mRNA_Ecto-sp9_F_contig10306.314.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10306.314.1
Unique NamemRNA_Ecto-sp9_F_contig10306.314.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10306.314.1 vs.
Match: Chromatin (structure-remodeling complex subunit snf21-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYV4_PYTIN)

HSP 1 Score: 185 bits (470), Expect = 1.580e-55
Identity = 87/118 (73.73%), Postives = 104/118 (88.14%), Query Frame = 1 
Query:    1 LKGGTLKEYQLQGLQWMVSLYNNNLNGILADEMGLGKTIQTIALLSYLMEVKRNNGPFLVVVPLSTLSNWVNEFSKWAPSALVVTYKGTPSTRRDIQREEMGSGQYNVLLTTYDYVMK 354
            L GG LKEYQL+GLQWMVSLY+N+LNGILADEMGLGKTIQ+I+LL+Y+ E+K N+GPFLVVVPLSTLSNWVNEF +WAP   +V YKG P TR++I R+EM S Q+NVLLTTY+Y+MK
Sbjct:  116 LVGGDLKEYQLRGLQWMVSLYDNHLNGILADEMGLGKTIQSISLLTYVFEIKHNHGPFLVVVPLSTLSNWVNEFKRWAPDLALVVYKGPPQTRKEIFRQEMASCQFNVLLTTYEYIMK 233
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BLAST of mRNA_Ecto-sp9_F_contig10306.314.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4M1_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.270e-54
Identity = 90/118 (76.27%), Postives = 102/118 (86.44%), Query Frame = 1 
Query:    1 LKGGTLKEYQLQGLQWMVSLYNNNLNGILADEMGLGKTIQTIALLSYLMEVKRNNGPFLVVVPLSTLSNWVNEFSKWAPSALVVTYKGTPSTRRDIQREEMGSGQYNVLLTTYDYVMK 354
            LKGG LKEYQL GLQW+VSLYNNNLNGILADEMGLGKTIQTI+L+ YLME K+NNGPFLVVVPLSTLSNWVNEF+KWAP  + V YKG P  R+ + +E + SGQ NVLLTTY+Y+MK
Sbjct:  303 LKGGNLKEYQLTGLQWLVSLYNNNLNGILADEMGLGKTIQTISLVCYLMEYKQNNGPFLVVVPLSTLSNWVNEFNKWAPDVIKVVYKGIPDDRKRLYKEHVESGQLNVLLTTYEYIMK 420
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BLAST of mRNA_Ecto-sp9_F_contig10306.314.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZW3_HETAK)

HSP 1 Score: 185 bits (470), Expect = 2.460e-53
Identity = 88/118 (74.58%), Postives = 102/118 (86.44%), Query Frame = 1 
Query:    1 LKGGTLKEYQLQGLQWMVSLYNNNLNGILADEMGLGKTIQTIALLSYLMEVKRNNGPFLVVVPLSTLSNWVNEFSKWAPSALVVTYKGTPSTRRDIQREEMGSGQYNVLLTTYDYVMK 354
            L GG LKEYQL GL W+V LYNNNLNGILADEMGLGKTIQTIALL +LMEVKR+NGPFLV VPLST+SNWVNEF +WAP  +VV YKG P+ R+ + REEM SGQYNV+LTTY+Y+++
Sbjct:   30 LVGGDLKEYQLAGLAWLVGLYNNNLNGILADEMGLGKTIQTIALLCHLMEVKRDNGPFLVCVPLSTMSNWVNEFVRWAPDIIVVCYKGGPAERKAVYREEMESGQYNVVLTTYEYIIR 147
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BLAST of mRNA_Ecto-sp9_F_contig10306.314.1 vs.
