mRNA_Ecto-sp9_F_contig1024.262.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1024.262.1
Unique NamemRNA_Ecto-sp9_F_contig1024.262.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1024.262.1 vs.
Match: ABC (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L581_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.350e-49
Identity = 117/148 (79.05%), Postives = 119/148 (80.41%), Query Frame = -1 
Query:    1 QLAPDNPKAWRALADFLETGNDNKQLAEALSKCVDIAESKGNYGRSRPLRLRLSEVREAAGDRRGALAALKAFTSNPAAVSATTASAANGAGP----ADKKNXXXXXXXXXXXXXXXX----EAVRDTENAAMKDRSTRLFMELNADL 420
            +LAPDNPKAWRALADFLETGNDNKQLAEALSKCVDIAESKGNYGRSRPLRLRLSEVREAAGDRRGALAALKAFTSNPAA+S                 DKKN      XXXXXX  XX    EAVRDTENAAMKDRSTRLFMELNADL
Sbjct:   46 KLAPDNPKAWRALADFLETGNDNKQLAEALSKCVDIAESKGNYGRSRPLRLRLSEVREAAGDRRGALAALKAFTSNPAAMSXXXXXXXXXXXXXXXXVDKKNASAAAKXXXXXXTDXXXXXAEAVRDTENAAMKDRSTRLFMELNADL 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1024.262.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
ABC1.350e-4979.05protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1024contigEcto-sp9_F_contig1024:2178..2906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size731
Cds size630
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928220.190904-CDS-Ecto-sp9_F_contig1024:2177..28071622928220.190904-CDS-Ecto-sp9_F_contig1024:2177..2807Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 2178..2807 +
1692277800.4089718-CDS-Ecto-sp9_F_contig1024:2177..28071692277800.4089718-CDS-Ecto-sp9_F_contig1024:2177..2807Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 2178..2807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928220.2017543-UTR-Ecto-sp9_F_contig1024:2807..29061622928220.2017543-UTR-Ecto-sp9_F_contig1024:2807..2906Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1024 2808..2906 +
1692277800.4188185-UTR-Ecto-sp9_F_contig1024:2807..29061692277800.4188185-UTR-Ecto-sp9_F_contig1024:2807..2906Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1024 2808..2906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1024.262.1prot_Ecto-sp9_F_contig1024.262.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1024 2178..2807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1024.262.1

>prot_Ecto-sp9_F_contig1024.262.1 ID=prot_Ecto-sp9_F_contig1024.262.1|Name=mRNA_Ecto-sp9_F_contig1024.262.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=210bp
KVSVQLHEEPRGAVLHGRVFRVPDCLRGLGRRVGGGLSGGGGVFLVGGAG
AVRRRCGRRGDGRRVRGEGLEGGEGAAAVAGGLADLGEAEPEGAGAAVVP
LALRDVDALGQGLGQLLVVVAGLEEVCEGSPRLGVVGCQLHVRLVRRGTA
AGGSQASLAKGDRYKRTHVNYTPRNYCHVRDRREMWNVLWNVVHGEEALK
PRVLLCACG*
