAKVAAEVLEAKSRAAEVEMARAAGRETARAQAAANDCAPTAINLPDPGWEVDNMLAEKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGYLKSSRQELGELRHLAWKLEQMGRNSFAHMDGNSQAVRHLEGELHARGMAGTVGGEEAGRGANREEEREHGRSLPSGGWARGRSEGGGKEEAGLPCARRRSVPQALSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEEFVRHCTERVAVRVERLERAVRQADRKXXXXXXXXXXXEAAGATDRKSADTLKRVVKGISSILLDRLGVTMPTCLDGGEDVGERGQAEMLERGLEELTAAVTDALSKVKERAKQALPAQPHGDSLAPGDGRHRRSTLDGMVWGERSKDDFNMLAQLQKIEAESELQSLQARLDDMTEKYSRAIADQEIVDSAPLREERERAKQELARAARAHSGVVSALEVTLAAEKSHCQDLRLKLERQTREHQVAQADVDQRLLQTQQELXXXXXXXXXXXXXXXRESARRARLDKKYSELEDRGLVSPRSVXXXXXXXXXXXXXXXXXXVWRPEATTRKFSGESERSQLAQPTVPRPSSVRLV 2043
RLSTEVERLRGENGHL RGIA AEARGSELELRLQAALKSKE DAAA AAREEALRA AEQARARADTMSQSLAE MLA+KLQEASTHISELRTVLRQEVRRREAAEAEVSEAQG FAHMDGNSQAVRHLEGELHARG+AGTVGG EAGRG REEERE GRS+ SGG ARGRSEGGGKEEAGL CARRR VPQ LSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENE FVRHCTERVAVRVERLERAVRQA +K EAAGA DRKSADTLKRVVKGISSILLDRL VTMPT L GGE+ GERGQ EMLERGLEELTAAVTDALSKVKERAKQA+PAQPHGDSLAPG+GR+ ST+DGMVWGERSKDDFNMLAQLQKIEAES+LQSLQARLDDMTEKYSRAIADQE VDS PLREE+ERAKQELARAARAHSG+VSALEVTLAAEKSHCQDLRLKLERQTREHQVA ADVDQRLLQTQ XXXXXXXXXXXXXX RE ARRARLDKKYSELEDRGLVSPRSVXXXXXXXX V RPEATTRKFSGESERSQLAQ T+PRPSSVR V
Sbjct: 299 RLSTEVERLRGENGHLMRGIADAEARGSELELRLQAALKSKEIDAAAGAAREEALRATAEQARARADTMSQSLAE-------------------------------------------------------------------MLADKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQG--------------------------FAHMDGNSQAVRHLEGELHARGVAGTVGGGEAGRGPLREEEREDGRSMLSGGRARGRSEGGGKEEAGLLCARRRRVPQGLSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEVFVRHCTERVAVRVERLERAVRQAGQKQAEAQRQASEAEAAGAIDRKSADTLKRVVKGISSILLDRLAVTMPTYLRGGEEAGERGQ-EMLERGLEELTAAVTDALSKVKERAKQAVPAQPHGDSLAPGNGRYCMSTVDGMVWGERSKDDFNMLAQLQKIEAESKLQSLQARLDDMTEKYSRAIADQETVDSTPLREEQERAKQELARAARAHSGIVSALEVTLAAEKSHCQDLRLKLERQTREHQVALADVDQRLLQTQXXXXXXXXXXXXXXXXXDRECARRARLDKKYSELEDRGLVSPRSVXXXXXXXX----------VRRPEATTRKFSGESERSQLAQATLPRPSSVRYV 873
BLAST of mRNA_Ecto-sp9_F_contig1046.438.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R8_ECTSI) HSP 1 Score: 592 bits (1525), Expect = 1.960e-196 Identity = 355/413 (85.96%), Postives = 362/413 (87.65%), Query Frame = 1
Query: 1 KRRLSTEVERLRGENGHLTRGIAVAEARGSELELRLQAALKSKETDAAAAAAREEALRAAAEQARARADTMSQSLAEAVREQSGLLTETANAKVAAEVLEAKSRAAEVEMARAAGRETARAQAAANDCAPTAINLPDPGWEVDNMLAEKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGYLKSSRQELGELRHLAWKLEQMGRNSFAHMDGNSQAVRHLEGELHARGMAGTVGGEEAGRGANREEEREHGRSLPSGGWARGRSEGGGKEEAGLPCARRRSVPQALSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEEFVRHCTERVAVRVERLERAVRQADRKXXXXXXXXXXXEAAGATDRKSADTLKRVVKGISSILLDRLGVTMPTCLDGGEDVGERGQAE 1239
K RLSTEVERLRG+NGHL +GIAVAEARGSELELRLQAALKSKETDA AAAAREEALRA AEQAR RADTMSQSLAEA+REQSGLLTETANAKVAAEVLEAKSRAAEVE NMLAEKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGYLKSSRQELGELRHLAWKLEQMGRNSFAHMDGNSQAV HLEGELHARG+AGTVGGEEA RGANREEER+HGRSLPSGGWARGRSEGGGKEEAGL CARRRSVPQALSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEEFVRHCTERVAVRVERLERA XXXXXXXXXXXEAAGATDRKSADTLKRVVKGISSILLDRLGV MPTCLDGGEDVGERG+ +
Sbjct: 286 KERLSTEVERLRGDNGHLRKGIAVAEARGSELELRLQAALKSKETDATAAAAREEALRATAEQARTRADTMSQSLAEAIREQSGLLTETANAKVAAEVLEAKSRAAEVE----------------------------------NMLAEKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGYLKSSRQELGELRHLAWKLEQMGRNSFAHMDGNSQAVSHLEGELHARGVAGTVGGEEARRGANREEERKHGRSLPSGGWARGRSEGGGKEEAGLLCARRRSVPQALSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEEFVRHCTERVAVRVERLERAXXXXXXXXXXXXXXXXXXEAAGATDRKSADTLKRVVKGISSILLDRLGVAMPTCLDGGEDVGERGEGK 664 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1046.438.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1046.438.1 >prot_Ecto-sp9_F_contig1046.438.1 ID=prot_Ecto-sp9_F_contig1046.438.1|Name=mRNA_Ecto-sp9_F_contig1046.438.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=681bp MSQSLAEAVREQSGLLTETANAKVAAEVLEAKSRAAEVEMARAAGRETARback to top mRNA from alignment at Ecto-sp9_F_contig1046:19420..26355- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1046.438.1 ID=mRNA_Ecto-sp9_F_contig1046.438.1|Name=mRNA_Ecto-sp9_F_contig1046.438.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6936bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1046:19420..26355- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1046:19420..26355- >mRNA_Ecto-sp9_F_contig1046.438.1 ID=mRNA_Ecto-sp9_F_contig1046.438.1|Name=mRNA_Ecto-sp9_F_contig1046.438.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=4086bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1046:19420..26355- (Ectocarpus species9 EcSCA_722f female)back to top |