Match: Chromatin (structure-remodeling complex subunit snf21 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUN3_9STRA)

HSP 1 Score: 186 bits (473), Expect = 7.330e-53
Identity = 90/118 (76.27%), Postives = 101/118 (85.59%), Query Frame = 1 
Query:    1 LKGGTLKEYQLQGLQWMVSLYNNNLNGILADEMGLGKTIQTIALLSYLMEVKRNNGPFLVVVPLSTLSNWVNEFSKWAPSALVVTYKGTPSTRRDIQREEMGSGQYNVLLTTYDYVMK 354
            L GG LKEYQL+GLQWMVSLY+N LNGILADEMGLGKTIQ+I+L++Y+ME K NNGPFLVVVPLSTLSNWVNEF KWAP   +V YKG P  RRDI R EM S Q+NVLLTTY+Y+MK
Sbjct:   51 LVGGDLKEYQLRGLQWMVSLYDNRLNGILADEMGLGKTIQSISLVTYIMEFKHNNGPFLVVVPLSTLSNWVNEFRKWAPDITLVVYKGHPQARRDIYRLEMASVQFNVLLTTYEYIMK 168
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BLAST of mRNA_Ecto-sp9_F_contig10306.314.1 vs.
Match: Helicase (ATP-binding domain-containing protein (Fragment) n=1 Tax=Neotoma lepida TaxID=56216 RepID=A0A1A6H292_NEOLE)

HSP 1 Score: 176 bits (447), Expect = 9.170e-53
Identity = 84/118 (71.19%), Postives = 102/118 (86.44%), Query Frame = 1 
Query:    1 LKGGTLKEYQLQGLQWMVSLYNNNLNGILADEMGLGKTIQTIALLSYLMEVKRNNGPFLVVVPLSTLSNWVNEFSKWAPSALVVTYKGTPSTRRDIQREEMGSGQYNVLLTTYDYVMK 354
            L  GTLK YQLQGL+WMVSLYNNNLNGILADEMGLGKTIQTIAL++YLME KR NGP+L++VPLSTLSNW  EF KWAPS + ++YKGTP+ RR +   ++ SG++NVLLTTY+Y++K
Sbjct:  156 LINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV-PQLRSGKFNVLLTTYEYIIK 272
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BLAST of mRNA_Ecto-sp9_F_contig10306.314.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFG0_GLOUD)

HSP 1 Score: 187 bits (475), Expect = 1.000e-52
Identity = 87/118 (73.73%), Postives = 104/118 (88.14%), Query Frame = 1 
Query:    1 LKGGTLKEYQLQGLQWMVSLYNNNLNGILADEMGLGKTIQTIALLSYLMEVKRNNGPFLVVVPLSTLSNWVNEFSKWAPSALVVTYKGTPSTRRDIQREEMGSGQYNVLLTTYDYVMK 354
            L GG LKEYQL+GLQWMVSLY+N+LNGILADEMGLGKTIQ+I+LL+Y+ E+K N+GPFLVVVPLSTLSNWVNEF KWAP  ++V YKG P  R+D+ R+EM S Q+NVLLTTY+Y+MK
Sbjct:  343 LVGGDLKEYQLRGLQWMVSLYDNHLNGILADEMGLGKTIQSISLLTYITEIKHNHGPFLVVVPLSTLSNWVNEFKKWAPDLVLVVYKGPPQVRKDLHRQEMASCQFNVLLTTYEYIMK 460
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BLAST of mRNA_Ecto-sp9_F_contig10306.314.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X1K8_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.150e-52
Identity = 87/118 (73.73%), Postives = 105/118 (88.98%), Query Frame = 1 
Query:    1 LKGGTLKEYQLQGLQWMVSLYNNNLNGILADEMGLGKTIQTIALLSYLMEVKRNNGPFLVVVPLSTLSNWVNEFSKWAPSALVVTYKGTPSTRRDIQREEMGSGQYNVLLTTYDYVMK 354
            L GG LKEYQL+GLQWMVSLY+N+LNGILADEMGLGKTIQ+I+LL+Y+MEVK N+GPFLVVVPLSTLSNWVNEF KWAP  ++V YKG P  R+++ ++EM S Q+NVLLTTY+Y+MK
Sbjct:  379 LVGGDLKEYQLRGLQWMVSLYDNHLNGILADEMGLGKTIQSISLLTYVMEVKHNHGPFLVVVPLSTLSNWVNEFKKWAPDLVLVVYKGPPQARKELHKQEMASCQFNVLLTTYEYIMK 496
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BLAST of mRNA_Ecto-sp9_F_contig10306.314.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C5P4_HYAAE)

