mRNA_Ecto-sp9_F_contig1043.415.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI) HSP 1 Score: 501 bits (1291), Expect = 6.590e-174 Identity = 296/361 (81.99%), Postives = 300/361 (83.10%), Query Frame = 1
Query: 4 RTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTNNPHCSPDEVDRARLLLVRAPADRRWRRRGWLVVLRSRTI 1086
RTLLDAA AGADVNK+TVSSRRSALYTATCCGHEAAAKRLILA DCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTA+LFSDRAGPAVHMLV+A ADTELKSVGGWTPLHAAA HHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRT+NPHCSPDEVDRARLLLVRAP DRRWRRRGWLVVLRSRTI
Sbjct: 70 RTLLDAAXXXXXXXXXXXXXXXXAGADVNKVTVSSRRSALYTATCCGHEAAAKRLILAGSDVNFRDPVAKCSVLSQAIQGSHTQFVDDLLIGGARPNIRDDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTAILFSDRAGPAVHMLVKARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSRTI 430
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE) HSP 1 Score: 278 bits (712), Expect = 9.230e-89 Identity = 167/277 (60.29%), Postives = 182/277 (65.70%), Query Frame = 1
Query: 1 GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNV----GLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDAT 819
GRTLLDAAALGGNADVMSALIRGGAGADVNK+TVSSRRSAL+TATCCGHEAAAKRL+L C + L A + +V+ L + A N+ GLGKT Y T MLAVRRGHLAIVETLLEAGADCSLRQ DYS VDAQDRAGCTALHTA+LFSDRAGPAVHML++AGA+TELK+ GGWTPLHAAAVHHRVNC+AALLQNNASVRNRFDAT
Sbjct: 69 GRTLLDAAALGGNADVMSALIRGGAGADVNKVTVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRDPVAK-------------------------------CSV--LSQAIQGSHTQLVNDLPIGGARPNIRDDCGLGKTTYVTTFMLAVRRGHLAIVETLLEAGADCSLRQWADYSPLDVAAEHRALPILEAILGRGVDVDAQDRAGCTALHTAVLFSDRAGPAVHMLIEAGANTELKNGGGWTPLHAAAVHHRVNCMAALLQNNASVRNRFDAT 312
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE) HSP 1 Score: 179 bits (455), Expect = 4.910e-48 Identity = 141/389 (36.25%), Postives = 181/389 (46.53%), Query Frame = 1
Query: 1 GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLED----YSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKS---VGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVL----------------------GATRTNNPHCSPDEVDRARLLLVRAPADRRWRRRGWLVVLRSR 1080
GRT+LDAAALGGN DV++ L+ G +DVN +++SSRRSAL+ A+ CGHEAAAK+LI+A G PL AA VVS LL A +V + +PLM+A GH + VE LL AGAD +LR + V A D G TALH A R AV +L+ AGAD K+ + G+TPL + + V ALL+ +V N + G + LH C G+ +DLLLRWGA ETA NK G TP D+L G + T + + E+ RAR+LL RAPADR WRRR WLV+LR+R
Sbjct: 69 GRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLL-GNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHA-----RGAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNV-NDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTK-EIQRARVLLARAPADRTWRRRCWLVMLRAR 449
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 174 bits (442), Expect = 2.110e-46 Identity = 188/363 (51.79%), Postives = 229/363 (63.09%), Query Frame = 1
Query: 1 GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALL-LAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHR-VNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTNNPHCSPDEVDRARLLLVRAPADRRWRRRGWLVVLRSRT 1083
GRTLLDAAALGGN DV++ L+R G DVN ++VSSRRSAL+ + CGHEAAA++LILA XXXXXXXXXXXXXXXXXXXXXXXXXXX G PL AA ++ VV+ L + D ++ L K+ +PL +A +RGHL+ V+TLL AGAD S+R SXXXXXXXXXXXXXXXXXXXXXXXV+A + G TALH + +AG A+ +L+ AGAD + K G TPL A V V LL+ V D T LH AC+ G A +DLLLRWG E +K G TP +L ++ EV+RA +LL APADR WRRR WLV+LR+RT
