mRNA_Ecto-sp9_F_contig1043.415.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1043.415.1
Unique NamemRNA_Ecto-sp9_F_contig1043.415.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 501 bits (1291), Expect = 6.590e-174
Identity = 296/361 (81.99%), Postives = 300/361 (83.10%), Query Frame = 1
Query:    4 RTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTNNPHCSPDEVDRARLLLVRAPADRRWRRRGWLVVLRSRTI 1086
            RTLLDAA                AGADVNK+TVSSRRSALYTATCCGHEAAAKRLILA                                          DCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTA+LFSDRAGPAVHMLV+A ADTELKSVGGWTPLHAAA HHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRT+NPHCSPDEVDRARLLLVRAP DRRWRRRGWLVVLRSRTI
Sbjct:   70 RTLLDAAXXXXXXXXXXXXXXXXAGADVNKVTVSSRRSALYTATCCGHEAAAKRLILAGSDVNFRDPVAKCSVLSQAIQGSHTQFVDDLLIGGARPNIRDDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTAILFSDRAGPAVHMLVKARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSRTI 430          
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 9.230e-89
Identity = 167/277 (60.29%), Postives = 182/277 (65.70%), Query Frame = 1
Query:    1 GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNV----GLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDAT 819
            GRTLLDAAALGGNADVMSALIRGGAGADVNK+TVSSRRSAL+TATCCGHEAAAKRL+L                                            C +  L  A   +   +V+ L +  A  N+    GLGKT Y T  MLAVRRGHLAIVETLLEAGADCSLRQ  DYS                       VDAQDRAGCTALHTA+LFSDRAGPAVHML++AGA+TELK+ GGWTPLHAAAVHHRVNC+AALLQNNASVRNRFDAT
Sbjct:   69 GRTLLDAAALGGNADVMSALIRGGAGADVNKVTVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRDPVAK-------------------------------CSV--LSQAIQGSHTQLVNDLPIGGARPNIRDDCGLGKTTYVTTFMLAVRRGHLAIVETLLEAGADCSLRQWADYSPLDVAAEHRALPILEAILGRGVDVDAQDRAGCTALHTAVLFSDRAGPAVHMLIEAGANTELKNGGGWTPLHAAAVHHRVNCMAALLQNNASVRNRFDAT 312          
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 4.910e-48
Identity = 141/389 (36.25%), Postives = 181/389 (46.53%), Query Frame = 1
Query:    1 GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLED----YSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKS---VGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVL----------------------GATRTNNPHCSPDEVDRARLLLVRAPADRRWRRRGWLVVLRSR 1080
            GRT+LDAAALGGN DV++ L+  G  +DVN +++SSRRSAL+ A+ CGHEAAAK+LI+A                                            G  PL  AA      VVS LL   A  +V    +   +PLM+A   GH + VE LL AGAD +LR         +                       V A D  G TALH A     R   AV +L+ AGAD   K+   + G+TPL    + +    V ALL+   +V N  +  G + LH  C     G+   +DLLLRWGA ETA NK G TP D+L                      G + T +   +  E+ RAR+LL RAPADR WRRR WLV+LR+R
Sbjct:   69 GRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLL-GNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHA-----RGAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNV-NDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTK-EIQRARVLLARAPADRTWRRRCWLVMLRAR 449          
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.110e-46
Identity = 188/363 (51.79%), Postives = 229/363 (63.09%), Query Frame = 1
Query:    1 GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALL-LAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHR-VNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTNNPHCSPDEVDRARLLLVRAPADRRWRRRGWLVVLRSRT 1083