HSP 1 Score: 187 bits (474), Expect = 1.360e-52
Identity = 87/118 (73.73%), Postives = 104/118 (88.14%), Query Frame = 1 
Query:    1 LKGGTLKEYQLQGLQWMVSLYNNNLNGILADEMGLGKTIQTIALLSYLMEVKRNNGPFLVVVPLSTLSNWVNEFSKWAPSALVVTYKGTPSTRRDIQREEMGSGQYNVLLTTYDYVMK 354
            L GG LKEYQL+GLQWMVSLY+N+LNGILADEMGLGKTIQ+I+LL+Y+ EVK N+GPFLVVVPLSTLSNWVNEF KWAP  ++V YKG P  R+D+ ++EM S Q+NVLLTTY+Y+MK
Sbjct:  355 LVGGDLKEYQLRGLQWMVSLYDNHLNGILADEMGLGKTIQSISLLTYVTEVKHNHGPFLVVVPLSTLSNWVNEFKKWAPDLVIVVYKGPPQVRKDLHKQEMASCQFNVLLTTYEYIMK 472
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BLAST of mRNA_Ecto-sp9_F_contig10306.314.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7Y6_PYTOL)

HSP 1 Score: 187 bits (474), Expect = 1.390e-52
Identity = 87/118 (73.73%), Postives = 104/118 (88.14%), Query Frame = 1 
Query:    1 LKGGTLKEYQLQGLQWMVSLYNNNLNGILADEMGLGKTIQTIALLSYLMEVKRNNGPFLVVVPLSTLSNWVNEFSKWAPSALVVTYKGTPSTRRDIQREEMGSGQYNVLLTTYDYVMK 354
            L GG LKEYQL+GLQWMVSLY+N+LNGILADEMGLGKTIQ+I+LL+Y+ E+K N+GPFLVVVPLSTLSNWVNEF KWAP  ++V YKG P  R++I R+EM S Q+NVLLTTY+Y+MK
Sbjct:  518 LVGGDLKEYQLRGLQWMVSLYDNHLNGILADEMGLGKTIQSISLLTYIFEIKHNHGPFLVVVPLSTLSNWVNEFKKWAPDLVLVVYKGPPQVRKEIHRQEMASCQFNVLLTTYEYIMK 635
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BLAST of mRNA_Ecto-sp9_F_contig10306.314.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V1F3_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.140e-52
Identity = 82/112 (73.21%), Postives = 98/112 (87.50%), Query Frame = 1 
Query:   19 KEYQLQGLQWMVSLYNNNLNGILADEMGLGKTIQTIALLSYLMEVKRNNGPFLVVVPLSTLSNWVNEFSKWAPSALVVTYKGTPSTRRDIQREEMGSGQYNVLLTTYDYVMK 354
            KEYQ+ GLQWMVSLYNN LNGILADEMGLGKTIQ I+L+ YLME K N GP+LV+VPLSTLSNWVNEF+KW PSA VV YKGTP+ RRD+ ++ + +GQ+NVLLTTY+YV++
Sbjct:    1 KEYQIAGLQWMVSLYNNKLNGILADEMGLGKTIQAISLIGYLMEFKENLGPYLVIVPLSTLSNWVNEFAKWVPSARVVAYKGTPAQRRDLFKDAIRNGQFNVLLTTYEYVIR 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10306.314.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Chromatin1.580e-5573.73structure-remodeling complex subunit snf21-like pr... [more]
Hypothetical1.270e-5476.27protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Hypothetical2.460e-5374.58protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Chromatin7.330e-5376.27structure-remodeling complex subunit snf21 (Fragme... [more]
Helicase9.170e-5371.19ATP-binding domain-containing protein (Fragment) n... [more]
Uncharacterized1.000e-5273.73protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized1.150e-5273.73protein (Fragment) n=1 Tax=Nothophytophthora sp. C... [more]
Uncharacterized1.360e-5273.73protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Uncharacterized1.390e-5273.73protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical2.140e-5273.21protein (Fragment) n=1 Tax=Grammatophora oceanica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10306contigEcto-sp9_F_contig10306:9..1199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2.3e-46
