mRNA_Ecto-sp9_F_contig10309.318.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10309.318.1
Unique NamemRNA_Ecto-sp9_F_contig10309.318.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10309.318.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL63_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 3.900e-72
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 1 
Query:    1 RFVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIAATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLFTPEASGLTFEVKSDLAFSTLW 354
            RFVHLSSAGVTRPGRPDLD+DTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGI ATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSL TPEASGLTFEVKSDLAFSTLW
Sbjct:  310 RFVHLSSAGVTRPGRPDLDMDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIPATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLLTPEASGLTFEVKSDLAFSTLW 427
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BLAST of mRNA_Ecto-sp9_F_contig10309.318.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW5_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 5.060e-69
Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 1 
Query:    1 RFVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIAATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLFTPEASGLTFEVKSDLAFSTLW 354
            R VHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLS+LLTYKLKGEDVIRDSGI ATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSL TPEASGLTFEVKSDLAFSTLW
Sbjct:  493 RLVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSYLLTYKLKGEDVIRDSGIPATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLLTPEASGLTFEVKSDLAFSTLW 610
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BLAST of mRNA_Ecto-sp9_F_contig10309.318.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FWF9_VITBC)

HSP 1 Score: 171 bits (432), Expect = 1.720e-48
Identity = 78/118 (66.10%), Postives = 98/118 (83.05%), Query Frame = 1 
Query:    1 RFVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIAATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLFTPEASGLTFEVKSDLAFSTLW 354
            R + +SSAGVTRPGRP LD++ EPPAVRMN+ML  +LTYKLKGEDV+RDSG+  ++IRPCALTEEPAGAP+ +GQGD +KGKISR+D+A+L V+SL TP A+  T+E+K  L FS  W
Sbjct:  359 RLIQVSSAGVTRPGRPGLDLEKEPPAVRMNDMLGGILTYKLKGEDVVRDSGVTYSVIRPCALTEEPAGAPLQIGQGDEIKGKISREDVADLVVASLLTPAAANKTYEIKCTLPFSEPW 476
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BLAST of mRNA_Ecto-sp9_F_contig10309.318.1 vs.
Match: Nadh:ubiquinone (oxidoreductase complex i intermediate-associated protein 30 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT61_9STRA)

HSP 1 Score: 163 bits (412), Expect = 4.580e-45
Identity = 80/118 (67.80%), Postives = 94/118 (79.66%), Query Frame = 1 
Query:    1 RFVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIAATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLFTPEASGLTFEVKSDLAFSTLW 354
            RFVH+SSAGV RPGRP + ++ EPPAVRMN+ML  +LTYKLKGE+ IR SG+  TIIRPCALTEEPA  P+ V  GD +KGK+SRDD+A LAV +L  PEA+ LTFEVKS LAFS  W
Sbjct:  455 RFVHISSAGVERPGRPGVVLEEEPPAVRMNDMLGGILTYKLKGEEAIRASGLPYTIIRPCALTEEPANMPLEVDVGDTIKGKVSRDDVARLAVYALACPEATDLTFEVKSSLAFSQQW 572
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BLAST of mRNA_Ecto-sp9_F_contig10309.318.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453ATR9_AEGTS)

HSP 1 Score: 155 bits (393), Expect = 1.130e-44
Identity = 75/115 (65.22%), Postives = 93/115 (80.87%), Query Frame = 1 
Query:    1 RFVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIAATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLFTPEASGLTFEVKSDLAFS 345
            RFVH+SSAGVTRP RP LD+  +PPAVRMN+ L  +LTYKLKGED+IR+SG+  TI+RPCALTEEPAGA +I  QGD + GKISR+++A L V++L +P A G TFEVKS + FS
Sbjct:  145 RFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLIRESGVPYTIVRPCALTEEPAGADLIFEQGDNITGKISREEVARLCVAALASPSAVGKTFEVKSTVPFS 259
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BLAST of mRNA_Ecto-sp9_F_contig10309.318.1 vs.
Match: uncharacterized (protein At2g34460, chloroplastic-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E195D)

