mRNA_Ecto-sp9_F_contig1045.428.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1045.428.1
Unique NamemRNA_Ecto-sp9_F_contig1045.428.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1045.428.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1045contigEcto-sp9_F_contig1045:10373..11716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.410632-CDS-Ecto-sp9_F_contig1045:10372..104681622928254.410632-CDS-Ecto-sp9_F_contig1045:10372..10468Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 10373..10468 +
1692277810.5250773-CDS-Ecto-sp9_F_contig1045:10372..104681692277810.5250773-CDS-Ecto-sp9_F_contig1045:10372..10468Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 10373..10468 +
1622928254.4241426-CDS-Ecto-sp9_F_contig1045:11496..117151622928254.4241426-CDS-Ecto-sp9_F_contig1045:11496..11715Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 11497..11715 +
1692277810.5333824-CDS-Ecto-sp9_F_contig1045:11496..117151692277810.5333824-CDS-Ecto-sp9_F_contig1045:11496..11715Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 11497..11715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1045.428.1prot_Ecto-sp9_F_contig1045.428.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1045 10373..11715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1045.428.1

>prot_Ecto-sp9_F_contig1045.428.1 ID=prot_Ecto-sp9_F_contig1045.428.1|Name=mRNA_Ecto-sp9_F_contig1045.428.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=105bp
RRAQPRRDAAEVYRETWRPTAFYLMQWSFSNKKKKGSGKARGQHNPGGEE
NTFKTVLNDDSDRDRRKKGKGEQQSLSQQPSSSSSRSVTSPAANGGTTRS
QGARG
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mRNA from alignment at Ecto-sp9_F_contig1045:10373..11716+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1045.428.1 ID=mRNA_Ecto-sp9_F_contig1045.428.1|Name=mRNA_Ecto-sp9_F_contig1045.428.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1344bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1045:10373..11716+ (Ectocarpus species9 EcSCA_722f female)
CGCAGAGCACAGCCCCGCAGAGACGCAGCTGAGGTTTATCGCGAAACCTG
GAGACCCACCGCCTTCTACCTGATGCAGTGGTCATTTTCTAACAAAGTGA
GATGATTTCATTCCGTGTTTCGTGCTCGTATTTCACATTCCCTCCAAGCT
GCATGCAATGTTGGTCGAAAGGTGCCGGTGTACACAGTACGTCCTGTAAT
AGTTTCTACAGCAGTAGTTTCAAGTGTTCGACAGCAGTAGCATCCCGTGA
TCGATGACGATGACGGCCGGTGTGTGAGCTAGCTCCTTCGCTGTTAGGCC
TGCACTACTACTTATCTCCACTCTGAAGTGGCTAGAGGTAGTCAAATCCG
CTCGGTATTCTTTGAGCTGGGGCTCCCCCTCGACTACGGTACAAGAAAGT
AACGCCAGCCGTACCCTTTCGAGACAGCTAATGCACCACATGTGTTGAAG
TCTTAACTAAGTGAGTTTTGAGCACACCAGCTGGATGTTGACTTATTTGA
AGAGTCTGTTGAAACCAATCCAATGAGATGTCGGTGAGGTCTTTTTGTTT
CTGTTTCGTAGGGGTCTAGCTGGATGCAGTATTTCGGAGCATGGGCATCT
ACTGCGGTACGACGACGCTGCACACCCCCATCCCACACCTTTGTTTTTTA
TTTTTGTAGCGGAACCCTAGAGTACATACCGTATGGGGTAAAAATGCATC
GGTTCGAGACACAGGCAACTCTGCTGTAGTGGGCCCTCAATATGGCCGGC
TGAATAGCCCCGGTGAAATTGCTGAACACGGGCTGAATCACCTAAATAGT
CATTCTGTACTTTGAAGTAGCGCCGGTCCCTCGGAACACAACAGCGCCGG
TCGAGTAACGGCGTTATTGAGGCCCCTCCACTGCTGTATATCATGTGCCC
ATCTTGGCGCGGAAGTTCCAAATGCCAGCGAGTATCGGGCCTTCGCATCG
CTTGAAAGCAGATGATGATGGACGATTTTGTTGTGCAATCATATGCTGAC
AGACAGAAAAAAACACGAAAAAAGAAAACACGGTCGGCCAACAAGCAAAT
ACACTGGCATCACCTTTCGCTCTTAATAGTCAACACTCCCCTCCCCGGTG
CTCATTGAACGAAACACGCCGCAGAAGAAGAAGGGGTCTGGAAAGGCCAG
AGGCCAACACAACCCCGGAGGCGAGGAGAACACCTTCAAAACCGTCTTGA
ACGATGATTCGGACCGAGACCGTCGAAAGAAAGGCAAGGGCGAACAACAA
TCCTTGTCACAGCAGCCGTCGTCATCATCTTCGCGCTCGGTGACGTCGCC
GGCGGCGAACGGCGGCACGACTCGCAGCCAGGGCGCGCGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1045:10373..11716+

>mRNA_Ecto-sp9_F_contig1045.428.1 ID=mRNA_Ecto-sp9_F_contig1045.428.1|Name=mRNA_Ecto-sp9_F_contig1045.428.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1045:10373..11716+ (Ectocarpus species9 EcSCA_722f female)
CGCAGAGCACAGCCCCGCAGAGACGCAGCTGAGGTTTATCGCGAAACCTG
GAGACCCACCGCCTTCTACCTGATGCAGTGGTCATTTTCTAACAAACGCA
GAGCACAGCCCCGCAGAGACGCAGCTGAGGTTTATCGCGAAACCTGGAGA
CCCACCGCCTTCTACCTGATGCAGTGGTCATTTTCTAACAAAAAGAAGAA
GGGGTCTGGAAAGGCCAGAGGCCAACACAACCCCGGAGGCGAGGAGAACA
CCTTCAAAACCGTCTTGAACGATGATTCGGACCGAGACCGTCGAAAGAAA
GGCAAGGGCGAACAACAATCCTTGTCACAGCAGCCGTCGTCATCATCTTC
GCGCTCGGTGACGTCGCCGGCGGCGAACGGCGGCACGACTCGCAGCCAGG
GCGCGCGGGGGAAGAAGAAGGGGTCTGGAAAGGCCAGAGGCCAACACAAC
CCCGGAGGCGAGGAGAACACCTTCAAAACCGTCTTGAACGATGATTCGGA
CCGAGACCGTCGAAAGAAAGGCAAGGGCGAACAACAATCCTTGTCACAGC
AGCCGTCGTCATCATCTTCGCGCTCGGTGACGTCGCCGGCGGCGAACGGC
GGCACGACTCGCAGCCAGGGCGCGCGGGGG
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