mRNA_Ecto-sp9_F_contig1023.253.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1023.253.1 vs.
Match: Calponin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS06_ECTSI) HSP 1 Score: 854 bits (2207), Expect = 9.780e-311 Identity = 474/490 (96.73%), Postives = 478/490 (97.55%), Query Frame = 1
Query: 1 MSDKQGQGHLGVGKPSVADEKGGTSGGGVSGDDGDARASRDREDGRPACLPLPSPPRLPSKRTLTDSVMDSTVARFEASCKLTGQGTAAAPSAARTALATVSSPANTVRTPSWDKNATPADLEARERTAQAWIEAVSGRACVEYQTKQFARNIMSGEVLCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLGPAADPSLVAAVPPADEDEDGDDG---DGKDNAVADXXXXXXGAFGDFWRASVSRTGGNAPREGGGGRDGDVAGDNTLVLNMQDVERPRSTRRGFTTTVGSITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHPSRSPTLRAAWESNATNGGRAAAGRSAWGTDAYPAKRAAKATSNLSATSSRGMTLSPAGIWGTGAGTAPREGIGKSASPAAAXXXXXXXXXXXXSHTGSEDPEGTEEGA 1461
MSDKQGQGHLGVGKPSVADEKGGTSGGGVSGDDGDARASRDREDGRPACLPLPSPPRLPSKRTLTDSVMDSTVARFEASCKLT QGTAAAPSAARTALATVSS ANTVRTPSWDKNATPA LEARERTAQAWIEAVSGRACVEYQTKQFARN+MSGE+LCALVNAIRPGTIP VHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLGPAADP+LVAAVPPADEDE GDDG DGKDNAV XXXXX GAFGDFWRASV RTGGNAPREGGGGRDGDVAGDNTLVLNMQDVERPRSTRRGFTTTVGSITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHP+RSPTLRAAWESNATNGGRAAAGRSAWGTDAYPAKRAAKATSNLSATSSRGMTLSPAGIWGTGAGTAPREGIGKSASPAAAXXXXXXXXXXXXSHTGSEDPEGTEEGA
Sbjct: 1 MSDKQGQGHLGVGKPSVADEKGGTSGGGVSGDDGDARASRDREDGRPACLPLPSPPRLPSKRTLTDSVMDSTVARFEASCKLTEQGTAAAPSAARTALATVSSAANTVRTPSWDKNATPAHLEARERTAQAWIEAVSGRACVEYQTKQFARNLMSGEILCALVNAIRPGTIPHVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLGPAADPTLVAAVPPADEDE-GDDGGXXDGKDNAVXXXXXXXDGAFGDFWRASV-RTGGNAPREGGGGRDGDVAGDNTLVLNMQDVERPRSTRRGFTTTVGSITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHPTRSPTLRAAWESNATNGGRAAAGRSAWGTDAYPAKRAAKATSNLSATSSRGMTLSPAGIWGTGAGTAPREGIGKSASPAAAXXXXXXXXXXXXSHTGSEDPEGTEEGA 488
BLAST of mRNA_Ecto-sp9_F_contig1023.253.1 vs.
Match: Calponin-homology ((CH) domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ6_9PHAE) HSP 1 Score: 772 bits (1994), Expect = 4.600e-278 Identity = 415/460 (90.22%), Postives = 425/460 (92.39%), Query Frame = 1
Query: 1 MSDKQGQGHLGVGKPSVADEKGGTSGGGVSGDDGDARASRDREDGRPACLPLPSPPRLPSKRTLTDSVMDSTVARFEASCKLTGQGTAAAPSAARTALATVSSPANTVRTPSWDKNATPADLEARERTAQAWIEAVSGRACVEYQTKQFARNIMSGEVLCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLGPAADPSLVAAVPPADEDEDGDDGDGKDNAVADXXXXXXGAFGDFWRASVSRTGGNAPREGGGGRDGDVAGDNTLVLNMQDVERPRSTRRGFTTTVGSITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHPSRSPTLRAAWESNATNGGRAAAGRSAWGTDAYPAKRAAKATSNLSATSSRGMTLSPAGIWGTGAGTAPREGIGKSASPAAA 1380
M DKQGQGHLGV +PSVADEKGGTSGGGVSGDDGD+R S DREDG+PACLPLPSPPRLPSKRTLTDSVMDSTV+RF+ASCKL+ QGTAAAPSAARTALA+VSS NTVRTPSWDKNA+PADLEARERTAQAWIEAVSGRACV YQTKQFARNIMSGE+LCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLGPAADPSLVA VPPADEDE XXXXX GAFGDFWRASV TGGNAP EGGGG DGDVA DN LVLNMQDVERPRSTRRGFTTTVGSITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHP RSPTLRAAWESNATNGGRAAAGRSAWGTDAYPAKR AK TSNLSATSSRGMTLSPAGIWGTGAG PR+GIGKSASPAAA
Sbjct: 1 MPDKQGQGHLGVERPSVADEKGGTSGGGVSGDDGDSRGSGDREDGKPACLPLPSPPRLPSKRTLTDSVMDSTVSRFKASCKLSDQGTAAAPSAARTALASVSSAPNTVRTPSWDKNASPADLEARERTAQAWIEAVSGRACVAYQTKQFARNIMSGEILCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLGPAADPSLVAVVPPADEDEGXXXXXXXXXXXXXXXXXXDGAFGDFWRASVG-TGGNAPHEGGGGHDGDVASDNMLVLNMQDVERPRSTRRGFTTTVGSITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHPPRSPTLRAAWESNATNGGRAAAGRSAWGTDAYPAKRTAKITSNLSATSSRGMTLSPAGIWGTGAGAVPRQGIGKSASPAAA 459
BLAST of mRNA_Ecto-sp9_F_contig1023.253.1 vs.
