mRNA_Ecto-sp9_F_contig10222.247.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10222.247.1
Unique NamemRNA_Ecto-sp9_F_contig10222.247.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10222.247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI0_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.310e-32
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 2 
Query:   14 MVIIVSGAVWAGITVTKIVISKVLVWKAFERCKRPDENREYETNSSDKEARHDGQDVPELDQGVDDDEGEERQPVISAT 250
            MVIIVSGAVWAGI VTK VISKVLVWKA ERC RPDENRE++TNSSD+EAR DG+DVPEL Q VDD+E E++QPVI AT
Sbjct:    1 MVIIVSGAVWAGIMVTKCVISKVLVWKALERCVRPDENREHKTNSSDEEARDDGEDVPELAQEVDDEEEEDQQPVIGAT 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10222.247.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.310e-3279.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10222contigEcto-sp9_F_contig10222:3017..3778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_004590.1
Exons3
Model size254
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10222.247.1prot_Ecto-sp9_F_contig10222.247.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10222 3030..3778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928218.0241072-UTR-Ecto-sp9_F_contig10222:3016..30291622928218.0241072-UTR-Ecto-sp9_F_contig10222:3016..3029Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10222 3017..3029 +
1692277799.8151345-UTR-Ecto-sp9_F_contig10222:3016..30291692277799.8151345-UTR-Ecto-sp9_F_contig10222:3016..3029Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10222 3017..3029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928218.0439487-CDS-Ecto-sp9_F_contig10222:3029..31451622928218.0439487-CDS-Ecto-sp9_F_contig10222:3029..3145Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10222 3030..3145 +
1692277799.8236988-CDS-Ecto-sp9_F_contig10222:3029..31451692277799.8236988-CDS-Ecto-sp9_F_contig10222:3029..3145Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10222 3030..3145 +
1622928218.056102-CDS-Ecto-sp9_F_contig10222:3438..35081622928218.056102-CDS-Ecto-sp9_F_contig10222:3438..3508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10222 3439..3508 +
1692277799.833242-CDS-Ecto-sp9_F_contig10222:3438..35081692277799.833242-CDS-Ecto-sp9_F_contig10222:3438..3508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10222 3439..3508 +
1622928218.728251-CDS-Ecto-sp9_F_contig10222:3724..37781622928218.728251-CDS-Ecto-sp9_F_contig10222:3724..3778Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10222 3725..3778 +
1692277799.842733-CDS-Ecto-sp9_F_contig10222:3724..37781692277799.842733-CDS-Ecto-sp9_F_contig10222:3724..3778Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10222 3725..3778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10222.247.1

>prot_Ecto-sp9_F_contig10222.247.1 ID=prot_Ecto-sp9_F_contig10222.247.1|Name=mRNA_Ecto-sp9_F_contig10222.247.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=80bp
MVIIVSGAVWAGITVTKIVISKVLVWKAFERCKRPDENREYETNSSDKEA
RHDGQDVPELDQGVDDDEGEERQPVISATN
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mRNA from alignment at Ecto-sp9_F_contig10222:3017..3778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10222.247.1 ID=mRNA_Ecto-sp9_F_contig10222.247.1|Name=mRNA_Ecto-sp9_F_contig10222.247.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=762bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10222:3017..3778+ (Ectocarpus species9 EcSCA_722f female)
CTTGAGAAGAACAATGGTAATAATTGTGAGCGGAGCAGTCTGGGCCGGCA
TCACGGTGACCAAGATCGTAATCTCCAAGGTCTTGGTATGGAAGGCCTTC
GAACGATGCAAGCGGCCGGACGAGAACAGGTGAGACACCCCCTTCAATGC
AGTGTTGTACATCAATGATGCAGGCTCAGTAGGGCACAACCTGTTTTGAA
AAATGAACGATTATTGGTATTGTAACCATCCCTACGTTGGGAGTGAGGGT
CCATGTTAGACCAGAGCACATTTCACATCAAGCGCACTCCGTCAACCTCT
CGACGCTGACCGCCACGATACTGACCCTCTTGCCACCAACAACCCACTCA
CAATACAAACCATGCACTGCAAATACCACATAATATACGGACATACGTAC
GTGCTGTCATTAACTTCCGCAGGGAATACGAGACCAACAGCAGTGACAAA
GAAGCACGCCATGATGGCCAAGATGTTCCAGAGCTCGATCAGGTAGAGCT
GATTGATGATACAGCCGTACTCAGTTGTACTGAAGGACTCAGGTCAAAGT
TGCTACCCAACGTGCAGCGGTGGTTCCGAGTTCATTCGCGACTCGTCGAT
GATCTAGACTATTTATTCCCTCAGCTACAGTAGTAGTAGGTGATAGTTCG
TACGGTGTTTGCTTATCGCTAGGCCGCACCCGGCGTTGTTTACGCACCCC
CGCAACAGGGAGTCGACGACGACGAGGGAGAGGAGCGGCAGCCCGTGATT
AGTGCCACGAAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10222:3017..3778+

>mRNA_Ecto-sp9_F_contig10222.247.1 ID=mRNA_Ecto-sp9_F_contig10222.247.1|Name=mRNA_Ecto-sp9_F_contig10222.247.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10222:3017..3778+ (Ectocarpus species9 EcSCA_722f female)
ATGGTAATAATTGTGAGCGGAGCAGTCTGGGCCGGCATCACGGTGACCAA
GATCGTAATCTCCAAGGTCTTGGTATGGAAGGCCTTCGAACGATGCAAGC
GGCCGGACGAGAACAGATGGTAATAATTGTGAGCGGAGCAGTCTGGGCCG
GCATCACGGTGACCAAGATCGTAATCTCCAAGGTCTTGGTATGGAAGGCC
TTCGAACGATGCAAGCGGCCGGACGAGAACAGGGAATACGAGACCAACAG
CAGTGACAAAGAAGCACGCCATGATGGCCAAGATGTTCCAGAGCTCGATC
AGGGAATACGAGACCAACAGCAGTGACAAAGAAGCACGCCATGATGGCCA
AGATGTTCCAGAGCTCGATCAGGGAGTCGACGACGACGAGGGAGAGGAGC
GGCAGCCCGTGATTAGTGCCACGAACGGAGTCGACGACGACGAGGGAGAG
GAGCGGCAGCCCGTGATTAGTGCCACGAAC
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