mRNA_Ecto-sp9_F_contig10308.317.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10308.317.1
Unique NamemRNA_Ecto-sp9_F_contig10308.317.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10308.317.1 vs.
Match: Putative (phospholipase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTQ2_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.980e-61
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 3 
Query:  129 MGAKTTAGDVNDKSDEMKSLAVSYMGVPLHFLASLVWAAVSRLLTMFRPREQTGAGFNKPVSPAPQQPLVRLNNLPQSEEYFINERGRVIHFRSYLPQSADEIKAVVLFSHG 464
            MGAKTTAGDVN KS+EMKSLAVSYMGVPLHFLASLVWAAVSRLLTMFRPREQTGAGFNKPVSPAPQQPLVRLNNLPQSEEYFINERGRVIHFRSYLPQSADEIKAVVLFSHG
Sbjct:    1 MGAKTTAGDVNGKSNEMKSLAVSYMGVPLHFLASLVWAAVSRLLTMFRPREQTGAGFNKPVSPAPQQPLVRLNNLPQSEEYFINERGRVIHFRSYLPQSADEIKAVVLFSHG 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10308.317.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Putative1.980e-6198.21phospholipase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10308contigEcto-sp9_F_contig10308:13..1732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.2
Seed ortholog evalue1.2e-55
Seed eggNOG ortholog2880.D8LTQ2
EggNOG free text desc.acylglycerol lipase activity
EggNOG OGsCOG2267@1,KOG1455@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1390
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10308.317.1prot_Ecto-sp9_F_contig10308.317.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10308 141..809 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928232.136259-UTR-Ecto-sp9_F_contig10308:12..1401622928232.136259-UTR-Ecto-sp9_F_contig10308:12..140Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10308 13..140 +
1692277804.137325-UTR-Ecto-sp9_F_contig10308:12..1401692277804.137325-UTR-Ecto-sp9_F_contig10308:12..140Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10308 13..140 +
1622928232.1728814-UTR-Ecto-sp9_F_contig10308:809..17321622928232.1728814-UTR-Ecto-sp9_F_contig10308:809..1732Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10308 810..1732 +
1692277804.1695204-UTR-Ecto-sp9_F_contig10308:809..17321692277804.1695204-UTR-Ecto-sp9_F_contig10308:809..1732Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10308 810..1732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928232.1484337-CDS-Ecto-sp9_F_contig10308:140..3711622928232.1484337-CDS-Ecto-sp9_F_contig10308:140..371Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10308 141..371 +
1692277804.1480274-CDS-Ecto-sp9_F_contig10308:140..3711692277804.1480274-CDS-Ecto-sp9_F_contig10308:140..371Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10308 141..371 +
1622928232.1585522-CDS-Ecto-sp9_F_contig10308:701..8091622928232.1585522-CDS-Ecto-sp9_F_contig10308:701..809Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10308 702..809 +
1692277804.1563206-CDS-Ecto-sp9_F_contig10308:701..8091692277804.1563206-CDS-Ecto-sp9_F_contig10308:701..809Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10308 702..809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10308.317.1

>prot_Ecto-sp9_F_contig10308.317.1 ID=prot_Ecto-sp9_F_contig10308.317.1|Name=mRNA_Ecto-sp9_F_contig10308.317.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=113bp
MGAKTTAGDVNDKSDEMKSLAVSYMGVPLHFLASLVWAAVSRLLTMFRPR
