mRNA_Ecto-sp9_F_contig1045.430.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1045.430.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI) HSP 1 Score: 136 bits (343), Expect = 5.110e-36 Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 1
Query: 28 MHLFPKRVPLQGLETDIFKLVSYGATPDQWANWLRVPLEHAAARGNLDLVNILIEAGANGSAGWRGCRGRTLLDTAALGXXXXXXXXXXXXGAKPDVTVVSMA 336
M+++PKR LQG+E++I+KLVSYGATP QW WLRVPLEHAAARGNL+LVN L+EAGA+GSAGWRGC RTL+D AALG GA+PDV VS++
Sbjct: 1 MYVYPKRRLLQGMESEIWKLVSYGATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWRGCLDRTLIDAAALGGSEPVVSALLRAGAQPDVNTVSIS 103
BLAST of mRNA_Ecto-sp9_F_contig1045.430.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW91_9PHAE) HSP 1 Score: 129 bits (324), Expect = 1.730e-35 Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = 1
Query: 10 DYLISKMHLFPKRVPLQGLETDIFKLVSYGATPDQWANWLRVPLEHAAARGNLDLVNILIEAGANGSAGWRGCRGRTLLDTAALGXXXXXXXXXXXXGAKPDVTVVS 330
D+ +K H++PKRV L+GLE +IFKLVSY ATP+QW WL+VPLE AAA GN DL L+EAGA GSAGWRGCR R+L+D AA+G GA+PDV VVS
Sbjct: 38 DHTDTKTHIYPKRVLLEGLEIEIFKLVSYSATPEQWKEWLQVPLERAAALGNRDLFYKLLEAGAYGSAGWRGCRDRSLIDAAAVGGNVDVVSGFLEAGAEPDVQVVS 144
BLAST of mRNA_Ecto-sp9_F_contig1045.430.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI) HSP 1 Score: 134 bits (338), Expect = 2.760e-35 Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 1
Query: 28 MHLFPKRVPLQGLETDIFKLVSYGATPDQWANWLRVPLEHAAARGNLDLVNILIEAGANGSAGWRGCRGRTLLDTAALGXXXXXXXXXXXXGAKPDVTVVSMA 336
MH++P+R QG+ ++I+KLVS+ ATP QW WLRVPLEHAAARGNL+LVN L+EAGA+GSAGW+GCRGRTL+D AALG GA+PDV VVS++
Sbjct: 1 MHVYPERRLFQGMGSEIWKLVSHSATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWKGCRGRTLIDAAALGGSEPVVSALLRAGAQPDVNVVSVS 103
BLAST of mRNA_Ecto-sp9_F_contig1045.430.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE) HSP 1 Score: 133 bits (334), Expect = 2.900e-34 Identity = 64/103 (62.14%), Postives = 74/103 (71.84%), Query Frame = 1
Query: 28 MHLFPKRVPLQGLETDIFKLVSYGATPDQWANWLRVPLEHAAARGNLDLVNILIEAGANGSAGWRGCRGRTLLDTAALGXXXXXXXXXXXXGAKPDVTVVSMA 336
MHL+PKR L+G E +IFKL+ +GATP+QWA WLR PLEHAAARGNL LV L+ AGANG AGWRGCRGRT+LD AALG G DV VVS++
Sbjct: 1 MHLYPKRALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLS 103
BLAST of mRNA_Ecto-sp9_F_contig1045.430.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI) HSP 1 Score: 132 bits (331), Expect = 3.870e-34 Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 1
Query: 28 MHLFPKRVPLQGLETDIFKLVSYGATPDQWANWLRVPLEHAAARGNLDLVNILIEAGANGSAGWRGCRGRTLLDTAALGXXXXXXXXXXXXGAKPDVTVVSMA 336
MH++P+R LQG+E++I+KLVSY ATP QW WLR+PLEHAAARGNL+LV+ L+ AGA+GSAGWRGCRGRTL+D AALG GA+ DV VVS++
Sbjct: 1 MHVYPERRLLQGMESEIWKLVSYSATPQQWKEWLRMPLEHAAARGNLNLVSSLLGAGADGSAGWRGCRGRTLIDAAALGGSEPVVSTLLRAGAQWDVNVVSVS 103
BLAST of mRNA_Ecto-sp9_F_contig1045.430.1 vs.
