mRNA_Ecto-sp9_F_contig10307.316.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10307.316.1
Unique NamemRNA_Ecto-sp9_F_contig10307.316.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10307.316.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10307contigEcto-sp9_F_contig10307:2471..3026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size557
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928231.9206765-CDS-Ecto-sp9_F_contig10307:2470..28421622928231.9206765-CDS-Ecto-sp9_F_contig10307:2470..2842Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10307 2471..2842 +
1692277804.058785-CDS-Ecto-sp9_F_contig10307:2470..28421692277804.058785-CDS-Ecto-sp9_F_contig10307:2470..2842Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10307 2471..2842 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928231.9404416-UTR-Ecto-sp9_F_contig10307:2842..30261622928231.9404416-UTR-Ecto-sp9_F_contig10307:2842..3026Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10307 2843..3026 +
1692277804.0676372-UTR-Ecto-sp9_F_contig10307:2842..30261692277804.0676372-UTR-Ecto-sp9_F_contig10307:2842..3026Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10307 2843..3026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10307.316.1prot_Ecto-sp9_F_contig10307.316.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10307 2471..2842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10307.316.1

>prot_Ecto-sp9_F_contig10307.316.1 ID=prot_Ecto-sp9_F_contig10307.316.1|Name=mRNA_Ecto-sp9_F_contig10307.316.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=124bp
AGAAAAAPSEAVDEIHDTTRTCVGNKQCSETSITSSSGWCSDRGLTLTTS
ASRPLPTAAASTERLCSSDEDEKGGQCLRRWRQGESRDQGNGGCWPRWWW
YRKLVGVRVPSFAIALYTRTQAP*
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mRNA from alignment at Ecto-sp9_F_contig10307:2471..3026+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10307.316.1 ID=mRNA_Ecto-sp9_F_contig10307.316.1|Name=mRNA_Ecto-sp9_F_contig10307.316.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=556bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10307:2471..3026+ (Ectocarpus species9 EcSCA_722f female)
GCAGGTGCTGCTGCTGCTGCTCCATCCGAAGCGGTAGACGAAATTCACGA
CACAACACGCACGTGTGTAGGCAACAAGCAGTGCTCAGAAACATCCATAA
CCTCATCATCCGGGTGGTGTTCTGACCGAGGGCTAACGTTAACTACGAGC
GCTTCCCGACCACTACCCACTGCGGCTGCGTCTACCGAGCGGTTATGTTC
CTCCGACGAGGACGAGAAAGGAGGACAGTGTCTACGGCGGTGGAGGCAAG
GGGAAAGCCGCGACCAAGGCAACGGAGGGTGTTGGCCTAGGTGGTGGTGG
TATCGAAAGTTGGTCGGTGTGCGGGTGCCGTCCTTCGCAATCGCCCTGTA
CACACGCACACAAGCACCCTGACTCCCTTTCTGCACAACGTAGAATCCCG
AACGGCCTAAAACTCTACCGACTGTGTTGGAGGGAAGCAACACACACCGG
CTTCCACTGGCCTAGTACCTCACCGGAGCCCGTGTTCTGCTGCTTTCGAG
AGAGATTGTTCCTCGCCTGTGCTCTGCGTGCTCTCGAGCACCTGCGAGTC
AACAAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10307:2471..3026+

>mRNA_Ecto-sp9_F_contig10307.316.1 ID=mRNA_Ecto-sp9_F_contig10307.316.1|Name=mRNA_Ecto-sp9_F_contig10307.316.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10307:2471..3026+ (Ectocarpus species9 EcSCA_722f female)
GCAGGTGCTGCTGCTGCTGCTCCATCCGAAGCGGTAGACGAAATTCACGA
CACAACACGCACGTGTGTAGGCAACAAGCAGTGCTCAGAAACATCCATAA
CCTCATCATCCGGGTGGTGTTCTGACCGAGGGCTAACGTTAACTACGAGC
GCTTCCCGACCACTACCCACTGCGGCTGCGTCTACCGAGCGGTTATGTTC
CTCCGACGAGGACGAGAAAGGAGGACAGTGTCTACGGCGGTGGAGGCAAG
GGGAAAGCCGCGACCAAGGCAACGGAGGGTGTTGGCCTAGGTGGTGGTGG
TATCGAAAGTTGGTCGGTGTGCGGGTGCCGTCCTTCGCAATCGCCCTGTA
CACACGCACACAAGCACCCTGAGCAGGTGCTGCTGCTGCTGCTCCATCCG
AAGCGGTAGACGAAATTCACGACACAACACGCACGTGTGTAGGCAACAAG
CAGTGCTCAGAAACATCCATAACCTCATCATCCGGGTGGTGTTCTGACCG
AGGGCTAACGTTAACTACGAGCGCTTCCCGACCACTACCCACTGCGGCTG
CGTCTACCGAGCGGTTATGTTCCTCCGACGAGGACGAGAAAGGAGGACAG
TGTCTACGGCGGTGGAGGCAAGGGGAAAGCCGCGACCAAGGCAACGGAGG
GTGTTGGCCTAGGTGGTGGTGGTATCGAAAGTTGGTCGGTGTGCGGGTGC
CGTCCTTCGCAATCGCCCTGTACACACGCACACAAGCACCCTGA
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