Sbjct: 67 GRTLLDAAALGGNPDVVTTLLRAGCLPDVNVVSVSSRRSALHLSAVCGHEAAARKLILAGADANRVDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXPNARDLLGRTPLHRAAYMGQDMVVAVLTDMPSTDKDI-LDKSGL-SPLTVASQRGHLSTVKTLLNAGADVSMRTGHRNSXXXXXXXXXXXXXXXXXXXXXXXVNAS-KHGYTALHAGCAMN-QAG-AMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMDKT---MLHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSR-KAREVERAHVLLANAPADRAWRRRSWLVMLRART 420
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI) HSP 1 Score: 138 bits (348), Expect = 3.910e-33 Identity = 130/390 (33.33%), Postives = 178/390 (45.64%), Query Frame = 1
Query: 1 GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTM-YETPLMLAVRRG------------------HLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKS--VGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAA--SIDLLLRWGADETARNKRGRTPLDVLGATRTNNPHCSP------DEVDRARLLLVRAPADRRWRRRGWLVVLRSRT 1083
GR+LLDAAALGGNA VMSAL++ G G DVN + S+ RSALY + HEAAA++LILA PL AA + +V LL+A A+ NV + + + TPL A ++G H+A V+ LL AGAD +R L+ +S V+ + LH A F+ + +L+ AGAD ++K + G T LH AA + ALL+ A+V D G T LH V + EG A ++D+LLR GA E A ++ G+ P+D+ + P E++RA LL RAPADR WRRR WL++LR RT
Sbjct: 67 GRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALYQSVLGKHEAAARKLILAGADVNFVDRADKA---------------------------------GPLFAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTDKNGHVATVKVLLAAGADTDIRDLDSHSALVFAAQYERIDVMKALLEHGVDVNVGEDHW-NPLHWAAQFNSTG--CITVLLDAGADIDVKCSFLDGRTSLHFAAETGNNEALLALLRRGANVHQTTD-DGSTALH--LVSEMEGHAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPELERAIELLARAPADRTWRRRCWLIMLRERT 417
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Similar (to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI) HSP 1 Score: 137 bits (345), Expect = 5.040e-33 Identity = 122/370 (32.97%), Postives = 155/370 (41.89%), Query Frame = 1
Query: 1 GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLA-ASIDLLLRWGADETARNKRGRTPLDVL--GATRTNNPHCSPD-------EVDRARLLLVRAPADRRWRRRGWLVVLRSR 1080
GRT+LDAA G DVN ++VSS+RSAL+ A CGHEAAA+ L++A G PL AA VVS LL ++ +PLMLA GH + VE LL AGAD +LR YS + A + AG G V + GG PLHA+AVH + ALL+ + + D G + LH AC+ G ++DLLLRWGA ETA + RG TP D L GA + + +P E+ RA +LL RAPADR WRRR WLV+LR+R
Sbjct: 69 GRTMLDAAXXXXXXXXXXXXXXSGCAPDVNVVSVSSKRSALHLAVVCGHEAAARTLMIAGANIRRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACPNSRTRFGRTPLHVAAAVGNSRVVSTLL-GDTSTSINARDNDLHSPLMLASANGHRSTVEALLRAGADTTLRC---YSGGVSD------------------MAALEMAG--------------GEVVDVXXXXXXXXXXXXAGGSIPLHASAVHGHDETMVALLKREGNFDEQ-DNAGRSALHWACIGCLSGTGRTAVDLLLRWGASETALDTRGETPSDYLRRGAAAVASSNVTPRNSEKMQREMQRALVLLARAPADRAWRRRCWLVMLRAR 401
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI) HSP 1 Score: 130 bits (326), Expect = 2.660e-30 Identity = 131/361 (36.29%), Postives = 164/361 (45.43%), Query Frame = 1
Query: 4 RTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSL-RQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTNNPH--CSPDEVDRARLLLVRAPADRRWRRRGWLVVLRS 1077
RTL+DAAALGG+ V+SAL+R GA DVN +++SS+RSALYTAT CGHE AA+ L + +VSALLL A + T TPL+ A GHL++V TLL AGAD + R ++ YS XXXXXXXXXXXXXXXX +A D AG T LH A + + P D G+TPLHRAC + +G+ A++DLLLR +TP+D+L N CS E +R RLLL RAPA+R WR R WLV+LRS
Sbjct: 70 RTLIDAAALGGSEPVVSALLRAGAQPDVNTVSISSKRSALYTATVCGHEHAARGL------------------------------------------------------------DRIVSALLLRGAYTDAQ--DTSGATPLIYACGSGHLSVVNTLLAAGADVDIIRDVDSYSALDKAVCXXXXXXXXXXXXXXXXXNACDDAGFTPLHLA---AQKDQPGAIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDTDGNTPLHRACYWRDKGMEATVDLLLRXXXXXXXXXXXXQTPVDMLDEHDDENDGTTCSEAEFERVRLLLARAPANRAWRHRCWLVMLRS 365
