mRNA_Ecto-sp9_F_contig10409.401.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig10409.401.1
Unique Name	mRNA_Ecto-sp9_F_contig10409.401.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTA9_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.070e-33
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query:    1 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR
Sbjct:   71 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 133

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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VL38_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.140e-19
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1

Query:    4 AAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            A A+PGD    ++VVGG  NFL IYN ++TGR+LLSWVPQ QG+ AL+P++ +TDP+LN FR
Sbjct:   73 AMAIPGDGIAEQIVVGGFANFLQIYNFILTGRILLSWVPQAQGIGALQPLFAITDPFLNLFR 134

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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: YggT (family protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLA7_FISSO)

HSP 1 Score: 85.9 bits (211), Expect = 2.150e-19
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1

Query:    4 AAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            A A+PG+    +V VGG  NFLSIYNL+IT R+LLSW PQ QGV AL+PVY +TDP+LN FR
Sbjct:   62 AMAIPGNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQAQGVAALQPVYAITDPFLNLFR 123

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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCS8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.300e-19
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1

Query:    4 AAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            A A+PG     +V VGG  NFLSIYNL+ITGR+LLSW PQ QGV  L+PV+ +TDPYLN FR
Sbjct:   74 AMAIPGYGIAEQVFVGGFANFLSIYNLIITGRILLSWFPQAQGVAVLQPVFAITDPYLNLFR 135

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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGH8_CYCTE)

HSP 1 Score: 83.2 bits (204), Expect = 8.060e-19
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 1

Query:    1 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            +A A+PG+  T ++ VGG  NFLSIYN++IT R+LLSW PQ QG+ AL+P++ +TDP+LN FR
Sbjct:   18 LAMAIPGNGVTEQIFVGGFANFLSIYNIVITARILLSWFPQSQGIGALQPIFAVTDPFLNLFR 80

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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G073_PHATC)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-18
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1

Query:    4 AAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            A A+PG     +V VGG LNFLSIYN++IT R+LLSW PQ QGV  L+PVY +TDPYLN FR
Sbjct:  104 AMAIPGYGVAEQVFVGGFLNFLSIYNIVITARILLSWFPQAQGVALLQPVYAITDPYLNIFR 165

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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MRY2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.720e-18
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1

Query:    1 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            +A A+PG     +V VGG  NFLSIYN +IT R+LLSW PQ QGV AL+PVY +TDPYLN FR
Sbjct:  104 MAMAIPGYGVAEQVFVGGFANFLSIYNFIITARILLSWFPQAQGVGALQPVYAITDPYLNLFR 166

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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z260_TRICV)

HSP 1 Score: 82.4 bits (202), Expect = 3.860e-18
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1

Query:    1 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            +A A+PG     +V VGG  NFL IYN +IT R+LLSW PQ QG+ AL+PVY +TDPYLN FR
Sbjct:   71 LAMAIPGYGVAEQVFVGGFANFLQIYNFIITARILLSWFPQAQGIGALQPVYAITDPYLNLFR 133

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BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Diphthine--ammonia (ligase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAT7_FISSO)

HSP 1 Score: 85.9 bits (211), Expect = 4.340e-18
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1

Query:    4 AAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            A A+PG+    +V VGG  NFLSIYNL+IT R+LLSW PQ QGV AL+PVY +TDP+LN FR
Sbjct:   62 AMAIPGNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQAQGVAALQPVYAITDPFLNLFR 123

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RQ89_THAOC)

HSP 1 Score: 85.9 bits (211), Expect = 4.370e-18
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1

Query:    1 VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEPVYLLTDPYLNAFR 189
            +A A+PG+S   +VVVGG  NF+SIYN +IT R+LLSW PQ QG+ AL+PVY +TDPYLN FR
Sbjct:   69 LAIAIPGNSVAEQVVVGGFGNFISIYNTVITARILLSWFPQAQGIGALQPVYQITDPYLNLFR 131

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10409.401.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	1.070e-33	100.00	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTA9...	[more]
Hypothetical	2.140e-19	59.68	protein n=1 Tax=Grammatophora oceanica TaxID=21045...	[more]
YggT	2.150e-19	64.52	family protein n=1 Tax=Fistulifera solaris TaxID=1...	[more]
Hypothetical	3.300e-19	64.52	protein n=1 Tax=Amphiprora paludosa TaxID=265537 R...	[more]
Hypothetical	8.060e-19	57.14	protein n=1 Tax=Cyclophora tenuis TaxID=216820 Rep...	[more]
Predicted	1.310e-18	64.52	protein n=1 Tax=Phaeodactylum tricornutum (strain ...	[more]
Hypothetical	1.720e-18	63.49	protein n=1 Tax=Helicotheca tamesis TaxID=374047 R...	[more]
Hypothetical	3.860e-18	60.32	protein n=1 Tax=Trieres chinensis TaxID=1514140 Re...	[more]
Diphthine--ammonia	4.340e-18	64.52	ligase n=1 Tax=Fistulifera solaris TaxID=1519565 R...	[more]
Uncharacterized	4.370e-18	63.49	protein n=1 Tax=Thalassiosira oceanica TaxID=15974...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10409	contig	Ecto-sp9_F_contig10409:3033..3958 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	123.6
Seed ortholog evalue	3.2e-26
Seed eggNOG ortholog	2880.D7FTA9
KEGG ko	ko:K02221
EggNOG free text desc.	YGGT family
EggNOG OGs	2S4TK@2759,COG0762@1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko02044
Hectar predicted targeting category	other localisation
Exons	2
Model size	189
Cds size	189
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928249.8844652-CDS-Ecto-sp9_F_contig10409:3032..3098	1622928249.8844652-CDS-Ecto-sp9_F_contig10409:3032..3098	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10409 3033..3098 -
1692277808.9684727-CDS-Ecto-sp9_F_contig10409:3032..3098	1692277808.9684727-CDS-Ecto-sp9_F_contig10409:3032..3098	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10409 3033..3098 -
1622928249.9008083-CDS-Ecto-sp9_F_contig10409:3835..3958	1622928249.9008083-CDS-Ecto-sp9_F_contig10409:3835..3958	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10409 3836..3958 -
1692277808.9772892-CDS-Ecto-sp9_F_contig10409:3835..3958	1692277808.9772892-CDS-Ecto-sp9_F_contig10409:3835..3958	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10409 3836..3958 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10409.401.1	prot_Ecto-sp9_F_contig10409.401.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig10409 3033..3958 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig10409:3033..3958-
coding sequence from alignment at Ecto-sp9_F_contig10409:3033..3958-