Seed eggNOG ortholog115417.EPrPW00000022543
Preferred nameSMARCA4
KEGG koko:K11647,ko:K11786
KEGG Pathwayko04714,ko05225,map04714,map05225
GOsGO:0000003,GO:0000086,GO:0000122,GO:0000166,GO:0000182,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000791,GO:0000792,GO:0000902,GO:0000904,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0000988,GO:0000990,GO:0000991,GO:0001012,GO:0001013,GO:0001046,GO:0001047,GO:0001067,GO:0001085,GO:0001101,GO:0001102,GO:0001163,GO:0001164,GO:0001188,GO:0001221,GO:0001223,GO:0001558,GO:0001568,GO:0001570,GO:0001654,GO:0001701,GO:0001709,GO:0001824,GO:0001832,GO:0001835,GO:0001889,GO:0001944,GO:0002009,GO:0002039,GO:0002064,GO:0002088,GO:0002165,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003006,GO:0003007,GO:0003151,GO:0003205,GO:0003206,GO:0003231,GO:0003279,GO:0003281,GO:0003407,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003690,GO:0003712,GO:0003713,GO:0003714,GO:0003824,GO:0004003,GO:0004386,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005719,GO:0005726,GO:0005730,GO:0005856,GO:0005975,GO:0005984,GO:0005985,GO:0005987,GO:0006066,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006302,GO:0006304,GO:0006305,GO:0006306,GO:0006310,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006337,GO:0006338,GO:0006342,GO:0006346,GO:0006351,GO:0006352,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006360,GO:0006361,GO:0006366,GO:0006368,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006974,GO:0006996,GO:0007010,GO:0007049,GO:0007059,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007346,GO:0007389,GO:0007399,GO:0007403,GO:0007406,GO:0007409,GO:0007417,GO:0007420,GO:0007423,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007478,GO:0007480,GO:0007507,GO:0007552,GO:0007560,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008285,GO:0008544,GO:0008586,GO:0008587,GO:0009056,GO:0009058,GO:0009059,GO:0009266,GO:0009267,GO:0009311,GO:0009313,GO:0009408,GO:0009414,GO:0009415,GO:0009605,GO:0009628,GO:0009651,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009826,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009913,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010001,GO:0010015,GO:0010033,GO:0010035,GO:0010073,GO:0010074,GO:0010078,GO:0010154,GO:0010162,GO:0010231,GO:0010424,GO:0010431,GO:0010453,GO:0010455,GO:0010467,GO:0010468,GO:0010492,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010721,GO:0010810,GO:0010811,GO:0010941,GO:0010948,GO:0010959,GO:0015616,GO:0016043,GO:0016049,GO:0016052,GO:0016070,GO:0016358,GO:0016458,GO:0016462,GO:0016514,GO:0016569,GO:0016570,GO:0016573,GO:0016584,GO:0016586,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019221,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0019953,GO:0021700,GO:0021781,GO:0022008,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0022611,GO:0022622