mRNA_Ecto-sp9_F_contig1.23.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1.23.1
Unique NamemRNA_Ecto-sp9_F_contig1.23.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IC71_OSTTA)

HSP 1 Score: 683 bits (1763), Expect = 5.450e-248
Identity = 350/353 (99.15%), Postives = 351/353 (99.43%), Query Frame = 1
Query:    1 MASSPFQMFDLLSRQVRRGIKAQQSPLTMSHSSKSLKQLAKGPNENLLKEFYKVLPGVSEILQQLVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGKYKATTVHDEETD 1059
            MASSPFQMFDLLSRQVRRGIKAQQSPLTMSHSSKSLKQLAKGPNENLLK FYKVLPGVSEILQQLVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQM+LMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKPTMRRIPAPSQT NASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGKYKATTVHDEETD
Sbjct:    1 MASSPFQMFDLLSRQVRRGIKAQQSPLTMSHSSKSLKQLAKGPNENLLKAFYKVLPGVSEILQQLVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMILMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKPTMRRIPAPSQTLNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGKYKATTVHDEETD 353          
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudomonas putida TaxID=303 RepID=A0A8I1EH43_PSEPU)

HSP 1 Score: 89.7 bits (221), Expect = 1.630e-16
Identity = 85/290 (29.31%), Postives = 129/290 (44.48%), Query Frame = 1
Query:  193 LVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLR------HETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLK--IDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIP-----KVTGIPTPGLDKHSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGK 1023
            +  AE  W  +G N +FP S +    LL +RF +   E   L F S  F+L+VP+   V+G KIPS +V+            +  E V+   +    F +       ET    V+I        S T   +  +++SQ+  +L    + +  D L  + +            + +S  DL IQ +++RL+  + +Y  A     L  G+P     K+ G    G  K S  T    P     R  S       R W FR LRADRYY+G+YAS+ KGSR+  VS++ VG+
Sbjct:   58 IFAAEHFWIRTGANAIFPESAEVLDNLLRARFQMDAAEGFTLPFES--FMLSVPQGYAVDGVKIPSFIVSC-------FPYQKMAETVIGPFLQYAGFKKPVAVSLDETSEDDVAIALCYKDPTSKTAYARTLVSVSQIPSILANTSNSELSDELGEYSEYLD--------VVGLSEYDLKIQRIMLRLVAAIGIYNMATEGKRLLPGLPGTQEPKIIGKAPSGGFKFSTLTNSFPPL----REGSAPADAYYRTWFFRQLRADRYYKGEYASYAKGSRYVFVSDSIVGQ 326          
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudomonas putida TaxID=303 RepID=A0A8I1ECP1_PSEPU)

HSP 1 Score: 87.4 bits (215), Expect = 1.030e-15
Identity = 87/320 (27.19%), Postives = 146/320 (45.62%), Query Frame = 1
Query:  130 NENLLKEFYKVLPGVSEILQQLVVAETD-WNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDER----IEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKPTMRRIPAPSQTRNASTMDTPTTR-----RWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGKYKATTVHDEETD 1059
            + ++L+   +  P +   L  L+++E   W   G +++FP S      LL +++ +   E  +L  P +AF +A+P     NG ++   MVT+ + R  +    +   R++      G    E  R E M   +SI F +P      T     +   QL + L   +     +  ++Q+    +D   + +D++ S+L  Q + ++L+  L VY  A     LSDG P   G   P ++   K    R    S  RN + +D    R      W FR LRADRYYQG++   P+GSR++ VS+  VG+    T H +  D
Sbjct:   37 DNDILRVLMESNPAMMHSLNFLILSEEFYWKSQGGDVIFPESPAVLDNLLRAKYQMDSPEGFRL--PFSAFSVAIPNGYAFNGVRLLPFMVTFIHHRTAQDITTLPFCRKIGLREPPGFGYAES-RPEAM--ALSITFRDP------TNRHAYIRTLQLDEALPRVLKCQTAME-YKQVVGDYEDKFGV-IDLTESELEAQFLAVKLVAALGVYHMATNGDRLSDGYP---GSQEPRMNNRDKSLRMRF---STLRNKADVDAIEARDAFYRTWFFRQLRADRYYQGEHEKTPRGSRYSFVSDTVVGQ--KVTPHTQRDD 335          
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pseudomonas sp. Leaf58 TaxID=1736226 RepID=A0A0Q4N1J1_9PSED)

HSP 1 Score: 67.8 bits (164), Expect = 3.900e-9
Identity = 83/305 (27.21%), Postives = 129/305 (42.30%), Query Frame = 1
Query:  139 LLKEFYKVLPGVSEILQQLVVAETDWNLSGRN-ILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTY---SNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAM-DMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKP---TMRRIPAPSQTRNASTMDTPTT---RRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVG 1020
            +L +F +  P +       ++AE  +  S  + ++FP S      LL +R+ +   E   + FPS  FILA PR     G +IPS +V++      +DE +  +    +V    VS  E  +       +S+ + +   E        T+   Q   VL   + A +  ++ E + ++      LA  D+S SD  IQ   ++LI  L VY  A   + L  G P        G     K    T+     P     +   D   T   R WHFR LR +RYY+G+YA    G+R+  V  A VG
Sbjct:    1 MLSDFIRRQPDIQNDHAFYIMAEELFLQSHNSQVIFPESSLVLDNLLKARYSLSSSEGLDMPFPS--FILAPPRGYAFKGIEIPSLLVSWVIGDGFKDEVLRPFLDYIKVPGDRVSFSELPQD----GILSLIYRDKTGECSR-----TVIYGQNIPVL---LGAKNPQAYREAMVSQ---GLILAQEDLSESDSDIQFYSLKLIAALGVYHVATQGNKLKQGFPTPQAPRMEGRRAEQKVAPVTLVNSTPPLANSESVRHDAGRTAHYRAWHFRQLRDERYYRGEYAHHAPGTRYIFVESALVG 288          
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pseudomonas sp. FFUP_PS_41 TaxID=2060417 RepID=A0A2N5B769_9PSED)

