mRNA_Ecto-sp9_F_contig10316.324.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10316.324.1
Unique NamemRNA_Ecto-sp9_F_contig10316.324.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10316.324.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ6_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.220e-29
Identity = 56/81 (69.14%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:   16 NVKAKARWWCSSDTSCPASNLEFHRHPFDNDLEKCHDFVLETGIELCLVHASREEADRRTRRVRKVQATENHLSAAMARGG 258
            + + KARWWC S T C ASNLE HRHPF NDL+KCHDFVLETGI+LCLVH SREEAD  TRR    +A E    AAMARGG
Sbjct:    8 DARNKARWWCPSGTKCSASNLELHRHPFGNDLKKCHDFVLETGIQLCLVHVSREEADNETRRALNARAKEPPPPAAMARGG 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10316.324.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.220e-2969.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10316contigEcto-sp9_F_contig10316:2075..3247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928233.172983-CDS-Ecto-sp9_F_contig10316:2074..22441622928233.172983-CDS-Ecto-sp9_F_contig10316:2074..2244Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10316 2075..2244 +
1692277804.6142027-CDS-Ecto-sp9_F_contig10316:2074..22441692277804.6142027-CDS-Ecto-sp9_F_contig10316:2074..2244Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10316 2075..2244 +
1622928233.190158-CDS-Ecto-sp9_F_contig10316:3147..32471622928233.190158-CDS-Ecto-sp9_F_contig10316:3147..3247Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10316 3148..3247 +
1692277804.6216533-CDS-Ecto-sp9_F_contig10316:3147..32471692277804.6216533-CDS-Ecto-sp9_F_contig10316:3147..3247Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10316 3148..3247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10316.324.1prot_Ecto-sp9_F_contig10316.324.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10316 2075..3247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10316.324.1

>prot_Ecto-sp9_F_contig10316.324.1 ID=prot_Ecto-sp9_F_contig10316.324.1|Name=mRNA_Ecto-sp9_F_contig10316.324.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=90bp
MCRCRNVKAKARWWCSSDTSCPASNLEFHRHPFDNDLEKCHDFVLETGIE
LCLVHASREEADRRTRRVRKVQATENHLSAAMARGGEDIR
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mRNA from alignment at Ecto-sp9_F_contig10316:2075..3247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10316.324.1 ID=mRNA_Ecto-sp9_F_contig10316.324.1|Name=mRNA_Ecto-sp9_F_contig10316.324.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1173bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10316:2075..3247+ (Ectocarpus species9 EcSCA_722f female)
ATGTGTCGTTGTAGGAACGTCAAAGCCAAAGCCCGATGGTGGTGCTCATC
GGACACAAGCTGTCCTGCGTCAAACCTGGAGTTCCACCGCCACCCGTTCG
ACAACGACTTGGAGAAGTGCCATGATTTCGTTCTCGAAACAGGCATCGAA
CTGTGCCTAGTGCACGCGAGGTGAGTCAATCCAAACATTGTCGCGGTTGA
CCTTGGGTTGACTCGAGCTCCACATCTTGAGTGATTTCGCGTTTCAAGCG
GAGGGTGTGCATTGTTGTTGGGGTTCCGCAACTATGCGGAACACTCCGAA
ACATTCATTTCCTCGTGGGTGCATGCTGTGGAGCTCGAGCTGGAGGAAAG
TCCACCTTATAAGGCAGTGTTTGCCAGGCACCCCACAAAGACGTTGCCTT
TACAACTTCACACGGCAGTGTGGCGCATAAGGATTCAAATATACTCCGCA
ATCTTTCATCAGTCGCTCGATTGTTTGATATTTGGTGTCATCCTTGTTGT
GCATTGGATCGGGGGCATGCTTGTTGCCGCTTGTGATAATATTTTGGATC
TGTGACCACGGAACCACAACCATCCGGTGGGACGAAAACAAACATCAATT
TGGTTCTTGGTATTGATTTTATATCATTGCAATCATATACTACTGTACAA
TAGATGAATTTCGGTGGAAATCTCGGGTCCTCGCACCAACTAACGGTTGG
TCAGGTACTCAAGTACGTACCTTCCCCCGAGATCCTACGGTTAAGAGAGG
CATGCGCGTACTTTCGAACGCCTTTGACAAACTTCCCAAGTCTATGGCTT
GTGCGTTGTCACGTCAGCCAACCAAAGTAGCCGGTAGTCGGAGGGTGAGC
GCTCAACAAACAACAGTCCGAATTTCACGATACCTTTCCCCGGGTTACGC
ATAGTTCCTGTTCGGATAGGGAAGTATTTTCCAGGGCGTCTAGGGCGTCT
GGTGTATGTACATTGGTGTCTAATGTACAGGGTCATATGCAGTAGGTATT
GATACCTTTGCAACGAAAAAGCATCTGAAAGTTCCCGCCCTCTGTCAAAC
GCATTTTTTGCTGACATTTGTAGCCGGGAAGAAGCCGACAGGAGGACCCG
CAGGGTTCGCAAGGTACAGGCAACAGAGAACCACCTCTCGGCAGCGATGG
CGCGAGGTGGAGAAGACATACGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10316:2075..3247+

>mRNA_Ecto-sp9_F_contig10316.324.1 ID=mRNA_Ecto-sp9_F_contig10316.324.1|Name=mRNA_Ecto-sp9_F_contig10316.324.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10316:2075..3247+ (Ectocarpus species9 EcSCA_722f female)
ATGTGTCGTTGTAGGAACGTCAAAGCCAAAGCCCGATGGTGGTGCTCATC
GGACACAAGCTGTCCTGCGTCAAACCTGGAGTTCCACCGCCACCCGTTCG
ACAACGACTTGGAGAAGTGCCATGATTTCGTTCTCGAAACAGGCATCGAA
CTGTGCCTAGTGCACGCGAGATGTGTCGTTGTAGGAACGTCAAAGCCAAA
GCCCGATGGTGGTGCTCATCGGACACAAGCTGTCCTGCGTCAAACCTGGA
GTTCCACCGCCACCCGTTCGACAACGACTTGGAGAAGTGCCATGATTTCG
TTCTCGAAACAGGCATCGAACTGTGCCTAGTGCACGCGAGCCGGGAAGAA
GCCGACAGGAGGACCCGCAGGGTTCGCAAGGTACAGGCAACAGAGAACCA
CCTCTCGGCAGCGATGGCGCGAGGTGGAGAAGACATACGACCGGGAAGAA
GCCGACAGGAGGACCCGCAGGGTTCGCAAGGTACAGGCAACAGAGAACCA
CCTCTCGGCAGCGATGGCGCGAGGTGGAGAAGACATACGA
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