            GRTLLDAAALGGN DV++ L+R G   DVN ++VSSRRSAL+ +  CGHEAAA++LILA          XXXXXXXXXXXXXXXXXXXXXXXXXXX       G  PL  AA   ++ VV+ L  +   D ++ L K+   +PL +A +RGHL+ V+TLL AGAD S+R     SXXXXXXXXXXXXXXXXXXXXXXXV+A  + G TALH     + +AG A+ +L+ AGAD + K  G  TPL  A      V  V  LL+    V    D T    LH AC+    G  A +DLLLRWG  E   +K G TP  +L     ++      EV+RA +LL  APADR WRRR WLV+LR+RT
Sbjct:   67 GRTLLDAAALGGNPDVVTTLLRAGCLPDVNVVSVSSRRSALHLSAVCGHEAAARKLILAGADANRVDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXPNARDLLGRTPLHRAAYMGQDMVVAVLTDMPSTDKDI-LDKSGL-SPLTVASQRGHLSTVKTLLNAGADVSMRTGHRNSXXXXXXXXXXXXXXXXXXXXXXXVNAS-KHGYTALHAGCAMN-QAG-AMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMDKT---MLHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSR-KAREVERAHVLLANAPADRAWRRRSWLVMLRART 420          
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 3.910e-33
Identity = 130/390 (33.33%), Postives = 178/390 (45.64%), Query Frame = 1
Query:    1 GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTM-YETPLMLAVRRG------------------HLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKS--VGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAA--SIDLLLRWGADETARNKRGRTPLDVLGATRTNNPHCSP------DEVDRARLLLVRAPADRRWRRRGWLVVLRSRT 1083
            GR+LLDAAALGGNA VMSAL++ G G DVN +  S+ RSALY +    HEAAA++LILA                                               PL AA     + +V  LL+A A+ NV +  +  + TPL  A ++G                  H+A V+ LL AGAD  +R L+ +S                       V+  +      LH A  F+      + +L+ AGAD ++K   + G T LH AA       + ALL+  A+V    D  G T LH   V + EG A   ++D+LLR GA E A ++ G+ P+D+    +       P       E++RA  LL RAPADR WRRR WL++LR RT
Sbjct:   67 GRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALYQSVLGKHEAAARKLILAGADVNFVDRADKA---------------------------------GPLFAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTDKNGHVATVKVLLAAGADTDIRDLDSHSALVFAAQYERIDVMKALLEHGVDVNVGEDHW-NPLHWAAQFNSTG--CITVLLDAGADIDVKCSFLDGRTSLHFAAETGNNEALLALLRRGANVHQTTD-DGSTALH--LVSEMEGHAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPELERAIELLARAPADRTWRRRCWLIMLRERT 417          
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Similar (to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 5.040e-33
Identity = 122/370 (32.97%), Postives = 155/370 (41.89%), Query Frame = 1
Query:    1 GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLA-ASIDLLLRWGADETARNKRGRTPLDVL--GATRTNNPHCSPD-------EVDRARLLLVRAPADRRWRRRGWLVVLRSR 1080
            GRT+LDAA               G   DVN ++VSS+RSAL+ A  CGHEAAA+ L++A                                            G  PL  AA      VVS LL      ++        +PLMLA   GH + VE LL AGAD +LR    YS                       + A + AG              G  V +             GG  PLHA+AVH     + ALL+   +   + D  G + LH AC+    G    ++DLLLRWGA ETA + RG TP D L  GA    + + +P        E+ RA +LL RAPADR WRRR WLV+LR+R
Sbjct:   69 GRTMLDAAXXXXXXXXXXXXXXSGCAPDVNVVSVSSKRSALHLAVVCGHEAAARTLMIAGANIRRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACPNSRTRFGRTPLHVAAAVGNSRVVSTLL-GDTSTSINARDNDLHSPLMLASANGHRSTVEALLRAGADTTLRC---YSGGVSD------------------MAALEMAG--------------GEVVDVXXXXXXXXXXXXAGGSIPLHASAVHGHDETMVALLKREGNFDEQ-DNAGRSALHWACIGCLSGTGRTAVDLLLRWGASETALDTRGETPSDYLRRGAAAVASSNVTPRNSEKMQREMQRALVLLARAPADRAWRRRCWLVMLRAR 401          
