mRNA_Ecto-sp9_F_contig1023.256.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1023.256.1
Unique NamemRNA_Ecto-sp9_F_contig1023.256.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1023.256.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ23_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 4.140e-89
Identity = 196/218 (89.91%), Postives = 201/218 (92.20%), Query Frame = 1 
Query:    1 MFKRRSSKELSAKIGYDHVNGKASRNTSVPSLPSSTSATNNAVAPVASIPHPGGHLHHKQGSFSSGSSSYRKTTSMPSPEGDSGDDPSA-ERPSPLAALKPLPPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVVAEPPSKSLVIGEGVLFEGATEGCAAAVVGGKLVGTVKSKRLEVTRAGKMDGTAVVEMAEIAGTFEGNLTVTKALKHC 651
            MF+RRSSKELSAKIGYDHVNGKAS+NTSV S+ SST A +NAVAPVASIP PGGHLHHKQGS S GSSS RKTT MPSPE DSG DPSA ERPSPLAALKPLPPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VAEPPS SLVIGEGVLFEGATEGCAAAVVGGKLVGTVKSKRLEVTRAGKM+GTAVVEMAEIAG FEGNLTVTKALK C
Sbjct:    1 MFRRRSSKELSAKIGYDHVNGKASKNTSVSSMSSSTPAASNAVAPVASIPPPGGHLHHKQGSCSPGSSSSRKTTGMPSPEADSGVDPSATERPSPLAALKPLPPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VAEPPSNSLVIGEGVLFEGATEGCAAAVVGGKLVGTVKSKRLEVTRAGKMEGTAVVEMAEIAGAFEGNLTVTKALKIC 216
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BLAST of mRNA_Ecto-sp9_F_contig1023.256.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS04_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 7.410e-8
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 2 
Query:  644 SIASCSLTVSAPAVQLPRVALLHPSLPPAQE 736
            SIASCSLTVSAPAVQLPRVAL+HPSLPPA E
Sbjct:   34 SIASCSLTVSAPAVQLPRVALVHPSLPPAPE 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1023.256.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.140e-8989.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.410e-893.55protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1023contigEcto-sp9_F_contig1023:22283..23417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size774
Cds size774
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.822429-CDS-Ecto-sp9_F_contig1023:22282..229271622928219.822429-CDS-Ecto-sp9_F_contig1023:22282..22927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 22283..22927 +
1692277800.292466-CDS-Ecto-sp9_F_contig1023:22282..229271692277800.292466-CDS-Ecto-sp9_F_contig1023:22282..22927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 22283..22927 +
1622928219.8348415-CDS-Ecto-sp9_F_contig1023:23288..234171622928219.8348415-CDS-Ecto-sp9_F_contig1023:23288..23417Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 23289..23417 +
1692277800.301856-CDS-Ecto-sp9_F_contig1023:23288..234171692277800.301856-CDS-Ecto-sp9_F_contig1023:23288..23417Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 23289..23417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1023.256.1prot_Ecto-sp9_F_contig1023.256.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1023 22283..23417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1023.256.1

>prot_Ecto-sp9_F_contig1023.256.1 ID=prot_Ecto-sp9_F_contig1023.256.1|Name=mRNA_Ecto-sp9_F_contig1023.256.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=258bp
MFKRRSSKELSAKIGYDHVNGKASRNTSVPSLPSSTSATNNAVAPVASIP
HPGGHLHHKQGSFSSGSSSYRKTTSMPSPEGDSGDDPSAERPSPLAALKP
LPPAEQQQQQQQQQQQVISTKAPSKANKSAATAAAAPKVVAEPPSKSLVI
GEGVLFEGATEGCAAAVVGGKLVGTVKSKRLEVTRAGKMDGTAVVEMAEI
AGTFEGNLTVTKALKHCFLLSHGVSSCCPAAPCRASSSLPTSRPRGVEMT
TKNCFKL*
