prot_Ecto-sp9_F_contig1034.340.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig1034.340.1
Unique Name	prot_Ecto-sp9_F_contig1034.340.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	83

Homology

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1034.340.1 vs.
Match: DNA (double-strand break repair rad50 ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ73_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.370e-44
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0

Query:    1 MRDCPQAAVLFACLGSSATSSMLSFVGGMPGTLPSGRCRLPRALREFSRTSGLVNDRHSGGVDGWYSTDRSNAKCEQRGRRNQ 83
            MRDCPQAAVLFACLGSSATSSMLSFVGGMPGTL SGRCRLPRALREFSRTSGLV+DRHSGGVDGWYS DRSNAKCEQRGRRNQ
Sbjct:    1 MRDCPQAAVLFACLGSSATSSMLSFVGGMPGTLQSGRCRLPRALREFSRTSGLVDDRHSGGVDGWYSIDRSNAKCEQRGRRNQ 83

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1034.340.1 vs.
Match: ABC (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB20_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 3.660e-42
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 0

Query:    1 MRDCPQAAVLFACLGSSATSSMLSFVGGMPGTLPSGRCRLPRALREFSRTSGLVNDRHSGGVDGWYSTDRSNAKCEQRGRRNQ 83
            MR+CPQA VLFACLGSSATSSMLSFVGGMPGTLPSGRCRLPRALREFSRTS  VNDRHSGGV+GWYSTD  NAKCEQRGRRNQ
Sbjct:    1 MRNCPQATVLFACLGSSATSSMLSFVGGMPGTLPSGRCRLPRALREFSRTSRFVNDRHSGGVNGWYSTDGGNAKCEQRGRRNQ 83

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig1034.340.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig1034.340.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
DNA	1.370e-44	96.39	double-strand break repair rad50 ATPase n=1 Tax=Ec...	[more]
ABC	3.660e-42	91.57	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..20
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 21..83
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..15
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig1034	contig	Ecto-sp9_F_contig1034:3875..4509 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig1034.340.1	mRNA_Ecto-sp9_F_contig1034.340.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig1034 3875..4601 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig1034.340.1 ID=prot_Ecto-sp9_F_contig1034.340.1|Name=mRNA_Ecto-sp9_F_contig1034.340.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=83bp
MRDCPQAAVLFACLGSSATSSMLSFVGGMPGTLPSGRCRLPRALREFSRT
SGLVNDRHSGGVDGWYSTDRSNAKCEQRGRRNQ