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.660e-30
Identity = 131/361 (36.29%), Postives = 164/361 (45.43%), Query Frame = 1
Query:    4 RTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSL-RQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTNNPH--CSPDEVDRARLLLVRAPADRRWRRRGWLVVLRS 1077
            RTL+DAAALGG+  V+SAL+R GA  DVN +++SS+RSALYTAT CGHE AA+ L                                                            + +VSALLL  A  +     T   TPL+ A   GHL++V TLL AGAD  + R ++ YS       XXXXXXXXXXXXXXXX +A D AG T LH A   + +  P                                                 D  G+TPLHRAC  + +G+ A++DLLLR            +TP+D+L      N    CS  E +R RLLL RAPA+R WR R WLV+LRS
Sbjct:   70 RTLIDAAALGGSEPVVSALLRAGAQPDVNTVSISSKRSALYTATVCGHEHAARGL------------------------------------------------------------DRIVSALLLRGAYTDAQ--DTSGATPLIYACGSGHLSVVNTLLAAGADVDIIRDVDSYSALDKAVCXXXXXXXXXXXXXXXXXNACDDAGFTPLHLA---AQKDQPGAIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDTDGNTPLHRACYWRDKGMEATVDLLLRXXXXXXXXXXXXQTPVDMLDEHDDENDGTTCSEAEFERVRLLLARAPANRAWRHRCWLVMLRS 365          
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.810e-29
Identity = 120/373 (32.17%), Postives = 156/373 (41.82%), Query Frame = 1
Query:    4 RTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYE--TPLMLAVRRGHLAIVETLLEAGADCSLRQLE--DYSXXXXXXXXXXXXXXXXXXXXXXX---VDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLD--VLGATRTNNPHCSP-----DEVDRARLLLVRAPADRRWRRRGWLVVLRSR 1080
            RT+LDAAALGGNADV++ L+R     DVN ++VSS+RSAL+ A    HEAAA+ L++A                                            G  PL  A        VSALL    D N  +     +  +PLMLA R GH + VE LL AGAD + R  +  D+S                            A D  GCTALH A L     G  V +                              +  L++   +V N   + G + LH AC   R G+  ++ LLLRW A   A + RG TP +   L A        +P     +E+ RA +LL RAPADR WRRR WL +LR+R
Sbjct:   70 RTMLDAAALGGNADVVTKLLRSECVPDVNVVSVSSKRSALHLAVTWSHEAAARTLMIAGADNHRVDPVNRYTPFHVAAEGGHDDLVDNYLTGGACPNSRSRVGRTPLHLADGLGNNRDVSALL---GDANTHMDALDNDGFSPLMLASRNGHRSTVEVLLRAGADTTRRATDSGDFSHMAALDVAAAQGHVRVVKAILGNGGDASAVDDHGCTALHYAALHK-HGGEVVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXDEAMVTLVKRGGNV-NENTSNGVSVLHWACAIPRPGVDRAVGLLLRWEAFAAALDSRGETPSNHLELAAALFAGTSAAPRNSVREEIQRALVLLARAPADRTWRRRCWLAMLRAR 437          
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.470e-28
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 1
Query:  907 ETARNKRGRTPLDVLGATRTNNPHCSPDEVDRARLLLVRAPADRRWRRRGWLVVLRSRTI 1086
            ET RNKRGRTPLDV+GATRT+NPHCSPDEVDRA LLLVRAPADRRWRR+GWLVVLRSRTI
Sbjct:    4 ETVRNKRGRTPLDVVGATRTDNPHCSPDEVDRAWLLLVRAPADRRWRRQGWLVVLRSRTI 63          
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.500e-27
Identity = 83/221 (37.56%), Postives = 112/221 (50.68%), Query Frame = 1
Query:  433 LAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGW----TPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTNNPHCSPDEVDRARLLLVRAPADRRWRRRGWLVVLRSRT 1083
            +A + GH+ +++  LE G D S +                               A   +G TALH A L  D    AV +L++AGAD +++S+ G     TPL AAA       +  LL+N A   N+ D  G  PLH A  EQ  G+   +DLLLRWGA ETA NK G TP +V      + P  + +    A +LL RAPADR WRRRGW+V+LR+R+