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.810e-29 Identity = 120/373 (32.17%), Postives = 156/373 (41.82%), Query Frame = 1
Query: 4 RTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEAAAKRLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYE--TPLMLAVRRGHLAIVETLLEAGADCSLRQLE--DYSXXXXXXXXXXXXXXXXXXXXXXX---VDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGWTPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLD--VLGATRTNNPHCSP-----DEVDRARLLLVRAPADRRWRRRGWLVVLRSR 1080
RT+LDAAALGGNADV++ L+R DVN ++VSS+RSAL+ A HEAAA+ L++A G PL A VSALL D N + + +PLMLA R GH + VE LL AGAD + R + D+S A D GCTALH A L G V + + L++ +V N + G + LH AC R G+ ++ LLLRW A A + RG TP + L A +P +E+ RA +LL RAPADR WRRR WL +LR+R
Sbjct: 70 RTMLDAAALGGNADVVTKLLRSECVPDVNVVSVSSKRSALHLAVTWSHEAAARTLMIAGADNHRVDPVNRYTPFHVAAEGGHDDLVDNYLTGGACPNSRSRVGRTPLHLADGLGNNRDVSALL---GDANTHMDALDNDGFSPLMLASRNGHRSTVEVLLRAGADTTRRATDSGDFSHMAALDVAAAQGHVRVVKAILGNGGDASAVDDHGCTALHYAALHK-HGGEVVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXDEAMVTLVKRGGNV-NENTSNGVSVLHWACAIPRPGVDRAVGLLLRWEAFAAALDSRGETPSNHLELAAALFAGTSAAPRNSVREEIQRALVLLARAPADRTWRRRCWLAMLRAR 437
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA1_9PHAE) HSP 1 Score: 115 bits (288), Expect = 5.470e-28 Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 1
Query: 907 ETARNKRGRTPLDVLGATRTNNPHCSPDEVDRARLLLVRAPADRRWRRRGWLVVLRSRTI 1086
ET RNKRGRTPLDV+GATRT+NPHCSPDEVDRA LLLVRAPADRRWRR+GWLVVLRSRTI
Sbjct: 4 ETVRNKRGRTPLDVVGATRTDNPHCSPDEVDRAWLLLVRAPADRRWRRQGWLVVLRSRTI 63
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI) HSP 1 Score: 120 bits (302), Expect = 2.500e-27 Identity = 83/221 (37.56%), Postives = 112/221 (50.68%), Query Frame = 1
Query: 433 LAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTALLFSDRAGPAVHMLVQAGADTELKSVGGW----TPLHAAAVHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTNNPHCSPDEVDRARLLLVRAPADRRWRRRGWLVVLRSRT 1083
+A + GH+ +++ LE G D S + A +G TALH A L D AV +L++AGAD +++S+ G TPL AAA + LL+N A N+ D G PLH A EQ G+ +DLLLRWGA ETA NK G TP +V + P + + A +LL RAPADR WRRRGW+V+LR+R+
Sbjct: 173 VATQLGHVGVIKAFLEHGVDASSQ-------------------------------ACPASGWTALHQAAL--DNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADP-NKPDDNGSMPLHLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAG-ALVLLARAPADRAWRRRGWVVMLRARS 358 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1043.415.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1043.415.1 >prot_Ecto-sp9_F_contig1043.415.1 ID=prot_Ecto-sp9_F_contig1043.415.1|Name=mRNA_Ecto-sp9_F_contig1043.415.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=362bp GRTLLDAAALGGNADVMSALIRGGAGADVNKMTVSSRRSALYTATCCGHEback to top mRNA from alignment at Ecto-sp9_F_contig1043:12463..13548- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1043.415.1 ID=mRNA_Ecto-sp9_F_contig1043.415.1|Name=mRNA_Ecto-sp9_F_contig1043.415.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1086bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1043:12463..13548- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1043:12463..13548- >mRNA_Ecto-sp9_F_contig1043.415.1 ID=mRNA_Ecto-sp9_F_contig1043.415.1|Name=mRNA_Ecto-sp9_F_contig1043.415.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2172bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1043:12463..13548- (Ectocarpus species9 EcSCA_722f female)back to top |