mRNA_Ecto-sp9_F_contig1031.320.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1031.320.1
Unique NamemRNA_Ecto-sp9_F_contig1031.320.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1031.320.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1031contigEcto-sp9_F_contig1031:21134..23108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_003790.1
Exons3
Model size496
Cds size495
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1031.320.1prot_Ecto-sp9_F_contig1031.320.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1031 21134..23108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928232.793686-CDS-Ecto-sp9_F_contig1031:21133..212091622928232.793686-CDS-Ecto-sp9_F_contig1031:21133..21209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1031 21134..21209 +
1692277804.4136438-CDS-Ecto-sp9_F_contig1031:21133..212091692277804.4136438-CDS-Ecto-sp9_F_contig1031:21133..21209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1031 21134..21209 +
1622928232.811381-CDS-Ecto-sp9_F_contig1031:22612..227481622928232.811381-CDS-Ecto-sp9_F_contig1031:22612..22748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1031 22613..22748 +
1692277804.4229548-CDS-Ecto-sp9_F_contig1031:22612..227481692277804.4229548-CDS-Ecto-sp9_F_contig1031:22612..22748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1031 22613..22748 +
1622928232.828061-CDS-Ecto-sp9_F_contig1031:22825..231081622928232.828061-CDS-Ecto-sp9_F_contig1031:22825..23108Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1031 22826..23108 +
1692277804.4321628-CDS-Ecto-sp9_F_contig1031:22825..231081692277804.4321628-CDS-Ecto-sp9_F_contig1031:22825..23108Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1031 22826..23108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1031.320.1

>prot_Ecto-sp9_F_contig1031.320.1 ID=prot_Ecto-sp9_F_contig1031.320.1|Name=mRNA_Ecto-sp9_F_contig1031.320.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=165bp
ANPHLSPPQPTHHVGSRRKIRVGSAAGEDTPNCGEKAATAALEQGPGRRW
GQDQPGCCSAYCRVPPSVRDRTCCTLRQALSKTPMRRCPTRPTSALRLFV
MEAIRDIQPLHLSRTRLSLLVSKSKPLSTDAALTVCVCPTTTRDPGLGGT
NSARRRQPINPHAR*
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mRNA from alignment at Ecto-sp9_F_contig1031:21134..23108+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1031.320.1 ID=mRNA_Ecto-sp9_F_contig1031.320.1|Name=mRNA_Ecto-sp9_F_contig1031.320.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1975bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1031:21134..23108+ (Ectocarpus species9 EcSCA_722f female)
GCCAACCCCCACCTCTCTCCCCCCCAACCTACACATCATGTCGGAAGCCG
GAGGAAGATCAGAGTTGGATCAGCAGGTATGTCTCAATCAACCTCGTCCA
CGATAGCGCGGCACCGTAAACCAAGCTTGTACAAATCATGGGTATGAATA
GCACCCAGCACACCCAACCGGCGAAACACTATGTTGTCCGGGGAGCACAC
ACGTACAGATAGAGTATTGTCTTCGCATGTACCTACTGCTAAGTTGACTT
CCCTCCTCTCTAGCGGCATGGTCGTCGAACATGGCGGCTATCCACAAATT
CAACATCTCCATCGTTCGAGCAAGAGAGGCTGCGGTGCTGTACACCGCAT
ATCGCCTCTGGTTGAAATCGCCATCAGCGCGGAACTGAATCCTGTTTCGG