Match: Calponin (homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA) HSP 1 Score: 128 bits (322), Expect = 3.060e-30 Identity = 63/118 (53.39%), Postives = 87/118 (73.73%), Query Frame = 1
Query: 376 ERTAQAWIEAVSGRACVEYQTKQFARNIMSGEVLCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLG 729
ERTAQ W+EAV+G V+++ FA ++ G +LC L+NAI+PGTI R++ S++ F+QMENI++FL AC LGV ++L +T D+FE +D V+ C+ ALGSAVQ S PEF GPHLG
Sbjct: 27 ERTAQEWMEAVTG---VKFEGS-FASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLG 140
BLAST of mRNA_Ecto-sp9_F_contig1023.253.1 vs.
Match: CNN1 (protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CPU7_9DINO) HSP 1 Score: 105 bits (263), Expect = 1.030e-23 Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 1
Query: 370 ARERTAQAWIEAVSGRACVEYQTKQFARNIMSGEVLCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEF 711
A E A AWI+AV+G + V FA + SG VLC LVN I+PGTI +V+ + F++ ENI++FL AC GVQ +AL T D+FE ++ VV CV+ALG AVQ S P+F
Sbjct: 8 AAEEQAAAWIQAVTGHSVVN----DFAGCLRSGAVLCDLVNCIQPGTIAKVNSPGMPFKERENISNFLRACRNFGVQEYALFSTDDLFEEKNLMSVVNCVYALGGAVQRSVPDF 117
BLAST of mRNA_Ecto-sp9_F_contig1023.253.1 vs.
Match: Cnn3 (protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812H1J4_9DINO) HSP 1 Score: 111 bits (278), Expect = 1.660e-23 Identity = 59/120 (49.17%), Postives = 77/120 (64.17%), Query Frame = 1
Query: 370 ARERTAQAWIEAVSGRACVEYQTKQFARNIMSGEVLCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLG 729
A E A AWI+ V+G A V FA ++ SG VLC LVN I+PGTI +V+ + F++ ENI++FL AC GVQ +AL T D+FE ++ VV CV+ALG AVQ S P+F GP G
Sbjct: 182 AAEEQAAAWIQEVTGHAVVN----DFAGSLRSGAVLCDLVNCIQPGTIAKVNSPGMPFKERENISNFLRACRNFGVQEYALFSTDDLFEEKNLMSVVNCVYALGGAVQRSVPDFPGPVFG 297
BLAST of mRNA_Ecto-sp9_F_contig1023.253.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1PVF5_ALECA) HSP 1 Score: 107 bits (268), Expect = 2.170e-23 Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = 1
Query: 394 WIEAVSGRACVEYQTKQFARNIMSGEVLCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLGPA 735
WIE V+G E ++ +N G VLC+L N I+PGT+ +V+ S + F+QMENI F++A ++GV ++ T D++E ++ V+ C+H+LGSAVQVSCP +GGP LG A
Sbjct: 53 WIEEVTGEKRGEQSAAEWLKN---GAVLCSLANKIKPGTVKKVNTSAMPFKQMENITFFMNAAREVGVPESSMFGTPDLYEEKNMGSVMSCIHSLGSAVQVSCPSYGGPKLGHA 163
BLAST of mRNA_Ecto-sp9_F_contig1023.253.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V4E0_9DINO) HSP 1 Score: 111 bits (277), Expect = 5.670e-23 Identity = 57/122 (46.72%), Postives = 81/122 (66.39%), Query Frame = 1
Query: 370 ARERTAQAWIEAVSGRACVEYQTKQFARNIMSGEVLCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLGPA 735
A E AWI++VSG A + ++ + SG+VLC L+NAI+PG I +V+ S + F+QMENI F++A +LGV ++ D++E ++ V+ C+HALGSAVQVSCPEF GP LG A
Sbjct: 245 ALEAEVVAWIQSVSGEAKGDESPHEWLK---SGQVLCKLINAIKPGKIAKVNTSAMPFKQMENITFFMNAARELGVPESSMFGCPDLYEEKNMGSVMNCLHALGSAVQVSCPEFTGPKLGHA 363
BLAST of mRNA_Ecto-sp9_F_contig1023.253.1 vs.
