mRNA_Ecto-sp9_F_contig10321.327.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10321.327.1
Unique NamemRNA_Ecto-sp9_F_contig10321.327.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10321.327.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 7.340e-27
Identity = 80/102 (78.43%), Postives = 86/102 (84.31%), Query Frame = 3 
Query:   27 SVGDLSADVGAKVXXXXXXXXXXXXXXX-----------AKAPDMPSVEVKKPKKGLFGGLSFKKPSGKTSIEVPDVGVSVPDVTAEASVPDVSGSLPDISV 299
            SVG LSADVGA  XXXXXXXXXXXXXXX           A AP +PSVEVKKPKKGLFGGLSFKKPSGKTSIEVPDVGVSVPDV+AEASVPDVSG++PD+S+
Sbjct: 3067 SVGGLSADVGATXXXXXXXXXXXXXXXXXXXXXXXXXXSATAPGVPSVEVKKPKKGLFGGLSFKKPSGKTSIEVPDVGVSVPDVSAEASVPDVSGAVPDVSL 3168
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BLAST of mRNA_Ecto-sp9_F_contig10321.327.1 vs.
Match: Similar (to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.980e-20
Identity = 72/93 (77.42%), Postives = 77/93 (82.80%), Query Frame = 3 
Query:   30 VGDLSADVGAKVXXXXXXXXXXXXXXX-----------AKAPDMPSVEVKKPKKGLFGGLSFKKPSGKTSIEVPDVGVSVPDVTA-EASVPDV 272
            VGDLSADVGAKVXXXXXXXXXXXXXXX           AKAPDM SVEVKKPK+GLFGGLSFKKPSGKTSIEVPD  V+VPDV+A + +VPDV
Sbjct: 3695 VGDLSADVGAKVXXXXXXXXXXXXXXXXXXXXXXXXXSAKAPDMSSVEVKKPKRGLFGGLSFKKPSGKTSIEVPDADVTVPDVSASDXAVPDV 3787
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BLAST of mRNA_Ecto-sp9_F_contig10321.327.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY67_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.270e-9
Identity = 62/106 (58.49%), Postives = 70/106 (66.04%), Query Frame = 3 
Query:   27 SVGDLSADVGAKVXXXXXXXXXXXXXXX-----------AKAPDMPSVEVKKPKKGLFGGLSFKKPSGKTSIEVPDVGVSVPDVTA----EASVPDVSGSLPDISV 299
            SVGDLSADVGAK XXXXXXXXXXXXXXX           AKAP + SVEV+KPKK + GGLS KKPSGK SI VPD+   +P +      E S   VS + PD+ V
Sbjct:  650 SVGDLSADVGAKAXXXXXXXXXXXXXXXXXXXXXXXXXSAKAPGVKSVEVRKPKKDVLGGLSLKKPSGKISIGVPDMP-EMPSLEGGAGGELSPSGVSVTAPDVQV 754
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BLAST of mRNA_Ecto-sp9_F_contig10321.327.1 vs.
Match: Similar (to AHNAK nucleoprotein isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV2_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 6.630e-5
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 3 
Query:  132 SVEVKKPKKGLFGGLSFKKPS---GKTSIEVPDVGVSVPDVTAEASVPDVSGSLP 287
            S E KKPK+GLFGGLS KK S   GK  +EVP+V  ++PDV A A   D  GSLP
Sbjct:  307 SAEAKKPKRGLFGGLSLKKKSSSKGKGKLEVPEV--ALPDVLAVA---DTGGSLP 356
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10321.327.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized7.340e-2778.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Similar2.980e-2077.42to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculo... [more]
Protein1.270e-958.49kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Similar6.630e-558.18to AHNAK nucleoprotein isoform 1 n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10321contigEcto-sp9_F_contig10321:344..1006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue5.1e-17
Seed eggNOG ortholog2880.D8LB94
EggNOG free text desc.axon ensheathment
EggNOG OGs28M73@1,2QTQ3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size376
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10321.327.1prot_Ecto-sp9_F_contig10321.327.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10321 344..986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928233.7236702-CDS-Ecto-sp9_F_contig10321:343..5051622928233.7236702-CDS-Ecto-sp9_F_contig10321:343..505Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10321 344..505 -