protein sequence of mRNA_Ecto-sp9_F_contig10409.401.1

>prot_Ecto-sp9_F_contig10409.401.1 ID=prot_Ecto-sp9_F_contig10409.401.1|Name=mRNA_Ecto-sp9_F_contig10409.401.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=63bp
VAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQLQGVQALEP
VYLLTDPYLNAFR

mRNA from alignment at Ecto-sp9_F_contig10409:3033..3958-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig10409.401.1 ID=mRNA_Ecto-sp9_F_contig10409.401.1|Name=mRNA_Ecto-sp9_F_contig10409.401.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=926bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10409:3033..3958- (Ectocarpus species9 EcSCA_722f female)
GTGGCGGCTGCCCTCCCTGGAGACTCGTTCACCAGCGAAGTGGTCGTCGG
AGGGGTGCTCAACTTCCTCAGCATCTACAACCTGCTCATCACCGGCCGTG
TCCTGCTCTCCTGGGTGCCGCAGGTGTTCTAGTGTTTTATCGTGATGTAT
TTGCTTTTATCGTGTTCGTTCGGGTTCCGTCGTGTTCTAGTGGGTTCTGT
TGGGGTTCTATTGCTAATCTGGTTGTTCTTCAGGGTCCAATCAAGTCCTT
ATCGATCCACAGATCAGCATTTCATTCATGTTTATTTTTTGTTGTTGTCG
ATGTGTACAGCAAGCGCCCGCGCGTAAGGACCTCTAGTTTCGGCCGAGGC
TGGGATTCTGTATTCCTATGGAGGCTTGTGCTGCAAATGGCCTCTATATA
TTTGGTTTTAGTGTAGGGTTCTTTTCAGTGCTCGCAAAGTCGTCCTCGGT
TTCTCACGGTTTGGGTTTTGATACCATAGAGCAAGATGCAGACGAATGTG
GTCTGTGGTCTAACCTAGCGCCGGCACTACAGTTAGTGCTCACGCTTGGG
AGCCTTTTGTTTGGACTGAGGCTCGTTTTTTTGTTTCGCTGTTGAGTACC
CCGACAGCGCCCAAGTAGGTTTTTAGGCTACTTGACTGAGCGCCTGTTTT
TTGAAGTTCTTAGCTCCCGGGGTACGTGTTCTAAATGTATCACCTCTTTG
CGCCCCCCCGTCTCCCCACCCTCCCGATGTATCTCCTCCCGTGGCTCGGC
CGTTGCCCGCTTTGTACCTCCGTGAGCATCTATCTCCTCTCGCTGTTGAC
TCTCCCTTCCATGTCTTCCCGGCACTTGCGTAAATATCAATACTTCTCGG
TATCTTGTAGCTTCAAGGTGTGCAAGCCCTGGAGCCAGTGTACCTCCTCA
CCGACCCCTACCTCAACGCATTCCGA

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10409:3033..3958-

>mRNA_Ecto-sp9_F_contig10409.401.1 ID=mRNA_Ecto-sp9_F_contig10409.401.1|Name=mRNA_Ecto-sp9_F_contig10409.401.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10409:3033..3958- (Ectocarpus species9 EcSCA_722f female)
GTGGCGGCTGCCCTCCCTGGAGACTCGTTCACCAGCGAAGTGGTCGTCGG
AGGGGTGCTCAACTTCCTCAGCATCTACAACCTGCTCATCACCGGCCGTG
TCCTGCTCTCCTGGGTGCCGCAGGTGGCGGCTGCCCTCCCTGGAGACTCG
TTCACCAGCGAAGTGGTCGTCGGAGGGGTGCTCAACTTCCTCAGCATCTA
CAACCTGCTCATCACCGGCCGTGTCCTGCTCTCCTGGGTGCCGCAGCTTC
AAGGTGTGCAAGCCCTGGAGCCAGTGTACCTCCTCACCGACCCCTACCTC
AACGCATTCCGACTTCAAGGTGTGCAAGCCCTGGAGCCAGTGTACCTCCT
CACCGACCCCTACCTCAACGCATTCCGA