Sbjct:  173 VATQLGHVGVIKAFLEHGVDASSQ-------------------------------ACPASGWTALHQAAL--DNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADP-NKPDDNGSMPLHLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAG-ALVLLARAPADRAWRRRGWVVMLRARS 358          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ankyrin6.590e-17481.99repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized9.230e-8960.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.910e-4836.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Similar2.110e-4651.79to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosu... [more]
Uncharacterized3.910e-3333.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Similar5.040e-3332.97to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus s... [more]
Ankyrin2.660e-3036.29repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized1.810e-2932.17protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.470e-2891.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Similar2.500e-2737.56to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1043contigEcto-sp9_F_contig1043:12463..13548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score504.2
Seed ortholog evalue5e-140
Seed eggNOG ortholog2880.D7FLL7
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1086
Cds size1086
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928252.726527-CDS-Ecto-sp9_F_contig1043:12462..135481622928252.726527-CDS-Ecto-sp9_F_contig1043:12462..13548Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 12463..13548 -
1692277809.8889685-CDS-Ecto-sp9_F_contig1043:12462..135481692277809.8889685-CDS-Ecto-sp9_F_contig1043:12462..13548Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 12463..13548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1043.415.1prot_Ecto-sp9_F_contig1043.415.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1043 12463..13548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1043.415.1

>prot_Ecto-sp9_F_contig1043.415.1 ID=prot_Ecto-sp9_F_contig1043.415.1|Name=mRNA_Ecto-sp9_F_contig1043.415.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=362bp
GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHE
AAAKRLILAGADVNFRDPVEKCSVLSQAIQGSHTQLVNDLLIGGARPNIR
DDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRG
HLAIVETLLEAGADCSLRQLEDYSPLDVAAERGTLPVLEAILGRGVDVDA
QDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVH
HRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWG
ADETARNKRGRTPLDVLGATRTNNPHCSPDEVDRARLLLVRAPADRRWRR
RGWLVVLRSRTI
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mRNA from alignment at Ecto-sp9_F_contig1043:12463..13548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1043.415.1 ID=mRNA_Ecto-sp9_F_contig1043.415.1|Name=mRNA_Ecto-sp9_F_contig1043.415.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1086bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1043:12463..13548- (Ectocarpus species9 EcSCA_722f female)