,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030097,GO:0030099,GO:0030111,GO:0030154,GO:0030155,GO:0030177,GO:0030182,GO:0030198,GO:0030216,GO:0030218,GO:0030308,GO:0030326,GO:0030334,GO:0030554,GO:0030855,GO:0030900,GO:0030902,GO:0030957,GO:0031055,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031347,GO:0031490,GO:0031491,GO:0031492,GO:0031494,GO:0031496,GO:0031497,GO:0031498,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032259,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032776,GO:0032879,GO:0032984,GO:0032986,GO:0032989,GO:0032990,GO:0032991,GO:0033143,GO:0033144,GO:0033554,GO:0033613,GO:0034097,GO:0034101,GO:0034198,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0034756,GO:0035060,GO:0035107,GO:0035108,GO:0035113,GO:0035114,GO:0035116,GO:0035120,GO:0035137,GO:0035172,GO:0035188,GO:0035218,GO:0035220,GO:0035239,GO:0035257,GO:0035258,GO:0035295,GO:0035639,GO:0035821,GO:0035886,GO:0035887,GO:0035904,GO:0036003,GO:0036094,GO:0036211,GO:0036335,GO:0038111,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040029,GO:0042058,GO:0042063,GO:0042127,GO:0042148,GO:0042221,GO:0042330,GO:0042393,GO:0042592,GO:0042594,GO:0042623,GO:0042692,GO:0042766,GO:0042981,GO:0043009,GO:0043010,GO:0043044,GO:0043062,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0043388,GO:0043412,GO:0043414,GO:0043543,GO:0043565,GO:0043588,GO:0043618,GO:0043620,GO:0043696,GO:0043697,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0043933,GO:0043966,GO:0043974,GO:0044085,GO:0044093,GO:0044107,GO:0044109,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044267,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044728,GO:0044770,GO:0044772,GO:0044839,GO:0044877,GO:0045088,GO:0045111,GO:0045165,GO:0045595,GO:0045596,GO:0045597,GO:0045742,GO:0045785,GO:0045786,GO:0045814,GO:0045892,GO:0045893,GO:0045926,GO:0045927,GO:0045930,GO:0045934,GO:0045935,GO:0045943,GO:0045944,GO:0046164,GO:0046352,GO:0046483,GO:0046782,GO:0047485,GO:0048232,GO:0048316,GO:0048364,GO:0048468,GO:0048477,GO:0048507,GO:0048513,GO:0048514,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048534,GO:0048562,GO:0048563,GO:0048568,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048730,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048812,GO:0048813,GO:0048844,GO:0048856,GO:0048858,GO:0048869,GO:0048872,GO:0050434,GO:0050681,GO:0050767,GO:0050768,GO:0050776,GO:0050789,GO:0050792,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051090,GO:0051091,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051145,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051276,GO:0051321,GO:0051427,GO:0051702,GO:0051704,GO:0051716,GO:0051726,GO:0051817,GO:0051851,GO:0051960,GO:0051961,GO:0052312,GO:0052472,GO:0060037,GO:0060041,GO:0060173,GO:0060216,GO:0060255,GO:0060284,GO:0060318,GO:0060322,GO:0060343,GO:0060347,GO:0060429,GO:0060548,GO:0060560,GO:0060562,GO:0060765,GO:0060