HSP 1 Score: 151 bits (381), Expect = 1.250e-44
Identity = 71/114 (62.28%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:    4 FVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIAATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLFTPEASGLTFEVKSDLAFS 345
            FVH+SSAGVTRPGRP LD+  +PPAVR+N+ L  +LTYKLKGED+IR+SGI  TI+RPCAL+EEPAGA +I  QGD + GKISR+++A + +++L +P A   TFEVKS + FS
Sbjct:    2 FVHVSSAGVTRPGRPGLDLSKQPPAVRLNKELGFILTYKLKGEDLIRESGIPYTIVRPCALSEEPAGADLIFDQGDNITGKISREEVARICIAALGSPYACNKTFEVKSTIPFS 115
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BLAST of mRNA_Ecto-sp9_F_contig10309.318.1 vs.
Match: NAD(P)-bd_dom (domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A1R3L5G1_ASPOF)

HSP 1 Score: 153 bits (386), Expect = 1.750e-44
Identity = 72/115 (62.61%), Postives = 93/115 (80.87%), Query Frame = 1 
Query:    1 RFVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIAATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLFTPEASGLTFEVKSDLAFS 345
            RFVH+SSAGVTRPGRP LD+  +PPAVR+N+ L  +LTYKLKGED+IR+SGI  TI+RPCAL+EEPAGA +I  QGD + GKISR+++A + +++L +P A   TFEVKS + FS
Sbjct:   71 RFVHVSSAGVTRPGRPGLDLSKQPPAVRLNKELGFILTYKLKGEDLIRESGIPYTIVRPCALSEEPAGADLIFDQGDNITGKISREEVARICIAALGSPYACNKTFEVKSTIPFS 185
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BLAST of mRNA_Ecto-sp9_F_contig10309.318.1 vs.
Match: Putative (NAD(P)-binding domain-containing protein n=4 Tax=Rosoideae TaxID=171638 RepID=A0A2P6Q4X2_ROSCH)

HSP 1 Score: 152 bits (383), Expect = 1.900e-44
Identity = 72/115 (62.61%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    1 RFVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIAATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLFTPEASGLTFEVKSDLAFS 345
            RFVH+ SAGVTRP RP LD+  +PPAVR+N+ L  +LT+KLKGED+IR+SGI  TI+RPCALTEEPAGA +I  QGD + GKISR+++A++ V++L +P A+G TFEVKS + FS
Sbjct:   38 RFVHVGSAGVTRPERPGLDLSKQPPAVRLNKELDFILTFKLKGEDLIRESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKISREEVAQICVAALESPYATGKTFEVKSVIPFS 152
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BLAST of mRNA_Ecto-sp9_F_contig10309.318.1 vs.
Match: Nadh:ubiquinone (oxidoreductase complex i intermediate-associated protein 30 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQM7_NANGC)

HSP 1 Score: 163 bits (412), Expect = 3.030e-44
Identity = 80/118 (67.80%), Postives = 94/118 (79.66%), Query Frame = 1 
Query:    1 RFVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIAATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLFTPEASGLTFEVKSDLAFSTLW 354
            RFVH+SSAGV RPGRP + ++ EPPAVRMN+ML  +LTYKLKGE+ IR SG+  TIIRPCALTEEPA  P+ V  GD +KGK+SRDD+A LAV +L  PEA+ LTFEVKS LAFS  W
Sbjct:  455 RFVHISSAGVERPGRPGVVLEEEPPAVRMNDMLGGILTYKLKGEEAIRASGLPYTIIRPCALTEEPANMPLEVDVGDTIKGKVSRDDVARLAVYALACPEATDLTFEVKSSLAFSQQW 572
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BLAST of mRNA_Ecto-sp9_F_contig10309.318.1 vs.
Match: Hypothetical (protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3U8L1_9CHLO)