EQTGAGFNKPVSPAPQQPLVRLNNLPQSEEYFINERGRVIHFRSYLPQSA
DEIKAVVLFSHG*
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mRNA from alignment at Ecto-sp9_F_contig10308:13..1732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10308.317.1 ID=mRNA_Ecto-sp9_F_contig10308.317.1|Name=mRNA_Ecto-sp9_F_contig10308.317.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1720bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10308:13..1732+ (Ectocarpus species9 EcSCA_722f female)
CGGGAAGTCGATGTGCCTCATCATTTCAGTCGCATTTTCACGTTGCACCG
AGGACTACAGTAGAAGATACGGAGTAGATTGAGAACACGGCGGTGTGGCC
GAGGTCAGCTACACTAGAAAAACGAGAAATGGGAGCGAAGACCACTGCTG
GGGATGTGAATGACAAGTCCGACGAGATGAAGAGCCTGGCGGTGTCGTAC
ATGGGCGTTCCTCTGCACTTCCTGGCGTCGTTGGTCTGGGCCGCCGTGTC
CCGCTTGCTGACGATGTTCCGCCCACGCGAGCAGACGGGGGCAGGCTTCA
ACAAACCGGTGTCTCCTGCACCCCAACAGCCGTTAGTGCGCCTCAACAAC
CTTCCACAGGTCAGTGGCTGTTTGGACGTGCTTCTTCTAGCTGGGGGTGT
CGTCGATACATCGGGGGCGAGGTTCAACATGCATCGCCGCAGACCACCGC
GATGATGGCGCAAAAAAACGCGTCGTCGTCGTCTCTCCCCTCGGCAATCA
TCACTCACATTCACGGGTGTGGCGTCCTCTCCAACCCGGAGGAAACGCCG
AGAGCAAGAGAGGAATCTCGCCGGCGATGTCGAACAGCGACAGATACCTT
CCCCTGACTAGTCCCCATGCCCTCCTTGTTCGGTTCATTGTTTTTGTTGA
TGCTGATGGTTGTTTGTTTTTCGCGCGCGCGGGACACAGAGCGAGGAGTA
CTTCATCAACGAGCGGGGGCGCGTCATCCACTTCAGATCGTACCTTCCGC
AGTCTGCCGATGAGATCAAGGCTGTCGTGCTCTTCTCCCACGGGTGAGAG
CTCGTGCATGGGCCATCTGCACTCCACGGGCATGGTCAGGCGACCAGCTC
GGCGTCCTCGCGCAGCAAATGCGAAATTCATTTTTTCCGGTATTTTTCTC
AAGGCGACCAAAGGAGACTGATTGAACACTCAACACGTGTATGATAGCGG
CGGTATGTGGAGGTTGCTGCGTTGTTCTTCACTCCAACTGCGTCTTTTTT
CCTTGTTTATCAAGTAGGCCAATATAGGAACCACGGGGTACAGGGGTTGC
GAATTGTTGTGCTCTTCTAGGATCGCCTGGGTTGAACCCTGCGGCTCAAC
AGCACTGCCAGTGTTTTACTGGTTTTATTCTGAGCGGGGGGGTCAGCTTG
AATGCGCTCCTCCCATCTTCCACAGCAGCAGGAGGAACGTAAAAAAAGCG
GCTTGTTTCGATTGAGGCCAGAGGACCGGTGCTGTTGTGATACCCATATT
TTCGGAAACAGTTCCGGGTGATCCTATACTCGGTGTACAGAGAGCAAGCT
TCAAATGTTCCAGTGCACGTACGCGTACGTACGTCTGTTTCAAGAGCCAT
ATTTTCCTACTCGGGAGAAAACGGCTCTATTACTTCCACAGGCTCCCGCG
TTACCGCGCAGACCGCACGATCGGGGTTCATTGTATGATATGGTACATAG
TGTACGTGAAGAACTTTTGAGATGCGGATACAAGCTCGCTCTTGATAGCG
CTCGTATGATAAGTGTACGCGCGTGAAAATGTTGTATGTGGTGTCTTGCA
CCTCTATGCAGTGTCTTGCACCTCTATGGCGTACAACGTGGTATATATAT
ACTGTAGGTAACGAGCGCGCAGTGCATTTTTGGTTTTTATGTATAGGTCA
ACATTGGGAAACCTACAACTCCAACCGGCACATGGGTGCGTCGTGCTCCC
AGATAAGCACTAGCAGCGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10308:13..1732+

>mRNA_Ecto-sp9_F_contig10308.317.1 ID=mRNA_Ecto-sp9_F_contig10308.317.1|Name=mRNA_Ecto-sp9_F_contig10308.317.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10308:13..1732+ (Ectocarpus species9 EcSCA_722f female)
ATGGGAGCGAAGACCACTGCTGGGGATGTGAATGACAAGTCCGACGAGAT
GAAGAGCCTGGCGGTGTCGTACATGGGCGTTCCTCTGCACTTCCTGGCGT
CGTTGGTCTGGGCCGCCGTGTCCCGCTTGCTGACGATGTTCCGCCCACGC
GAGCAGACGGGGGCAGGCTTCAACAAACCGGTGTCTCCTGCACCCCAACA
GCCGTTAGTGCGCCTCAACAACCTTCCACAGATGGGAGCGAAGACCACTG
CTGGGGATGTGAATGACAAGTCCGACGAGATGAAGAGCCTGGCGGTGTCG
TACATGGGCGTTCCTCTGCACTTCCTGGCGTCGTTGGTCTGGGCCGCCGT
GTCCCGCTTGCTGACGATGTTCCGCCCACGCGAGCAGACGGGGGCAGGCT
TCAACAAACCGGTGTCTCCTGCACCCCAACAGCCGTTAGTGCGCCTCAAC
AACCTTCCACAGAGCGAGGAGTACTTCATCAACGAGCGGGGGCGCGTCAT
CCACTTCAGATCGTACCTTCCGCAGTCTGCCGATGAGATCAAGGCTGTCG
TGCTCTTCTCCCACGGGTGAAGCGAGGAGTACTTCATCAACGAGCGGGGG
CGCGTCATCCACTTCAGATCGTACCTTCCGCAGTCTGCCGATGAGATCAA
GGCTGTCGTGCTCTTCTCCCACGGGTGA
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