766,GO:0060840,GO:0060976,GO:0061008,GO:0061061,GO:0061383,GO:0061384,GO:0061412,GO:0061458,GO:0061564,GO:0061587,GO:0061626,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070182,GO:0070306,GO:0070307,GO:0070577,GO:0070603,GO:0070784,GO:0070786,GO:0070887,GO:0070897,GO:0070983,GO:0071103,GO:0071310,GO:0071345,GO:0071496,GO:0071564,GO:0071565,GO:0071684,GO:0071695,GO:0071704,GO:0071824,GO:0071840,GO:0072091,GO:0072358,GO:0072359,GO:0080090,GO:0080134,GO:0090033,GO:0090304,GO:0097159,GO:0097367,GO:0097437,GO:0097458,GO:0097485,GO:0097659,GO:0098727,GO:0098760,GO:0098761,GO:0099402,GO:0120036,GO:0120039,GO:0140030,GO:0140033,GO:0140097,GO:0140110,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1900390,GO:1900393,GO:1900400,GO:1900428,GO:1900430,GO:1901184,GO:1901186,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901700,GO:1901836,GO:1901838,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902659,GO:1902661,GO:1902679,GO:1902680,GO:1902692,GO:1902806,GO:1902807,GO:1902893,GO:1902895,GO:1903047,GO:1903506,GO:1903507,GO:1903508,GO:1904837,GO:1904949,GO:1905392,GO:1990837,GO:1990928,GO:2000026,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000145,GO:2000177,GO:2000178,GO:2000217,GO:2000219,GO:2000241,GO:2000243,GO:2000647,GO:2000648,GO:2001141
EggNOG free text desc.Chromatin structure-remodeling complex subunit snf21. Source PGD
EggNOG OGs1ME4Q@121069,COG0553@1,KOG0386@2759
COG Functional cat.BK
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size354
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10306.314.1prot_Ecto-sp9_F_contig10306.314.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10306 9..1199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928231.8381295-CDS-Ecto-sp9_F_contig10306:8..2121622928231.8381295-CDS-Ecto-sp9_F_contig10306:8..212Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10306 9..212 -
1692277803.9765108-CDS-Ecto-sp9_F_contig10306:8..2121692277803.9765108-CDS-Ecto-sp9_F_contig10306:8..212Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10306 9..212 -
1622928231.8638752-CDS-Ecto-sp9_F_contig10306:871..9701622928231.8638752-CDS-Ecto-sp9_F_contig10306:871..970Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10306 872..970 -
1692277804.0349956-CDS-Ecto-sp9_F_contig10306:871..9701692277804.0349956-CDS-Ecto-sp9_F_contig10306:871..970Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10306 872..970 -
1622928231.876462-CDS-Ecto-sp9_F_contig10306:1148..11991622928231.876462-CDS-Ecto-sp9_F_contig10306:1148..1199Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10306 1149..1199 -
1692277804.0463674-CDS-Ecto-sp9_F_contig10306:1148..11991692277804.0463674-CDS-Ecto-sp9_F_contig10306:1148..1199Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10306 1149..1199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10306.314.1

