mRNA_Ecto-sp9_F_contig1030.308.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1030.308.1
Unique NamemRNA_Ecto-sp9_F_contig1030.308.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1030.308.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP78_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.010e-15
Identity = 62/141 (43.97%), Postives = 77/141 (54.61%), Query Frame = 1 
Query:    1 CNEGCHFAGVSKKDRLTPLFPRVRAAPPLSQALDEVLNK-----------------------EP-------EGEQDAHKARLGVQAGSDSAAAAIRPAGETAMSRRQAKKAKEVKCLRLEVVALTEARELEQRKEEEKWCK 333
            C  GC FA VSKKDR TP FP VRAAPPL QA  +V  +                       +P       E EQ AHKA LGVQ G ++AAAA R A E A++RRQA+K K V+  +LE+  L  AR+  QRK +++  K
Sbjct:  181 CCTGCQFAAVSKKDRSTPPFPLVRAAPPLFQAWYQVPRRACCWVCARDDARMQLIFFAADPCDPPIPGAGREAEQAAHKASLGVQPGWEAAAAATRAAEEAAIARRQARKIKAVENRQLELAELANARQHAQRKADKEEAK 321
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BLAST of mRNA_Ecto-sp9_F_contig1030.308.1 vs.
Match: SWIM-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.670e-5
Identity = 25/33 (75.76%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 CNEGCHFAGVSKKDRLTPLFPRVRAAPPLSQAL 99
            C  G HFA VSKKDR TP FP VRAAPPL QAL
Sbjct:  216 CPRGVHFAAVSKKDRSTPPFPLVRAAPPLFQAL 248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1030.308.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.010e-1543.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
SWIM-type2.670e-575.76domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1030contigEcto-sp9_F_contig1030:6114..6607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_002160.1
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928231.2552693-CDS-Ecto-sp9_F_contig1030:6114..63601622928231.2552693-CDS-Ecto-sp9_F_contig1030:6114..6360Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 6115..6360 -
1692277803.778488-CDS-Ecto-sp9_F_contig1030:6114..63601692277803.778488-CDS-Ecto-sp9_F_contig1030:6114..6360Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 6115..6360 -
1622928231.306779-CDS-Ecto-sp9_F_contig1030:6508..66071622928231.306779-CDS-Ecto-sp9_F_contig1030:6508..6607Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 6509..6607 -
1692277803.78882-CDS-Ecto-sp9_F_contig1030:6508..66071692277803.78882-CDS-Ecto-sp9_F_contig1030:6508..6607Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1030 6509..6607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1030.308.1prot_Ecto-sp9_F_contig1030.308.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1030 6115..6607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1030.308.1

>prot_Ecto-sp9_F_contig1030.308.1 ID=prot_Ecto-sp9_F_contig1030.308.1|Name=mRNA_Ecto-sp9_F_contig1030.308.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
CNEGCHFAGVSKKDRLTPLFPRVRAAPPLSQALDEVLNKEPEGEQDAHKA
RLGVQAGSDSAAAAIRPAGETAMSRRQAKKAKEVKCLRLEVVALTEAREL
EQRKEEEKWCKHDEG
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mRNA from alignment at Ecto-sp9_F_contig1030:6114..6607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1030.308.1 ID=mRNA_Ecto-sp9_F_contig1030.308.1|Name=mRNA_Ecto-sp9_F_contig1030.308.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=494bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1030:6114..6607- (Ectocarpus species9 EcSCA_722f female)
TGCAATGAAGGATGCCACTTCGCTGGGGTCTCGAAGAAGGACCGCTTGAC
CCCTCTGTTTCCTCGCGTCAGGGCAGCACCCCCGTTGTCCCAAGCGCTGG
TGAGTCGCTGCCCATATAGAGTAGATTGCTTGGCAAGTTCAAGACGGCGA
AGCTCGCATGTTGTACATGCTAGTGGTCTACACCCGAGACGCAGGGGTTT
TGTCGCTCACCCGGTGCCTCTTGCAATACTTCCACCCGCGTATGCAGGAC
GAAGTTCTGAACAAGGAGCCCGAGGGTGAACAAGACGCGCACAAGGCGAG
GCTAGGAGTGCAGGCCGGTTCGGACTCTGCAGCGGCGGCGATAAGACCGG
CGGGTGAAACTGCTATGTCTAGGCGGCAGGCGAAGAAGGCGAAAGAAGTT
AAATGCTTGCGGCTGGAGGTAGTAGCGCTTACGGAAGCAAGGGAGCTTGA
ACAGCGCAAGGAGGAGGAGAAATGGTGTAAGCACGATGAAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1030:6114..6607-

>mRNA_Ecto-sp9_F_contig1030.308.1 ID=mRNA_Ecto-sp9_F_contig1030.308.1|Name=mRNA_Ecto-sp9_F_contig1030.308.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1030:6114..6607- (Ectocarpus species9 EcSCA_722f female)
TGCAATGAAGGATGCCACTTCGCTGGGGTCTCGAAGAAGGACCGCTTGAC
CCCTCTGTTTCCTCGCGTCAGGGCAGCACCCCCGTTGTCCCAAGCGCTGT
GCAATGAAGGATGCCACTTCGCTGGGGTCTCGAAGAAGGACCGCTTGACC
CCTCTGTTTCCTCGCGTCAGGGCAGCACCCCCGTTGTCCCAAGCGCTGGA
CGAAGTTCTGAACAAGGAGCCCGAGGGTGAACAAGACGCGCACAAGGCGA
GGCTAGGAGTGCAGGCCGGTTCGGACTCTGCAGCGGCGGCGATAAGACCG
GCGGGTGAAACTGCTATGTCTAGGCGGCAGGCGAAGAAGGCGAAAGAAGT
TAAATGCTTGCGGCTGGAGGTAGTAGCGCTTACGGAAGCAAGGGAGCTTG
AACAGCGCAAGGAGGAGGAGAAATGGTGTAAGCACGATGAAGGGGACGAA
GTTCTGAACAAGGAGCCCGAGGGTGAACAAGACGCGCACAAGGCGAGGCT
AGGAGTGCAGGCCGGTTCGGACTCTGCAGCGGCGGCGATAAGACCGGCGG
GTGAAACTGCTATGTCTAGGCGGCAGGCGAAGAAGGCGAAAGAAGTTAAA
TGCTTGCGGCTGGAGGTAGTAGCGCTTACGGAAGCAAGGGAGCTTGAACA
GCGCAAGGAGGAGGAGAAATGGTGTAAGCACGATGAAGGG
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