GGCCGTACCCTGCTCGATGCCGCTGCACTCGGTGGGAATGCTGACGTCAT GTCAGCCTTGATTCGAGGAGGGGCAGGGGCGGATGTAAACAAGATGACGG TGTCGTCCCGGAGATCGGCGCTGTATACCGCGACGTGTTGTGGTCATGAA GCTGCTGCGAAACGGTTGATCCTCGCTGGAGCAGACGTCAACTTTCGGGA CCCCGTGGAAAAGTGCAGCGTTCTGAGCCAGGCCATTCAAGGCAGTCACA CACAGCTCGTCAATGACCTGCTGATAGGTGGGGCACGCCCAAACATCCGA GACGATTGCGGTATGGCCCCTCTCCAAGCGGCGGCTCTGTTTGCAGAAGA GGGCGTCGTCTCAGCTCTTCTTTTGGCGAAGGCAGACGTAAACGTAGGCC TTGGCAAGACGATGTACGAGACACCGCTGATGCTTGCTGTGAGACGGGGC CATCTAGCAATCGTAGAGACGCTGTTGGAGGCCGGGGCTGACTGCAGCCT TCGCCAATTGGAGGACTATTCGCCGCTTGACGTGGCCGCTGAGCGGGGGA CACTCCCTGTCCTCGAAGCCATCCTGGGGCGGGGAGTTGACGTGGATGCC CAAGACCGTGCAGGTTGCACTGCCTTGCACACAGCTCTCCTTTTTAGCGA CCGGGCGGGGCCTGCGGTCCACATGCTAGTCCAAGCCGGGGCAGACACCG AGCTCAAGAGCGTTGGTGGCTGGACACCTCTTCATGCCGCCGCGGTACAC CACCGGGTAAACTGCGTGGCAGCCCTGTTGCAGAACAACGCGTCCGTCAG GAACCGATTCGACGCCACCGGAGACACACCGTTGCACAGGGCTTGTGTTG AACAGCGGGAGGGCCTGGCGGCTTCCATAGATCTGCTGCTGAGATGGGGA GCGGACGAGACCGCGCGGAACAAACGTGGGCGTACCCCCCTCGACGTTCT CGGTGCGACCCGAACCAACAACCCTCATTGCTCGCCCGACGAGGTGGACC GCGCTCGGCTGCTACTGGTTCGGGCCCCAGCGGACAGGCGGTGGCGCCGC CGGGGCTGGCTGGTGGTTCTCCGATCACGCACCATC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1043:12463..13548-

>mRNA_Ecto-sp9_F_contig1043.415.1 ID=mRNA_Ecto-sp9_F_contig1043.415.1|Name=mRNA_Ecto-sp9_F_contig1043.415.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2172bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1043:12463..13548- (Ectocarpus species9 EcSCA_722f female)
GGCCGTACCCTGCTCGATGCCGCTGCACTCGGTGGGAATGCTGACGTCAT
GTCAGCCTTGATTCGAGGAGGGGCAGGGGCGGATGTAAACAAGATGACGG
TGTCGTCCCGGAGATCGGCGCTGTATACCGCGACGTGTTGTGGTCATGAA
GCTGCTGCGAAACGGTTGATCCTCGCTGGAGCAGACGTCAACTTTCGGGA
CCCCGTGGAAAAGTGCAGCGTTCTGAGCCAGGCCATTCAAGGCAGTCACA
CACAGCTCGTCAATGACCTGCTGATAGGTGGGGCACGCCCAAACATCCGA
GACGATTGCGGTATGGCCCCTCTCCAAGCGGCGGCTCTGTTTGCAGAAGA
GGGCGTCGTCTCAGCTCTTCTTTTGGCGAAGGCAGACGTAAACGTAGGCC
TTGGCAAGACGATGTACGAGACACCGCTGATGCTTGCTGTGAGACGGGGC
CATCTAGCAATCGTAGAGACGCTGTTGGAGGCCGGGGCTGACTGCAGCCT
TCGCCAATTGGAGGACTATTCGCCGCTTGACGTGGCCGCTGAGCGGGGGA
CACTCCCTGTCCTCGAAGCCATCCTGGGGCGGGGAGTTGACGTGGATGCC
CAAGACCGTGCAGGTTGCACTGCCTTGCACACAGCTCTCCTTTTTAGCGA
CCGGGCGGGGCCTGCGGTCCACATGCTAGTCCAAGCCGGGGCAGACACCG
AGCTCAAGAGCGTTGGTGGCTGGACACCTCTTCATGCCGCCGCGGTACAC
CACCGGGTAAACTGCGTGGCAGCCCTGTTGCAGAACAACGCGTCCGTCAG
GAACCGATTCGACGCCACCGGAGACACACCGTTGCACAGGGCTTGTGTTG
AACAGCGGGAGGGCCTGGCGGCTTCCATAGATCTGCTGCTGAGATGGGGA
GCGGACGAGACCGCGCGGAACAAACGTGGGCGTACCCCCCTCGACGTTCT
CGGTGCGACCCGAACCAACAACCCTCATTGCTCGCCCGACGAGGTGGACC
GCGCTCGGCTGCTACTGGTTCGGGCCCCAGCGGACAGGCGGTGGCGCCGC
CGGGGCTGGCTGGTGGTTCTCCGATCACGCACCATCGGCCGTACCCTGCT
CGATGCCGCTGCACTCGGTGGGAATGCTGACGTCATGTCAGCCTTGATTC
GAGGAGGGGCAGGGGCGGATGTAAACAAGATGACGGTGTCGTCCCGGAGA
TCGGCGCTGTATACCGCGACGTGTTGTGGTCATGAAGCTGCTGCGAAACG
GTTGATCCTCGCTGGAGCAGACGTCAACTTTCGGGACCCCGTGGAAAAGT
GCAGCGTTCTGAGCCAGGCCATTCAAGGCAGTCACACACAGCTCGTCAAT
GACCTGCTGATAGGTGGGGCACGCCCAAACATCCGAGACGATTGCGGTAT
GGCCCCTCTCCAAGCGGCGGCTCTGTTTGCAGAAGAGGGCGTCGTCTCAG
CTCTTCTTTTGGCGAAGGCAGACGTAAACGTAGGCCTTGGCAAGACGATG
TACGAGACACCGCTGATGCTTGCTGTGAGACGGGGCCATCTAGCAATCGT
AGAGACGCTGTTGGAGGCCGGGGCTGACTGCAGCCTTCGCCAATTGGAGG
ACTATTCGCCGCTTGACGTGGCCGCTGAGCGGGGGACACTCCCTGTCCTC
GAAGCCATCCTGGGGCGGGGAGTTGACGTGGATGCCCAAGACCGTGCAGG
TTGCACTGCCTTGCACACAGCTCTCCTTTTTAGCGACCGGGCGGGGCCTG
CGGTCCACATGCTAGTCCAAGCCGGGGCAGACACCGAGCTCAAGAGCGTT
GGTGGCTGGACACCTCTTCATGCCGCCGCGGTACACCACCGGGTAAACTG
CGTGGCAGCCCTGTTGCAGAACAACGCGTCCGTCAGGAACCGATTCGACG
CCACCGGAGACACACCGTTGCACAGGGCTTGTGTTGAACAGCGGGAGGGC
CTGGCGGCTTCCATAGATCTGCTGCTGAGATGGGGAGCGGACGAGACCGC
GCGGAACAAACGTGGGCGTACCCCCCTCGACGTTCTCGGTGCGACCCGAA
CCAACAACCCTCATTGCTCGCCCGACGAGGTGGACCGCGCTCGGCTGCTA
CTGGTTCGGGCCCCAGCGGACAGGCGGTGGCGCCGCCGGGGCTGGCTGGT
GGTTCTCCGATCACGCACCATC
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