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mRNA from alignment at Ecto-sp9_F_contig1024:2178..2906+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1024.262.1 ID=mRNA_Ecto-sp9_F_contig1024.262.1|Name=mRNA_Ecto-sp9_F_contig1024.262.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=729bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1024:2178..2906+ (Ectocarpus species9 EcSCA_722f female)
AAGGTCAGCGTTCAGCTCCATGAAGAGCCGCGTGGAGCGGTCCTTCATGG
CCGCGTTTTCCGTGTCCCGGACTGCCTCCGCGGCCTTGGTCGCCGCGTCG
GCGGCGGCCTTAGCGGCGGCGGAGGCGTTTTTCTTGTCGGCGGGGCCGGC
GCCGTTCGCCGCCGATGCGGTCGTCGCGGAGACGGCCGCCGGGTTCGAGG
TGAAGGCCTTGAGGGCGGCGAGGGCGCCGCGGCGGTCGCCGGCGGCCTCG
CGGACCTCGGAGAGGCGGAGCCGGAGGGGGCGGGAGCGGCCGTAGTTCCC
CTTGCTCTCCGCGATGTCGACGCACTTGGACAGGGCCTCGGCCAGCTGCT
TGTTGTCGTTGCCGGTCTCGAGGAAGTCTGCGAGGGCTCGCCACGCCTTG
GGGTTGTCGGGTGCCAGCTGCATGTTCGATTGGTTCGACGAGGCACGGCA
GCGGGTGGGAGCCAGGCTTCGTTGGCGAAGGGAGACCGGTATAAACGCAC
GCATGTAAATTACACCCCTAGGAACTACTGCCATGTCAGGGATAGACGGG
AGATGTGGAACGTTCTTTGGAATGTTGTGCACGGAGAGGAGGCGCTGAAG
CCGCGGGTTTTGCTCTGTGCGTGCGGTTGACATTATCAACAGTCTACAAG
ACGAGAGACAACCATCACGCTGTGCGTGCGGGCAGAGTGCGCGCGTCCTT
GCCGCAAAAGAGGGTAGCAAGACGCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1024:2178..2906+

>mRNA_Ecto-sp9_F_contig1024.262.1 ID=mRNA_Ecto-sp9_F_contig1024.262.1|Name=mRNA_Ecto-sp9_F_contig1024.262.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1024:2178..2906+ (Ectocarpus species9 EcSCA_722f female)
AAGGTCAGCGTTCAGCTCCATGAAGAGCCGCGTGGAGCGGTCCTTCATGG
CCGCGTTTTCCGTGTCCCGGACTGCCTCCGCGGCCTTGGTCGCCGCGTCG
GCGGCGGCCTTAGCGGCGGCGGAGGCGTTTTTCTTGTCGGCGGGGCCGGC
GCCGTTCGCCGCCGATGCGGTCGTCGCGGAGACGGCCGCCGGGTTCGAGG
TGAAGGCCTTGAGGGCGGCGAGGGCGCCGCGGCGGTCGCCGGCGGCCTCG
CGGACCTCGGAGAGGCGGAGCCGGAGGGGGCGGGAGCGGCCGTAGTTCCC
CTTGCTCTCCGCGATGTCGACGCACTTGGACAGGGCCTCGGCCAGCTGCT
TGTTGTCGTTGCCGGTCTCGAGGAAGTCTGCGAGGGCTCGCCACGCCTTG
GGGTTGTCGGGTGCCAGCTGCATGTTCGATTGGTTCGACGAGGCACGGCA
GCGGGTGGGAGCCAGGCTTCGTTGGCGAAGGGAGACCGGTATAAACGCAC
GCATGTAAATTACACCCCTAGGAACTACTGCCATGTCAGGGATAGACGGG
AGATGTGGAACGTTCTTTGGAATGTTGTGCACGGAGAGGAGGCGCTGAAG
CCGCGGGTTTTGCTCTGTGCGTGCGGTTGAAAGGTCAGCGTTCAGCTCCA
TGAAGAGCCGCGTGGAGCGGTCCTTCATGGCCGCGTTTTCCGTGTCCCGG
ACTGCCTCCGCGGCCTTGGTCGCCGCGTCGGCGGCGGCCTTAGCGGCGGC
GGAGGCGTTTTTCTTGTCGGCGGGGCCGGCGCCGTTCGCCGCCGATGCGG
TCGTCGCGGAGACGGCCGCCGGGTTCGAGGTGAAGGCCTTGAGGGCGGCG
AGGGCGCCGCGGCGGTCGCCGGCGGCCTCGCGGACCTCGGAGAGGCGGAG
CCGGAGGGGGCGGGAGCGGCCGTAGTTCCCCTTGCTCTCCGCGATGTCGA
CGCACTTGGACAGGGCCTCGGCCAGCTGCTTGTTGTCGTTGCCGGTCTCG
AGGAAGTCTGCGAGGGCTCGCCACGCCTTGGGGTTGTCGGGTGCCAGCTG
CATGTTCGATTGGTTCGACGAGGCACGGCAGCGGGTGGGAGCCAGGCTTC
GTTGGCGAAGGGAGACCGGTATAAACGCACGCATGTAAATTACACCCCTA
GGAACTACTGCCATGTCAGGGATAGACGGGAGATGTGGAACGTTCTTTGG
AATGTTGTGCACGGAGAGGAGGCGCTGAAGCCGCGGGTTTTGCTCTGTGC
GTGCGGTTGA
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