mRNA_Ecto-sp9_F_contig1034.340.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1034.340.1
Unique NamemRNA_Ecto-sp9_F_contig1034.340.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1034.340.1 vs.
Match: DNA (double-strand break repair rad50 ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ73_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.880e-44
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:   93 MRDCPQAAVLFACLGSSATSSMLSFVGGMPGTLPSGRCRLPRALREFSRTSGLVNDRHSGGVDGWYSTDRSNAKCEQRGRRNQ 341
            MRDCPQAAVLFACLGSSATSSMLSFVGGMPGTL SGRCRLPRALREFSRTSGLV+DRHSGGVDGWYS DRSNAKCEQRGRRNQ
Sbjct:    1 MRDCPQAAVLFACLGSSATSSMLSFVGGMPGTLQSGRCRLPRALREFSRTSGLVDDRHSGGVDGWYSIDRSNAKCEQRGRRNQ 83
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BLAST of mRNA_Ecto-sp9_F_contig1034.340.1 vs.
Match: ABC (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB20_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 5.020e-42
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 3 
Query:   93 MRDCPQAAVLFACLGSSATSSMLSFVGGMPGTLPSGRCRLPRALREFSRTSGLVNDRHSGGVDGWYSTDRSNAKCEQRGRRNQ 341
            MR+CPQA VLFACLGSSATSSMLSFVGGMPGTLPSGRCRLPRALREFSRTS  VNDRHSGGV+GWYSTD  NAKCEQRGRRNQ
Sbjct:    1 MRNCPQATVLFACLGSSATSSMLSFVGGMPGTLPSGRCRLPRALREFSRTSRFVNDRHSGGVNGWYSTDGGNAKCEQRGRRNQ 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1034.340.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
DNA1.880e-4496.39double-strand break repair rad50 ATPase n=1 Tax=Ec... [more]
ABC5.020e-4291.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1034contigEcto-sp9_F_contig1034:3875..4601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.3e-38
Seed eggNOG ortholog2880.D7FQ73
EggNOG OGs28INY@1,2QQZZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size343
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1034.340.1prot_Ecto-sp9_F_contig1034.340.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1034 3875..4509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928237.6945677-CDS-Ecto-sp9_F_contig1034:3874..41041622928237.6945677-CDS-Ecto-sp9_F_contig1034:3874..4104Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 3875..4104 -
1692277805.621851-CDS-Ecto-sp9_F_contig1034:3874..41041692277805.621851-CDS-Ecto-sp9_F_contig1034:3874..4104Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 3875..4104 -
1622928237.7158556-CDS-Ecto-sp9_F_contig1034:4490..45091622928237.7158556-CDS-Ecto-sp9_F_contig1034:4490..4509Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 4491..4509 -
1692277805.6322029-CDS-Ecto-sp9_F_contig1034:4490..45091692277805.6322029-CDS-Ecto-sp9_F_contig1034:4490..4509Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 4491..4509 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928237.7308714-UTR-Ecto-sp9_F_contig1034:4509..46011622928237.7308714-UTR-Ecto-sp9_F_contig1034:4509..4601Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1034 4510..4601 -
1692277805.648612-UTR-Ecto-sp9_F_contig1034:4509..46011692277805.648612-UTR-Ecto-sp9_F_contig1034:4509..4601Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1034 4510..4601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1034.340.1

>prot_Ecto-sp9_F_contig1034.340.1 ID=prot_Ecto-sp9_F_contig1034.340.1|Name=mRNA_Ecto-sp9_F_contig1034.340.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=83bp
MRDCPQAAVLFACLGSSATSSMLSFVGGMPGTLPSGRCRLPRALREFSRT
SGLVNDRHSGGVDGWYSTDRSNAKCEQRGRRNQ
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mRNA from alignment at Ecto-sp9_F_contig1034:3875..4601-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1034.340.1 ID=mRNA_Ecto-sp9_F_contig1034.340.1|Name=mRNA_Ecto-sp9_F_contig1034.340.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=727bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1034:3875..4601- (Ectocarpus species9 EcSCA_722f female)
ACCGTAGTACTCCTCGGTCACGTGCACAGCACGCATGCCACTCTGCCAAC
TCCTCATTTTCCCCCATCACGCACACCTAGCCGGAGGCGACGATGCGCGA
CTGCCCGCAGGGTAAGTTTCAGTCAGTAACTACTGCGACGTCCTGCCTGT
GTTCCTGTTTCATGTGACCCAAACTGCCATGTCCTGCTACACTGCCATTG
TCATTTCACGTAGACGCCACGGACTGGCCAGTTACTCGCTACGGGTATTG
CTGTGGTAGATGCTCACTTTTCAGCAAAACATCAGGGTGTGTGCGTCTGT
CGCACTGCTGTAGAAAAAGCCACGACCTCCCACGCATAGATACGATCTGT
TTACATGCTCGTTCGCTCTGCCTGCGGTAAGCAAGCAGTGCTGTGCTCAT
GTACACAACATCAACACTACTTGCTGTAATGTTCCTCCTGGATCCTCCCT
GTTCCGTCCTTGATTGCCGACTCCAACCAACAACAACCGCTGCGTAGCGG
CGGTGCTGTTCGCGTGCCTGGGCTCCTCCGCCACCTCGTCCATGCTGTCC
TTTGTCGGCGGCATGCCGGGAACACTGCCGAGCGGTCGTTGTCGGCTGCC
TCGCGCCTTGCGCGAGTTCTCCCGCACCAGCGGACTCGTGAATGATAGAC
ATAGCGGCGGCGTCGACGGCTGGTATTCCACTGACCGTAGCAACGCAAAG
TGCGAGCAGCGTGGGCGCCGAAATCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1034:3875..4601-

>mRNA_Ecto-sp9_F_contig1034.340.1 ID=mRNA_Ecto-sp9_F_contig1034.340.1|Name=mRNA_Ecto-sp9_F_contig1034.340.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1034:3875..4601- (Ectocarpus species9 EcSCA_722f female)
ATGCGCGACTGCCCGCAGGATGCGCGACTGCCCGCAGGCGGCGGTGCTGT
TCGCGTGCCTGGGCTCCTCCGCCACCTCGTCCATGCTGTCCTTTGTCGGC
GGCATGCCGGGAACACTGCCGAGCGGTCGTTGTCGGCTGCCTCGCGCCTT
GCGCGAGTTCTCCCGCACCAGCGGACTCGTGAATGATAGACATAGCGGCG
GCGTCGACGGCTGGTATTCCACTGACCGTAGCAACGCAAAGTGCGAGCAG
CGTGGGCGCCGAAATCAGCGGCGGTGCTGTTCGCGTGCCTGGGCTCCTCC
GCCACCTCGTCCATGCTGTCCTTTGTCGGCGGCATGCCGGGAACACTGCC
GAGCGGTCGTTGTCGGCTGCCTCGCGCCTTGCGCGAGTTCTCCCGCACCA
GCGGACTCGTGAATGATAGACATAGCGGCGGCGTCGACGGCTGGTATTCC
ACTGACCGTAGCAACGCAAAGTGCGAGCAGCGTGGGCGCCGAAATCAG
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