TTGTAATCCCAGAATAGCCGCAACCTCTTTCGACCATTTTGACCGCGACT
CGATTCATAACAAACTGCCGACATTGGAACCTAACGGCTGGATCGCTGGA
TCATAGCCGGCGCGGACTGGTTTGACCCTCATTGCATCCAATCAGAGCTT
GTTCAACCAACACCCTCCCTCTGGGTGTTGAGGCAAATCGACTTTTCTCA
CTACCCGCGGGCTCTCGGGTACTCGTCCGAATACCGGGGTGAGAAAGAAC
TATCCCCGGGGTTTCCACAGTCTCTGTCCTGCCGTGGAGCTGCTTCAGGG
GCACAGAGGCACGCTCTCCTTATCTTGATGTGTCGACCACGCGCACTTCG
GCGAGAAGAGCCCCTCGAATGCCGTTTGATGTGCATGTTCGTGTATGGAG
CTGTCTTGTTCTCTCTAGAAACGTGACCCCACTGATATAGGGGCTGGGGG
AAGTAAAACCGGCCATGACATTGGTTCCTCCCACCCAACCCTGTTCCCCG
GAGCGTCCAGTTTTCTGGAAACCAATCCTCCGGGGAATCCCCGGAATACC
TAGCCGCCGCCCCTGTGTTCGGCGCACGCCTGGGCCACATGACCGTTTTT
TTGTAGCGTGCTTGTGGCCCCCTGGTATGCGAATGGGCCACATGACCGTT
TTTTTGTAGCGTGCTTGTGGCCCCCTGGTATGCGAATGTGTCACAGTCAC
AGCTGTTCCTATGAGCACGCACGGCAACGTGTTGACCACACAGAAACGGT
CTGGTAGCGGACAGATTTTCCCGCTCTCTAGAAGAATATCTTCGGGGATG
ACTTCCTGTGCCACGGGCACCACTGGCGCAAATTATCAATTCACCCCGCG
AAAAGGCAGTGGATGGTTATTAGCGGGAAGAACTTAAGGCCGAACTCCAG
GTAGCCACCCACCATCGGTAGCCACCAATGGGTAGCCATCAACCATCTTA
TAGGCAAGGCGGATTGACTTATGCTCGACAGAAAGAGATGTTCGTCAGAT
GCTGGATCAGCTAGTGAATCGACTGTTCTTCGGCTCGTGCCCACTTTCGT
GGTTGCCGAACTCGTGCTACTTGCCGCAGCAGGCGAGGATACACCCAACT
GTGGTGAAAAAGCTGCTACAGCTGCACTGGAACAAGGACCCGGCCGCCGA
TGGGGCCAAGATCAACCCGGATGCTGCAGTGCTTACTGCCGAGTACCTCC
GTCTGTTCGTGATCGGTGAGGTACCGCGAGTAGCTCTCATGGTTGCATCC
TTTCTCTGATGACGCGTACTAAGCATACGTGGGCACAAGCAGCACGTGCT
GTACCTTACGCCAAGCGTTGAGCAAGACGCCGATGCGGCGGTGCCCCACA
CGGCCGACTTCCGCCCTCCGCCTGTTCGTCATGGAGGCGATACGCGACAT
TCAACCGTTACACCTATCGCGCACACGACTGTCATTGCTCGTATCGAAGA
GCAAGCCATTGTCCACGGACGCGGCTCTAACGGTGTGCGTCTGCCCCACG
ACAACACGTGACCCTGGGCTCGGTGGCACGAACAGCGCTAGGCGGCGCCA
GCCGATCAATCCCCACGCACGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1031:21134..23108+

>mRNA_Ecto-sp9_F_contig1031.320.1 ID=mRNA_Ecto-sp9_F_contig1031.320.1|Name=mRNA_Ecto-sp9_F_contig1031.320.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1031:21134..23108+ (Ectocarpus species9 EcSCA_722f female)
GCCAACCCCCACCTCTCTCCCCCCCAACCTACACATCATGTCGGAAGCCG
GAGGAAGATCAGAGTTGGATCAGCAGGCCAACCCCCACCTCTCTCCCCCC
CAACCTACACATCATGTCGGAAGCCGGAGGAAGATCAGAGTTGGATCAGC
AGCAGGCGAGGATACACCCAACTGTGGTGAAAAAGCTGCTACAGCTGCAC
TGGAACAAGGACCCGGCCGCCGATGGGGCCAAGATCAACCCGGATGCTGC
AGTGCTTACTGCCGAGTACCTCCGTCTGTTCGTGATCGCAGGCGAGGATA
CACCCAACTGTGGTGAAAAAGCTGCTACAGCTGCACTGGAACAAGGACCC
GGCCGCCGATGGGGCCAAGATCAACCCGGATGCTGCAGTGCTTACTGCCG
AGTACCTCCGTCTGTTCGTGATCGCACGTGCTGTACCTTACGCCAAGCGT
TGAGCAAGACGCCGATGCGGCGGTGCCCCACACGGCCGACTTCCGCCCTC
CGCCTGTTCGTCATGGAGGCGATACGCGACATTCAACCGTTACACCTATC
GCGCACACGACTGTCATTGCTCGTATCGAAGAGCAAGCCATTGTCCACGG
ACGCGGCTCTAACGGTGTGCGTCTGCCCCACGACAACACGTGACCCTGGG
CTCGGTGGCACGAACAGCGCTAGGCGGCGCCAGCCGATCAATCCCCACGC
ACGCTGACACGTGCTGTACCTTACGCCAAGCGTTGAGCAAGACGCCGATG
CGGCGGTGCCCCACACGGCCGACTTCCGCCCTCCGCCTGTTCGTCATGGA
GGCGATACGCGACATTCAACCGTTACACCTATCGCGCACACGACTGTCAT
TGCTCGTATCGAAGAGCAAGCCATTGTCCACGGACGCGGCTCTAACGGTG
TGCGTCTGCCCCACGACAACACGTGACCCTGGGCTCGGTGGCACGAACAG
CGCTAGGCGGCGCCAGCCGATCAATCCCCACGCACGCTGA
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