Match: Similar (to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI) HSP 1 Score: 127 bits (320), Expect = 9.840e-33 Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 1
Query: 28 MHLFPKRVPLQGLETDIFKLVSYGATPDQWANWLRVPLEHAAARGNLDLVNILIEAGANGSAGWRGCRGRTLLDTAALGXXXXXXXXXXXXGAKPDVTVVSMA 336
MHL+PKR L+G E +IFKL+S+ ATP+QWA+WLR PLEHAAARGN+ LV L+EAGA+G AGWRGCRGRT+LD A XXXXXXXXXXX G PDV VVS++
Sbjct: 1 MHLYPKRALLEGAEVEIFKLLSFCATPEQWADWLRAPLEHAAARGNIGLVERLLEAGADGRAGWRGCRGRTMLDAAXXXXXXXXXXXXXXSGCAPDVNVVSVS 103
BLAST of mRNA_Ecto-sp9_F_contig1045.430.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.590e-32 Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 1
Query: 28 MHLFPKRVPLQGLETDIFKLVSYGATPDQWANWLRVPLEHAAARGNLDLVNILIEAGANGSAGWRGCRGRTLLDTAALGXXXXXXXXXXXXGAKPDVTVVSMA 336
MH+FP+R L GL +++FKLVSYGA+ +QWA WLRVPLEHAA+RGN +LV L++AGA+ AGWRGCRGRTLLD AALG GA DV V+++
Sbjct: 1 MHIFPERTSLDGLGSEVFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVERLLQAGADAGAGWRGCRGRTLLDAAALGGNADVMSALIRGGAGADVNKVTVS 103
BLAST of mRNA_Ecto-sp9_F_contig1045.430.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE) HSP 1 Score: 122 bits (306), Expect = 1.950e-30 Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 1
Query: 28 MHLFPKRVPLQGLETDIFKLVSYGATPDQWANWLRVPLEHAAARGNLDLVNILIEAGANGSAGWRGCRGRTLLDTAALGXXXXXXXXXXXXGAKPDVTVVSMA 336
MHL PKR L+ E +IFKL+S+GATP++WA WLR P EHAAARGN+ LV L+EAGA+G AGWRGCR RT+LD AALG PDV VVS++
Sbjct: 1 MHLDPKRALLEEAELEIFKLLSFGATPERWAEWLRAPQEHAAARGNIGLVERLLEAGADGGAGWRGCRSRTMLDAAALGGNADVVTKLLRSECVPDVNVVSVS 103
BLAST of mRNA_Ecto-sp9_F_contig1045.430.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 119 bits (297), Expect = 3.790e-29 Identity = 58/101 (57.43%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 34 LFPKRVPLQGLETDIFKLVSYGATPDQWANWLRVPLEHAAARGNLDLVNILIEAGANGSAGWRGCRGRTLLDTAALGXXXXXXXXXXXXGAKPDVTVVSMA 336
++P+R L+G E IF L+SYGATP+QW WLR PLEHAAARG LV L+ AGA+G AGW GCRGRTLLD AALG G PDV VVS++
Sbjct: 1 MYPRRPVLEGAEVGIFTLLSYGATPEQWREWLRAPLEHAAARGEFVLVEKLLNAGADGGAGWSGCRGRTLLDAAALGGNPDVVTTLLRAGCLPDVNVVSVS 101
BLAST of mRNA_Ecto-sp9_F_contig1045.430.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI) HSP 1 Score: 113 bits (283), Expect = 3.150e-27 Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 61 GLETDIFKLVSYGATPDQWANWLRVPLEHAAARGNLDLVNILIEAGANGSAGWRGCRGRTLLDTAALGXXXXXXXXXXXXGAKPDVTVVS 330
G E +IFK+VS GATP+QWA WLR PLEHAAA GNL+LV+ L++AG +G AGWRGCRGR+LLD AALG G PDV VV+
Sbjct: 10 GEEVEIFKIVSEGATPEQWARWLRAPLEHAAASGNLNLVDRLLKAGVDGKAGWRGCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVA 99 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1045.430.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1045.430.1 >prot_Ecto-sp9_F_contig1045.430.1 ID=prot_Ecto-sp9_F_contig1045.430.1|Name=mRNA_Ecto-sp9_F_contig1045.430.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=104bp MHLFPKRVPLQGLETDIFKLVSYGATPDQWANWLRVPLEHAAARGNLDLVback to top mRNA from alignment at Ecto-sp9_F_contig1045:25385..25723+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1045.430.1 ID=mRNA_Ecto-sp9_F_contig1045.430.1|Name=mRNA_Ecto-sp9_F_contig1045.430.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=339bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1045:25385..25723+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1045:25385..25723+ >mRNA_Ecto-sp9_F_contig1045.430.1 ID=mRNA_Ecto-sp9_F_contig1045.430.1|Name=mRNA_Ecto-sp9_F_contig1045.430.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1045:25385..25723+ (Ectocarpus species9 EcSCA_722f female)back to top |