prot_Ecto-sp9_F_contig1030.310.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig1030.310.1
Unique Nameprot_Ecto-sp9_F_contig1030.310.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length119
Homology
BLAST of mRNA_Ecto-sp9_F_contig1030.310.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 5.130e-50
Identity = 106/198 (53.54%), Postives = 112/198 (56.57%), Query Frame = 0
Query:    1 MSCLAIRISRVKDAFNLREELCCVFIGCSCCV-----IQVLVELEIWSNTSALHVVVEVQALLVGMNSGISGLLLPMVRAHRGGVQAWFRASA--------------------------------------------------------------------------HILNHYLLPTSPDEINISSAMQKRIAPFRTR 119
            MSCLAIRISRV DAF LREELC VFIGCSCCV     IQVLVELE+ S+TSALHVVVEVQALL+GMN G+SGLLLPMVRAHRGGV+AWFRA+                                                                           HILNHYLLPTSPDEINISSAM KRIAPFRTR
Sbjct:   88 MSCLAIRISRVHDAFKLREELCFVFIGCSCCVAVLWVIQVLVELELLSDTSALHVVVEVQALLIGMNIGLSGLLLPMVRAHRGGVKAWFRATVVPVDETVAVSALDVDGVVGLASSGGEMAEQFGKFCRENLCMESWDFLVDVVRYERMAPSPIARNPEDEQFNCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 285          
BLAST of mRNA_Ecto-sp9_F_contig1030.310.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE83_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.210e-42
Identity = 103/230 (44.78%), Postives = 111/230 (48.26%), Query Frame = 0
Query:    1 MSCLAIRISRVKDAFNLREELCCVFIGCSCC-----VIQVLVELEIWSNTSALHVVVEVQALLVGMNSGISGLLLPMVRAHRGGVQAWFRASA----------------------------------------------------------------------------------------------------------HILNHYLLPTSPDEINISSAMQKRIAPFRTR 119
            MSCLAIRISRV DAF +REELC VFIGCSCC     VIQVLVEL++ S+TSALHVVV+VQALL+GMN GISGLLLPMVR HRGGV+AWFRA+                                                                                                           HILNHYLLPTSPDEINISSAM KRIAPFRTR
Sbjct:  214 MSCLAIRISRVNDAFKIREELCFVFIGCSCCAAVLWVIQVLVELDLLSDTSALHVVVQVQALLIGMNIGISGLLLPMVRTHRGGVKAWFRATVVPVDETVAVSALDVDGVVGLASSVGEMAEQFGKFCRENLCMESWDLLVDVVRYERMVPSPSNIFCRVGFDTRWSCLWNFSHPNGLTWFVRFADRENPEDEQLKCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 443          
BLAST of mRNA_Ecto-sp9_F_contig1030.310.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY9_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.860e-36
Identity = 77/124 (62.10%), Postives = 89/124 (71.77%), Query Frame = 0
Query:    1 MSCLAIRISRVKDAFNLREELCCVFIGCS-----CCVIQVLVELEIWSNTSALHVVVEVQALLVGMNSGISGLLLPMVRAHRGGVQAWFRASAHILNHYLLPTSPDEINISSAMQKRIAPFRTR 119
            +S L IRISRV DAF LREELC   +GCS       VIQVLVELE+W +T ALHVVVEV  LL+GMN+G  GLLLPM+ +     +  F +  +ILN YLLPTSPDEINISSAM K +A FRTR
Sbjct:   81 VSLLVIRISRVNDAFQLREELCRTIMGCSGIAVILWVIQVLVELEVWPDTPALHVVVEVLILLLGMNAGYWGLLLPMMSSP----EEQFNSFLYILNQYLLPTSPDEINISSAMSKHMATFRTR 200          
BLAST of mRNA_Ecto-sp9_F_contig1030.310.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.030e-5
Identity = 41/128 (32.03%), Postives = 43/128 (33.59%), Query Frame = 0
Query:   66 SGLLLPMVRAHRGGVQAWFRASA--------------------------------------------------------------------------HILNHYLLPTSPDEINISSAMQKRIAPFRTR 119
            S LLLPM RAHRGGVQ WFRA+                                                                            ILN YLLPTSPDEINISS+M  RI  F TR
Sbjct:   58 SSLLLPMARAHRGGVQEWFRATVVPVEEVFTVQASDECGVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVRYERIAPSLVANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRILAFGTR 185          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1030.310.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
RGS5.130e-5053.54domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RGS1.210e-4244.78domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.860e-3662.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
RGS3.030e-532.03domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 74..119
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..53
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..73
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 48..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1030contigEcto-sp9_F_contig1030:12939..14641 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1030.310.1mRNA_Ecto-sp9_F_contig1030.310.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig1030 12939..15451 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig1030.310.1 ID=prot_Ecto-sp9_F_contig1030.310.1|Name=mRNA_Ecto-sp9_F_contig1030.310.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
MSCLAIRISRVKDAFNLREELCCVFIGCSCCVIQVLVELEIWSNTSALHV
VVEVQALLVGMNSGISGLLLPMVRAHRGGVQAWFRASAHILNHYLLPTSP
DEINISSAMQKRIAPFRTR
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