mRNA_Ecto-sp9_F_contig1023.254.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1023.254.1
Unique NamemRNA_Ecto-sp9_F_contig1023.254.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1023.254.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1023contigEcto-sp9_F_contig1023:10563..10727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_001640.1
Exons1
Model size165
Cds size165
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.6493855-CDS-Ecto-sp9_F_contig1023:10562..107271622928219.6493855-CDS-Ecto-sp9_F_contig1023:10562..10727Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 10563..10727 -
1692277800.223739-CDS-Ecto-sp9_F_contig1023:10562..107271692277800.223739-CDS-Ecto-sp9_F_contig1023:10562..10727Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 10563..10727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1023.254.1prot_Ecto-sp9_F_contig1023.254.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1023 10563..10727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1023.254.1

>prot_Ecto-sp9_F_contig1023.254.1 ID=prot_Ecto-sp9_F_contig1023.254.1|Name=mRNA_Ecto-sp9_F_contig1023.254.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=55bp
MILHHGPCSLRQSHPRSRKTQPGPTPSFALPQGIPPSTPLAPFLAGIQAP
LAAS*
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mRNA from alignment at Ecto-sp9_F_contig1023:10563..10727-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1023.254.1 ID=mRNA_Ecto-sp9_F_contig1023.254.1|Name=mRNA_Ecto-sp9_F_contig1023.254.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1023:10563..10727- (Ectocarpus species9 EcSCA_722f female)
ATGATTCTACATCATGGCCCTTGCAGTCTGAGGCAATCACACCCAAGGTC
TAGAAAAACACAGCCTGGCCCGACTCCTTCATTCGCCCTGCCGCAAGGAA
TCCCCCCCTCCACCCCCCTCGCCCCATTCCTCGCCGGGATTCAAGCCCCT
CTTGCCGCCTCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1023:10563..10727-

>mRNA_Ecto-sp9_F_contig1023.254.1 ID=mRNA_Ecto-sp9_F_contig1023.254.1|Name=mRNA_Ecto-sp9_F_contig1023.254.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1023:10563..10727- (Ectocarpus species9 EcSCA_722f female)
ATGATTCTACATCATGGCCCTTGCAGTCTGAGGCAATCACACCCAAGGTC
TAGAAAAACACAGCCTGGCCCGACTCCTTCATTCGCCCTGCCGCAAGGAA
TCCCCCCCTCCACCCCCCTCGCCCCATTCCTCGCCGGGATTCAAGCCCCT
CTTGCCGCCTCTTGAATGATTCTACATCATGGCCCTTGCAGTCTGAGGCA
ATCACACCCAAGGTCTAGAAAAACACAGCCTGGCCCGACTCCTTCATTCG
CCCTGCCGCAAGGAATCCCCCCCTCCACCCCCCTCGCCCCATTCCTCGCC
GGGATTCAAGCCCCTCTTGCCGCCTCTTGA
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