1692277804.932686-CDS-Ecto-sp9_F_contig10321:343..5051692277804.932686-CDS-Ecto-sp9_F_contig10321:343..505Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10321 344..505 -
1622928234.6748865-CDS-Ecto-sp9_F_contig10321:794..9861622928234.6748865-CDS-Ecto-sp9_F_contig10321:794..986Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10321 795..986 -
1692277804.954253-CDS-Ecto-sp9_F_contig10321:794..9861692277804.954253-CDS-Ecto-sp9_F_contig10321:794..986Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10321 795..986 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928234.970172-UTR-Ecto-sp9_F_contig10321:986..10061622928234.970172-UTR-Ecto-sp9_F_contig10321:986..1006Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10321 987..1006 -
1692277804.9699366-UTR-Ecto-sp9_F_contig10321:986..10061692277804.9699366-UTR-Ecto-sp9_F_contig10321:986..1006Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10321 987..1006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10321.327.1

>prot_Ecto-sp9_F_contig10321.327.1 ID=prot_Ecto-sp9_F_contig10321.327.1|Name=mRNA_Ecto-sp9_F_contig10321.327.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp
MPSVGDLSADVGAKVGELSADVGGKVGELSAKAPDMPSVEVKKPKKGLFG
GLSFKKPSGKTSIEVPDVGVSVPDVTAEASVPDVSGSLPDISVPDVTVAA
PDVGADVSVPDVSGSIKV
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mRNA from alignment at Ecto-sp9_F_contig10321:344..1006-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10321.327.1 ID=mRNA_Ecto-sp9_F_contig10321.327.1|Name=mRNA_Ecto-sp9_F_contig10321.327.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=663bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10321:344..1006- (Ectocarpus species9 EcSCA_722f female)
CTGCAGAGGTGGACGCGTCGATGCCGTCCGTGGGTGACCTGTCTGCCGAT
GTCGGGGCCAAGGTGGGCGAGCTCTCGGCAGACGTGGGTGGTAAGGTGGG
CGAGCTCTCGGCCAAGGCCCCGGACATGCCATCGGTGGAGGTGAAGAAGC
CGAAGAAGGGTCTGTTCGGCGGTCTGTCGTTCAAGAAGCCGTCGGGCAAG
ACTAGCATCGAGGTGAGGAGGGCGTCAATTCGGGTATTTCATTATGGAAC
TGGCCTCGGTTTGGGCTGTTGTTGTTTTGTCCATGGTATGCCCGACATCG
TGGCACACGGCTTCGCTTTAACGCACGCTGTCCACGTGTTTCGCCTTGAA
CAAGGGAGTGGAAATATTTTTCAGTCGGCACCATGCCGGGTGTTTTCTGG
TTTGTTGCGTATTCCGCTACGTTATTTTCAACAACGTTCGTCGGAAAATA
CTTTTGACCGGCTACGCCGGACAACCGTTTGTTTCCCGTCCGTGTGAACA
GGTTCCGGATGTTGGTGTGTCCGTGCCGGACGTAACTGCTGAGGCGTCTG
TGCCGGACGTCAGCGGCTCTCTGCCTGATATCTCTGTGCCAGACGTGACC
GTGGCGGCGCCGGATGTGGGTGCAGACGTGTCTGTGCCGGACGTTTCTGG
CTCGATCAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10321:344..1006-

>mRNA_Ecto-sp9_F_contig10321.327.1 ID=mRNA_Ecto-sp9_F_contig10321.327.1|Name=mRNA_Ecto-sp9_F_contig10321.327.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10321:344..1006- (Ectocarpus species9 EcSCA_722f female)
ATGCCGTCCGTGGGTGACCTGTCTGCCGATGTCGGGGCCAAGGTGGGCGA
GCTCTCGGCAGACGTGGGTGGTAAGGTGGGCGAGCTCTCGGCCAAGGCCC
CGGACATGCCATCGGTGGAGGTGAAGAAGCCGAAGAAGGGTCTGTTCGGC
GGTCTGTCGTTCAAGAAGCCGTCGGGCAAGACTAGCATCGAGATGCCGTC
CGTGGGTGACCTGTCTGCCGATGTCGGGGCCAAGGTGGGCGAGCTCTCGG
CAGACGTGGGTGGTAAGGTGGGCGAGCTCTCGGCCAAGGCCCCGGACATG
CCATCGGTGGAGGTGAAGAAGCCGAAGAAGGGTCTGTTCGGCGGTCTGTC
GTTCAAGAAGCCGTCGGGCAAGACTAGCATCGAGGTTCCGGATGTTGGTG
TGTCCGTGCCGGACGTAACTGCTGAGGCGTCTGTGCCGGACGTCAGCGGC
TCTCTGCCTGATATCTCTGTGCCAGACGTGACCGTGGCGGCGCCGGATGT
GGGTGCAGACGTGTCTGTGCCGGACGTTTCTGGCTCGATCAAGGTGGTTC
CGGATGTTGGTGTGTCCGTGCCGGACGTAACTGCTGAGGCGTCTGTGCCG
GACGTCAGCGGCTCTCTGCCTGATATCTCTGTGCCAGACGTGACCGTGGC
GGCGCCGGATGTGGGTGCAGACGTGTCTGTGCCGGACGTTTCTGGCTCGA
TCAAGGTG
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