HSP 1 Score: 160 bits (406), Expect = 5.250e-44
Identity = 73/117 (62.39%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    4 FVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIAATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLFTPEASGLTFEVKSDLAFSTLW 354
            +VH+SSAGVTRP RP +D+D EPPAV++N+ L  +L+YKLKGED++R++G+   I+RPCALTEEPAGA ++V QGD +KGKISR+D+AEL V+ L  PEAS  TFE+KS + FST W
Sbjct:  479 WVHVSSAGVTRPNRPGIDVDAEPPAVKLNDALGGILSYKLKGEDMVREAGMPFAIVRPCALTEEPAGAELLVDQGDTIKGKISREDVAELCVALLSQPEASSTTFEIKSTVPFSTPW 595
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10309.318.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.900e-7297.46protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.060e-6996.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.720e-4866.10protein n=2 Tax=Vitrella brassicaformis TaxID=1169... [more]
Nadh:ubiquinone4.580e-4567.80oxidoreductase complex i intermediate-associated p... [more]
Uncharacterized1.130e-4465.22protein n=1 Tax=Aegilops tauschii subsp. strangula... [more]
uncharacterized1.250e-4462.28protein At2g34460, chloroplastic-like n=1 Tax=Aspa... [more]
NAD(P)-bd_dom1.750e-4462.61domain-containing protein n=1 Tax=Asparagus offici... [more]
Putative1.900e-4462.61NAD(P)-binding domain-containing protein n=4 Tax=R... [more]
Nadh:ubiquinone3.030e-4467.80oxidoreductase complex i intermediate-associated p... [more]
Hypothetical5.250e-4462.39protein n=1 Tax=Picocystis salinarum TaxID=88271 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10309contigEcto-sp9_F_contig10309:671..2406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score232.6
Seed ortholog evalue9.2e-59
Seed eggNOG ortholog2880.D8LL63
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADH:ubiquinone oxidoreductase intermediate-associated protein 30
Ec32 orthologEc-25_000150.1
Exons3
Model size354
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10309.318.1prot_Ecto-sp9_F_contig10309.318.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10309 671..2406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928232.212041-CDS-Ecto-sp9_F_contig10309:670..7481622928232.212041-CDS-Ecto-sp9_F_contig10309:670..748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10309 671..748 +
1692277804.182099-CDS-Ecto-sp9_F_contig10309:670..7481692277804.182099-CDS-Ecto-sp9_F_contig10309:670..748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10309 671..748 +
1622928232.2258463-CDS-Ecto-sp9_F_contig10309:1599..17751622928232.2258463-CDS-Ecto-sp9_F_contig10309:1599..1775Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10309 1600..1775 +
1692277804.194631-CDS-Ecto-sp9_F_contig10309:1599..17751692277804.194631-CDS-Ecto-sp9_F_contig10309:1599..1775Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10309 1600..1775 +
1622928232.2391937-CDS-Ecto-sp9_F_contig10309:2306..24061622928232.2391937-CDS-Ecto-sp9_F_contig10309:2306..2406Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10309 2307..2406 +
1692277804.2044897-CDS-Ecto-sp9_F_contig10309:2306..24061692277804.2044897-CDS-Ecto-sp9_F_contig10309:2306..2406Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10309 2307..2406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10309.318.1