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mRNA from alignment at Ecto-sp9_F_contig1023:22283..23417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1023.256.1 ID=mRNA_Ecto-sp9_F_contig1023.256.1|Name=mRNA_Ecto-sp9_F_contig1023.256.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1135bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1023:22283..23417+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCAAGCGGCGGTCATCCAAGGAGCTGAGCGCCAAGATCGGATACGA
CCATGTCAACGGCAAGGCTTCGAGAAACACGTCCGTGCCTTCCCTGCCCT
CGAGCACCTCCGCCACCAACAACGCCGTCGCCCCGGTGGCCAGCATCCCG
CACCCCGGCGGCCACCTCCACCACAAGCAGGGCTCTTTCTCGTCCGGCTC
GTCCTCCTACCGGAAAACGACCAGCATGCCCTCTCCCGAGGGCGACAGCG
GAGATGACCCGTCCGCCGAGAGGCCCTCCCCGCTAGCGGCGCTCAAGCCA
CTCCCTCCCGCCGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGT
TATCTCGACCAAGGCTCCCAGCAAGGCCAACAAGTCGGCGGCGACGGCGG
CGGCGGCGCCGAAGGTAGTAGCCGAGCCGCCCTCCAAGAGCCTGGTGATC
GGCGAAGGGGTGCTGTTCGAGGGGGCCACGGAAGGTTGCGCGGCGGCCGT
GGTTGGCGGGAAGCTCGTCGGGACGGTCAAGTCCAAGCGGCTGGAGGTGA
CGAGGGCGGGCAAGATGGATGGCACGGCGGTCGTTGAGATGGCCGAGATC
GCTGGCACGTTCGAGGGAAACCTCACGGTCACCAAGGCGCTAAAGGTGCG
TTCACATTTTCCTATGGTTTTCGCGCGTGCGACGATGATGAAGCAGCAGC
AGCAGGTTTTTTCTCTACTGCTGTGGTGATAAAAATTGAATTGATAGTAT
TTGAGAGGCGAGCGAGGGAGCCCGTTTTGAGCTCCCGCGTGCTTCTTCTT
ATTTCGCGTCGAGACAAACAACAGCAGCGTGCGCTCACGAGGCGTTTAAA
TGCCAACAAACGTGCACAACCAACACAGCAGCACGAAGTTTTTTTGGTTT
CTTCCCTCTCCACCAGATCTCCTCTTGTGCTACTGAAAGAAATGATAAAC
CGCCAACGGGCTCCGTCCATATGCTTGTAATTGTAGCACGTTGGAGGTGG
CACCAGCATTGCTTCTTGCTCTCTCACGGTGTCAGCTCCTGCTGTCCAGC
TGCCCCGTGTCGCGCTTCTTCATCCCTCCCTACCTCCCGCCCAAGAGGCG
TAGAAATGACGACGAAAAATTGTTTCAAGCTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1023:22283..23417+

>mRNA_Ecto-sp9_F_contig1023.256.1 ID=mRNA_Ecto-sp9_F_contig1023.256.1|Name=mRNA_Ecto-sp9_F_contig1023.256.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1548bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1023:22283..23417+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCAAGCGGCGGTCATCCAAGGAGCTGAGCGCCAAGATCGGATACGA
CCATGTCAACGGCAAGGCTTCGAGAAACACGTCCGTGCCTTCCCTGCCCT
CGAGCACCTCCGCCACCAACAACGCCGTCGCCCCGGTGGCCAGCATCCCG
CACCCCGGCGGCCACCTCCACCACAAGCAGGGCTCTTTCTCGTCCGGCTC
GTCCTCCTACCGGAAAACGACCAGCATGCCCTCTCCCGAGGGCGACAGCG
GAGATGACCCGTCCGCCGAGAGGCCCTCCCCGCTAGCGGCGCTCAAGCCA
CTCCCTCCCGCCGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGT
TATCTCGACCAAGGCTCCCAGCAAGGCCAACAAGTCGGCGGCGACGGCGG
CGGCGGCGCCGAAGGTAGTAGCCGAGCCGCCCTCCAAGAGCCTGGTGATC
GGCGAAGGGGTGCTGTTCGAGGGGGCCACGGAAGGTTGCGCGGCGGCCGT
GGTTGGCGGGAAGCTCGTCGGGACGGTCAAGTCCAAGCGGCTGGAGGTGA
CGAGGGCGGGCAAGATGGATGGCACGGCGGTCGTTGAGATGGCCGAGATC
GCTGGCACGTTCGAGGGAAACCTCACGGTCACCAAGGCGCTAAAGATGTT
CAAGCGGCGGTCATCCAAGGAGCTGAGCGCCAAGATCGGATACGACCATG
TCAACGGCAAGGCTTCGAGAAACACGTCCGTGCCTTCCCTGCCCTCGAGC
ACCTCCGCCACCAACAACGCCGTCGCCCCGGTGGCCAGCATCCCGCACCC
CGGCGGCCACCTCCACCACAAGCAGGGCTCTTTCTCGTCCGGCTCGTCCT
CCTACCGGAAAACGACCAGCATGCCCTCTCCCGAGGGCGACAGCGGAGAT
GACCCGTCCGCCGAGAGGCCCTCCCCGCTAGCGGCGCTCAAGCCACTCCC
TCCCGCCGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTTATCT
CGACCAAGGCTCCCAGCAAGGCCAACAAGTCGGCGGCGACGGCGGCGGCG
GCGCCGAAGGTAGTAGCCGAGCCGCCCTCCAAGAGCCTGGTGATCGGCGA
AGGGGTGCTGTTCGAGGGGGCCACGGAAGGTTGCGCGGCGGCCGTGGTTG
GCGGGAAGCTCGTCGGGACGGTCAAGTCCAAGCGGCTGGAGGTGACGAGG
GCGGGCAAGATGGATGGCACGGCGGTCGTTGAGATGGCCGAGATCGCTGG
CACGTTCGAGGGAAACCTCACGGTCACCAAGGCGCTAAAGCATTGCTTCT
TGCTCTCTCACGGTGTCAGCTCCTGCTGTCCAGCTGCCCCGTGTCGCGCT
TCTTCATCCCTCCCTACCTCCCGCCCAAGAGGCGTAGAAATGACGACGAA
AAATTGTTTCAAGCTTTAACATTGCTTCTTGCTCTCTCACGGTGTCAGCT
CCTGCTGTCCAGCTGCCCCGTGTCGCGCTTCTTCATCCCTCCCTACCTCC
CGCCCAAGAGGCGTAGAAATGACGACGAAAAATTGTTTCAAGCTTTAA
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