mRNA_Ecto-sp9_F_contig10269.278.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10269.278.1
Unique NamemRNA_Ecto-sp9_F_contig10269.278.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10269.278.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.230e-11
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = -2 
Query:  222 QDDPSSSRPLPERARAGTMAENEAKSNGGDSSPVSEDLAAGGGEDGILSPLLVEE 386
            QDDPSSSRPLPERARAGTMAENEA+SNG   SPVSE   AGGG+D   SPLL EE
Sbjct:  596 QDDPSSSRPLPERARAGTMAENEARSNGASFSPVSEG-PAGGGDDRNPSPLLREE 649
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10269.278.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.230e-1178.18protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10269contigEcto-sp9_F_contig10269:1156..1648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928223.5356448-CDS-Ecto-sp9_F_contig10269:1155..16471622928223.5356448-CDS-Ecto-sp9_F_contig10269:1155..1647Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10269 1156..1647 +
1692277801.7402823-CDS-Ecto-sp9_F_contig10269:1155..16471692277801.7402823-CDS-Ecto-sp9_F_contig10269:1155..1647Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10269 1156..1647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10269.278.1prot_Ecto-sp9_F_contig10269.278.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10269 1156..1647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10269.278.1

>prot_Ecto-sp9_F_contig10269.278.1 ID=prot_Ecto-sp9_F_contig10269.278.1|Name=mRNA_Ecto-sp9_F_contig10269.278.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=164bp
AASSRRTGDRSPFSPPAAAGPSEAGDGTAPLLLPSFAASCRRIGDRFPSS
PPVAVGPSEAGDGIAPLLLASSVVSSTRRGDRIPSSPPPAARSSETGDES
PPLLFASFSAIVPALARSGSGRELEGSSCSPRAVVSPGRRRDGMLSSPPP
PPLSPRVPCVGDDD
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mRNA from alignment at Ecto-sp9_F_contig10269:1156..1648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10269.278.1 ID=mRNA_Ecto-sp9_F_contig10269.278.1|Name=mRNA_Ecto-sp9_F_contig10269.278.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=493bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10269:1156..1648+ (Ectocarpus species9 EcSCA_722f female)
GCCGCCTCTTCCAGAAGAACAGGGGACAGGTCTCCGTTCTCCCCCCCCGC
TGCCGCCGGACCCTCGGAAGCCGGCGACGGAACGGCACCATTGCTTTTAC
CCTCTTTCGCCGCCTCTTGCAGAAGAATAGGGGACAGGTTTCCATCCTCC
CCCCCCGTTGCCGTCGGACCCTCGGAAGCCGGCGACGGAATCGCACCATT
GCTTCTAGCCTCTTCCGTCGTCTCTTCCACAAGAAGAGGGGACAGGATTC
CATCCTCCCCGCCCCCCGCCGCTAGATCCTCGGAAACCGGCGACGAATCG
CCACCATTACTTTTTGCCTCGTTCTCCGCCATCGTCCCCGCTCTGGCGCG
CTCCGGTAGCGGGCGAGAGCTCGAAGGGTCGTCCTGTTCCCCCCGCGCGG
TTGTCTCGCCAGGTAGGAGGAGGGATGGAATGCTATCCTCCCCCCCGCCG
CCGCCGCTCTCACCGCGAGTTCCTTGCGTTGGAGATGATGACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10269:1156..1648+

>mRNA_Ecto-sp9_F_contig10269.278.1 ID=mRNA_Ecto-sp9_F_contig10269.278.1|Name=mRNA_Ecto-sp9_F_contig10269.278.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10269:1156..1648+ (Ectocarpus species9 EcSCA_722f female)
GCCGCCTCTTCCAGAAGAACAGGGGACAGGTCTCCGTTCTCCCCCCCCGC
TGCCGCCGGACCCTCGGAAGCCGGCGACGGAACGGCACCATTGCTTTTAC
CCTCTTTCGCCGCCTCTTGCAGAAGAATAGGGGACAGGTTTCCATCCTCC
CCCCCCGTTGCCGTCGGACCCTCGGAAGCCGGCGACGGAATCGCACCATT
GCTTCTAGCCTCTTCCGTCGTCTCTTCCACAAGAAGAGGGGACAGGATTC
CATCCTCCCCGCCCCCCGCCGCTAGATCCTCGGAAACCGGCGACGAATCG
CCACCATTACTTTTTGCCTCGTTCTCCGCCATCGTCCCCGCTCTGGCGCG
CTCCGGTAGCGGGCGAGAGCTCGAAGGGTCGTCCTGTTCCCCCCGCGCGG
TTGTCTCGCCAGGTAGGAGGAGGGATGGAATGCTATCCTCCCCCCCGCCG
CCGCCGCTCTCACCGCGAGTTCCTTGCGTTGGAGATGATGACGCCGCCTC
TTCCAGAAGAACAGGGGACAGGTCTCCGTTCTCCCCCCCCGCTGCCGCCG
GACCCTCGGAAGCCGGCGACGGAACGGCACCATTGCTTTTACCCTCTTTC
GCCGCCTCTTGCAGAAGAATAGGGGACAGGTTTCCATCCTCCCCCCCCGT
TGCCGTCGGACCCTCGGAAGCCGGCGACGGAATCGCACCATTGCTTCTAG
CCTCTTCCGTCGTCTCTTCCACAAGAAGAGGGGACAGGATTCCATCCTCC
CCGCCCCCCGCCGCTAGATCCTCGGAAACCGGCGACGAATCGCCACCATT
ACTTTTTGCCTCGTTCTCCGCCATCGTCCCCGCTCTGGCGCGCTCCGGTA
GCGGGCGAGAGCTCGAAGGGTCGTCCTGTTCCCCCCGCGCGGTTGTCTCG
CCAGGTAGGAGGAGGGATGGAATGCTATCCTCCCCCCCGCCGCCGCCGCT
CTCACCGCGAGTTCCTTGCGTTGGAGATGATGAC
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