Match: Hypothetical (protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JU22_POLGL) HSP 1 Score: 110 bits (274), Expect = 3.690e-22 Identity = 56/125 (44.80%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 361 DLEARERTAQAWIEAVSGRACVEYQTKQFARNIMSGEVLCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLGPA 735
D +A E A+ W++A++G V F + SG+VLC LVN+IR G++ +++ + + F++ ENI++FL C LGVQ +AL T D++E ++ VV CVHALG AVQ S PEF GPH G A
Sbjct: 345 DAQAEEDAAR-WVQAITGEEVVG----DFFDALRSGQVLCQLVNSIRAGSVAKINSAGMPFKERENISNFLRVCRSLGVQEYALFSTDDLYEEKNLQSVVNCVHALGGAVQRSVPEFRGPHFGVA 464
BLAST of mRNA_Ecto-sp9_F_contig1023.253.1 vs.
Match: Calponin (domain-containing protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A7WQ46_NOCSC) HSP 1 Score: 107 bits (268), Expect = 7.240e-22 Identity = 51/112 (45.54%), Postives = 76/112 (67.86%), Query Frame = 1
Query: 394 WIEAVSGRACVEYQTKQFARNIMSGEVLCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLG 729
WI+ VSG + + FA + G+VLCAL+NAI+PG IP+V++S L F+QMENI F++A +GV ++ T D++E ++ V++C++ LG AVQV+ PEF GP LG
Sbjct: 238 WIQTVSGSSIGD---ASFAEWLHDGKVLCALINAIKPGAIPKVNQSTLAFKQMENITYFMNAARDMGVPESSMFGTPDLYEEKNIGSVIQCIYTLGGAVQVNVPEFTGPKLG 346
BLAST of mRNA_Ecto-sp9_F_contig1023.253.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4W504_9DINO) HSP 1 Score: 110 bits (274), Expect = 7.470e-22 Identity = 57/120 (47.50%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 370 ARERTAQAWIEAVSGRACVEYQTKQFARNIMSGEVLCALVNAIRPGTIPRVHESQLGFEQMENINSFLSACCKLGVQAHALVDTADVFEMRDTAKVVECVHALGSAVQVSCPEFGGPHLG 729
A E+ WIEA+SG + +T Q + +G +LC LVNAIRPGTI +VH S+L F+QMENI F S ++GV A+ TAD+FE ++ V+ C+ AVQV PEF GPHLG
Sbjct: 541 ALEKQVTEWIEAISGEKKGDEETIQ--EWLKNGRILCVLVNAIRPGTIKKVHSSKLAFKQMENITFFTSVAREVGVPESAMFGTADLFEGKNMGSVMTCIFMFAGAVQVHWPEFPGPHLG 658 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1023.253.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1023.253.1 >prot_Ecto-sp9_F_contig1023.253.1 ID=prot_Ecto-sp9_F_contig1023.253.1|Name=mRNA_Ecto-sp9_F_contig1023.253.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=499bp MSDKQGQGHLGVGKPSVADEKGGTSGGGVSGDDGDARASRDREDGRPACLback to top mRNA from alignment at Ecto-sp9_F_contig1023:1974..10387+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1023.253.1 ID=mRNA_Ecto-sp9_F_contig1023.253.1|Name=mRNA_Ecto-sp9_F_contig1023.253.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8414bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1023:1974..10387+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1023:1974..10387+ >mRNA_Ecto-sp9_F_contig1023.253.1 ID=mRNA_Ecto-sp9_F_contig1023.253.1|Name=mRNA_Ecto-sp9_F_contig1023.253.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2994bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1023:1974..10387+ (Ectocarpus species9 EcSCA_722f female)back to top |