>prot_Ecto-sp9_F_contig10306.314.1 ID=prot_Ecto-sp9_F_contig10306.314.1|Name=mRNA_Ecto-sp9_F_contig10306.314.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp
LKGGTLKEYQLQGLQWMVSLYNNNLNGILADEMGLGKTIQTIALLSYLME
VKRNNGPFLVVVPLSTLSNWVNEFSKWAPSALVVTYKGTPSTRRDIQREE
MGSGQYNVLLTTYDYVMK
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mRNA from alignment at Ecto-sp9_F_contig10306:9..1199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10306.314.1 ID=mRNA_Ecto-sp9_F_contig10306.314.1|Name=mRNA_Ecto-sp9_F_contig10306.314.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1191bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10306:9..1199- (Ectocarpus species9 EcSCA_722f female)
CTGAAGGGGGGCACGCTCAAGGAGTACCAGCTGCAGGGCCTCCAATGGAT
GGTACGGAGAGTTGCTACTGTTACTGAGTCCATTGCGTCAAGAACAAGTT
CTGTTTTATGTTCTAGACTTATCCCAATATCAGTTCATTTTTGTTGGAAC
AAATTTATTGTACTAGACTGCTCTCTTACCCCAATCTCAACTTTTTTTTT
TTTTGTCTTTTTTTTTTTTTCCCCTGCAGGTGTCTTTGTACAACAACAAC
CTCAACGGCATCCTGGCTGATGAGATGGGCCTGGGCAAGACCATCCAGAC
CATCGCGCTCCTTTCCTACCTCATGGAGGTACAGACTTAGATTGCCGGTG
GAAAGAGTCGCTGCTGCTGTTATTGTTGTTGTTCAAATTTGAATGGTCTC
GTTGCCGTACCTCATTTGCCGATTAATTTTCCACTGTTTGTCCGTGTTTT
GGAAAGAAACTGGACAAAACTATGATGAATAACGATCATCGCCTGCATAC
GCAGAATGATATTGCCTATTCAGCCAAAATTAAGCTAGTGGGGAAATGAA
ACCGCTATTCTTCGCTGCTGGTTTCGTTGTTTGTTGTTTGCCGGGGAGGG
GAGGGGGGGGGGGTTGTATGAGAAAGAGAGGCGTCTGCGATTGGCGTTCT
CCTCCTCGTTGCCCAAGTTTTACTGGCTTTTGTTCCGCAAAGTCGGTCAA
ATTTTTGACAAAGAACGGGAAAATCGATATGAGAGGTTATTTGCATATTC
TAAAGCTAAATTATTACTGGAAGCACCACAGATCCGGCCATTTTGCCCAG
ATTTAATCAAGTGCTGCGGGCCCGAGCGAACACATTGCTTGTGCCTTTGT
CGAACATCACCCCCCACGCCACTGGCACGATTGTCCTGTCCAGCGATACT
CGTAAATTTACCCCGCATCCACGTGCGCCGCACTTCTCTCTCTCCCTCAC
ACACACACACACACAATAAACGCGGCGTAACAAACAGGTGAAGCGGAACA
ACGGACCGTTTCTGGTGGTGGTGCCCCTGTCCACCCTGTCAAACTGGGTG
AACGAGTTCTCGAAGTGGGCACCCTCCGCTCTGGTGGTGACGTACAAGGG
GACCCCGTCAACGAGGAGGGACATCCAGAGGGAGGAGATGGGGTCCGGGC
AGTACAACGTGCTCCTCACCACCTACGACTACGTCATGAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10306:9..1199-

>mRNA_Ecto-sp9_F_contig10306.314.1 ID=mRNA_Ecto-sp9_F_contig10306.314.1|Name=mRNA_Ecto-sp9_F_contig10306.314.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10306:9..1199- (Ectocarpus species9 EcSCA_722f female)
CTGAAGGGGGGCACGCTCAAGGAGTACCAGCTGCAGGGCCTCCAATGGAT
GCTGAAGGGGGGCACGCTCAAGGAGTACCAGCTGCAGGGCCTCCAATGGA
TGGTGTCTTTGTACAACAACAACCTCAACGGCATCCTGGCTGATGAGATG
GGCCTGGGCAAGACCATCCAGACCATCGCGCTCCTTTCCTACCTCATGGA
GGTGTCTTTGTACAACAACAACCTCAACGGCATCCTGGCTGATGAGATGG
GCCTGGGCAAGACCATCCAGACCATCGCGCTCCTTTCCTACCTCATGGAG
GTGAAGCGGAACAACGGACCGTTTCTGGTGGTGGTGCCCCTGTCCACCCT
GTCAAACTGGGTGAACGAGTTCTCGAAGTGGGCACCCTCCGCTCTGGTGG
TGACGTACAAGGGGACCCCGTCAACGAGGAGGGACATCCAGAGGGAGGAG
ATGGGGTCCGGGCAGTACAACGTGCTCCTCACCACCTACGACTACGTCAT
GAAGGTGAAGCGGAACAACGGACCGTTTCTGGTGGTGGTGCCCCTGTCCA
CCCTGTCAAACTGGGTGAACGAGTTCTCGAAGTGGGCACCCTCCGCTCTG
GTGGTGACGTACAAGGGGACCCCGTCAACGAGGAGGGACATCCAGAGGGA
GGAGATGGGGTCCGGGCAGTACAACGTGCTCCTCACCACCTACGACTACG
TCATGAAG
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