>prot_Ecto-sp9_F_contig10309.318.1 ID=prot_Ecto-sp9_F_contig10309.318.1|Name=mRNA_Ecto-sp9_F_contig10309.318.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp
RFVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSHLLTYKLKGEDVIRDS
GIAATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLFTPE
ASGLTFEVKSDLAFSTLW
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mRNA from alignment at Ecto-sp9_F_contig10309:671..2406+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10309.318.1 ID=mRNA_Ecto-sp9_F_contig10309.318.1|Name=mRNA_Ecto-sp9_F_contig10309.318.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1736bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10309:671..2406+ (Ectocarpus species9 EcSCA_722f female)
CGATTTGTCCACCTTAGCTCTGCGGGAGTTACAAGGCCAGGGAGGCCGGA
TCTCGACATCGACACAGAACCACCGGCGGTAAGGACCCGTATTCACGTAT
TAACGAAGGCCCAAAAAATCAAAATCGGAAATCGAAATCGAGCTGTGATT
GGTAAAAGACCAAAATAACGCCGTTCCGGGTTGTAATCGGAGGACGTTTC
TTTAGAAAAAAATATTACAATCATTTTTTTTTTTTCCGGCCAACAGAGTC
GATTTTGACTTTGATTTTTGGACCTTCGTTAATACGGACCCCAAGGAAGA
GGAGAAGTGGCAAATGTCCATCTTGACTGCACGTGGCACGCGGCCTGGAT
AGTGTTATCACCTGGCTGTGCGGTGCCTGCCGAACAAGCGCGTTGTTTGT
TGCGCGTGGTATGTGCTTGTCTTGTCCAAGTCTCTGGCGTTGTTGGCGGG
GCGGCTGCCGAATATCATGCATGTTGTGTAGAGCCTGGTCTTGAAGTTCT
GTGTGCGGTGTTTATGTGTTTTATGCCGAGGCTACTCTCACGGCCTCATG
ATGTGTAATGTACCCTCACCGAGCAAGACAAACACACACACACACTTGAA
TGCATAGCCCATGCTGACGGTTGCGTACTGACAAGTCTTGTTGATGGATG
TCAGGGTTGTAGTCGCCATATCCGCCGCGTTCACCCAATTGAGACAAGTG
CTCGTTTTTGTAGCTTTTAGGCACGCCGTATATCCCCTTATGTACAAACG
TGTGTCTAACTTGGTCGTCAATACCATGCATTTTCCATATTGTCGCAGCA
ACAACCACACATGTATGCATGCCACGTATGTTTCCTGGTGCTGTGGGGCC
GACTCAAAACAACCATTTTTGAAGCCATGAGCACCTCAATGCAACTACAA
TACATGTTCTGCTTTCTCGAATGACCTAGGTGCGCATGAACGAGATGCTG
TCACACTTGCTTACCTACAAGCTCAAGGGGGAGGATGTGATCCGCGACAG
CGGGATAGCGGCGACGATCATCAGGCCCTGCGCTCTCACCGAAGAGCCTG
CCGGGGCGCCGATGATCGTTGGCCAGGGCGACTACCTCAAGGGCAAGATT
AGCAGGTGAGCATCGTTAGCCAGGGTGATTATGTACTTCAACGGAAACAT
TAACAGGAGATCATCGTTTCCGAGGGTGACTATGTATCTCAACGGAAAGA
TTAGCAGGTGAGCATCGTCAAGTGGCTACCTCAACGGTAAGCTTTGCAGG
CGAGTATCGTTGGCCAGGATGACTTGTATGTACATCAAGCGTAGGATTAG
CAGGTTGGCGTCGTTAAAGGGCTCTGCAGCCGAACACGGGTCGTAAACTA
AACTAAACTGGACATTTGTTTTTTTCAGTCGTCCCCGCCATACGACCACT
CGTACTTTTTCTTGAAACTAGGTGTCCTTAAGAGCGGGAAGTGTCCTTAA
ACGTATCCCGTGTTTGGTTTTTACGTGCTGTTGTCCATAAAGAGGGGAAT
TTCCCTCAGTTTTGTTTTTGTGTGGTTAAAAGCGGGGACGACTGTGTTCC
AGCACCCTCTCGAAACTTTTACTGCTGTGTTATCAAGACCCTGCCGACGC
AATTCGTCTTTGCTGATGCGTGTCGCGTCCCAACAGGGATGACATAGCAG
AGCTGGCGGTTTCATCCCTCTTCACCCCAGAGGCTAGTGGTCTAACCTTC
GAGGTCAAGTCGGACCTGGCCTTCAGCACGCTGTGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10309:671..2406+

>mRNA_Ecto-sp9_F_contig10309.318.1 ID=mRNA_Ecto-sp9_F_contig10309.318.1|Name=mRNA_Ecto-sp9_F_contig10309.318.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10309:671..2406+ (Ectocarpus species9 EcSCA_722f female)
CGATTTGTCCACCTTAGCTCTGCGGGAGTTACAAGGCCAGGGAGGCCGGA
TCTCGACATCGACACAGAACCACCGGCGCGATTTGTCCACCTTAGCTCTG
CGGGAGTTACAAGGCCAGGGAGGCCGGATCTCGACATCGACACAGAACCA
CCGGCGGTGCGCATGAACGAGATGCTGTCACACTTGCTTACCTACAAGCT
CAAGGGGGAGGATGTGATCCGCGACAGCGGGATAGCGGCGACGATCATCA
GGCCCTGCGCTCTCACCGAAGAGCCTGCCGGGGCGCCGATGATCGTTGGC
CAGGGCGACTACCTCAAGGGCAAGATTAGCAGGTGCGCATGAACGAGATG
CTGTCACACTTGCTTACCTACAAGCTCAAGGGGGAGGATGTGATCCGCGA
CAGCGGGATAGCGGCGACGATCATCAGGCCCTGCGCTCTCACCGAAGAGC
CTGCCGGGGCGCCGATGATCGTTGGCCAGGGCGACTACCTCAAGGGCAAG
ATTAGCAGGGATGACATAGCAGAGCTGGCGGTTTCATCCCTCTTCACCCC
AGAGGCTAGTGGTCTAACCTTCGAGGTCAAGTCGGACCTGGCCTTCAGCA
CGCTGTGGGGATGACATAGCAGAGCTGGCGGTTTCATCCCTCTTCACCCC
AGAGGCTAGTGGTCTAACCTTCGAGGTCAAGTCGGACCTGGCCTTCAGCA
CGCTGTGG
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