HSP 1 Score: 67.0 bits (162), Expect = 8.570e-9
Identity = 80/309 (25.89%), Postives = 132/309 (42.72%), Query Frame = 1
Query:  118 AKGPNENLLKEFYKVLPGVSEILQQLVVAET-DWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEF-LRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLD------KHSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVG 1020
            AK  ++ L+ +  ++    ++     ++ E   +   G  ++FP S      LL +R+ +   +    N P  +F+LAVPR    NG+ +P  +VT        IE       +    V    F L   T+   +SI + +P         +  L+L  +  VL+    +P     F       +D SA    MS  +  I+    +L++ L VY +A     L  G P      TP LD      + S  T+     PS   + + +     R W FR LRADRYY+G+++ +  G+R++ VSE  VG
Sbjct:   23 AKSTDKELMADVIRMAANKNDGQSPYILCEEFKFRRQGSQVIFPESPVILDNLLRARYSVETVDG--FNLPFESFMLAVPRGYAHNGFLVPGLLVTVIKLHS--IEPDLLHPLLDEYDVPRATFKLTDHTVSDMLSIVYTDPGSSEK---CRAFLSLRDIPAVLQT--RSPSDYRDFMFSKGFLRDKSA----MSDHNSAIEFNAFKLVLALGVYHAATRGDKLHAGFPAGD---TPRLDGWKPGRELSPVTLTSSIPPSA--DGTIVKDAFYRTWFFRQLRADRYYKGEFSHYAPGTRYSFVSETVVG 313          
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudomonas putida TaxID=303 RepID=A0A8I1EBL3_PSEPU)

HSP 1 Score: 66.6 bits (161), Expect = 1.230e-8
Identity = 81/306 (26.47%), Postives = 129/306 (42.16%), Query Frame = 1
Query:  130 NENLLKEFYKVLPGV-SEILQQLVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYS------CVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLD-KHSKPTMRRIPAPSQTRNASTMDTPTT-RRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVG 1020
            ++ +L+ F +  P + S+    ++  E      G  ++FP +      LL +RF +   E   L  P  +F+LA+PR    NG ++PS +VT+   RD   +       VL   + +   +  +T Y        +SI F +   +     ++  +    L  +L      PD            KDS A    M  ++   Q   MRL+  L VY  A     L  G P       P +D + S   ++ +   S+       D     R WHFR LR +RYY+G+Y   P+GSR+  VSEA +G
Sbjct:   36 DQAVLQRFARRSPDLTSDHAFYIMAEELHLKNQGSQVIFPDTGMVLDNLLKARFSMETHEGFTL--PYRSFLLAMPRGYKFNGLQLPSLLVTWVPGRDFSSD-------VLAPFLKQLGVVEGKTRYEDLPDMGLLSIVFLDRDAKG--ARSRSVIYGEDLPHLLGA--KNPDQFHSQMVRLGILKDSDA----MDAAEAATQFYSMRLVASLGVYHLATEGKHLKPGFPSSQA---PRMDGRRSDQPVKPLTLTSKINFDDAADKQAHFRSWHFRQLRDERYYRGEYRDHPQGSRYVFVSEAVIG 321          
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=4 Tax=Pseudomonas TaxID=286 RepID=A0A241XRN5_PSEAI)

HSP 1 Score: 65.9 bits (159), Expect = 2.140e-8
Identity = 75/295 (25.42%), Postives = 117/295 (39.66%), Query Frame = 1
Query:  169 GVSEILQQLVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYS-------CVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFE-QIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPK--VTGIPTPGLDKHSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGK 1023
            GV      ++  E  W L     LFP S D    L T+ F +      +L F S  FILA+P    + G  +PS +VT+   +                       +RHE +Y+       C S  +   + E    +     + S  +  L  + D P  LS        R+    +  + +S ++  IQ   ++L+  + VY  A     L+ G P+     I   G D+       +   P    +    D+   R W FR LRA RYY+G+Y+    GSR+T+V  A VG+
Sbjct:   51 GVGSNTWMVLAEEHFWGLQEAVTLFP-SHDLLGNLRTAHFRMDSSAGYELPFES--FILALPLGFEIGGVALPSLLVTWLTDQ-----------------------VRHEHVYAELCRYAGCGSRAYSGQKPEERWLSITYRADESSYSRTLLCEHDLPSLLSSRSLDDFKREVGKYSGGISLSDTEAAIQYQALKLVGAIGVYNLATDGDKLAPGFPEGSTPKIEGKGADQRLTSYHLQNAIPVVVADREVADS-YYRGWFFRQLRAARYYKGEYSRRAVGSRYTLVGPAVVGQ 318          
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: hypothetical (protein n=1 Tax=Vibrio crassostreae TaxID=246167 RepID=UPI001B31839E)

HSP 1 Score: 64.3 bits (155), Expect = 7.310e-8
Identity = 67/277 (24.19%), Postives = 118/277 (42.60%), Query Frame = 1
Query:  193 LVVAETDWNLSG-RNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTY--SNTRDE-RIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDK-HSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSE 1008
            L + ET W + G R  +F   E     L  +        +  +N P  +F +++P+   ++G ++   +V++   +T D    + +    R++ S +  E     +     + +F H   D  DT    +T ++S+    +    DA     H + +    K  +A              +  +L + L +Y S+  E V+ +G P+V   P  G +K H KP            N         R  H+RNLRA+R+YQG+Y+ W +GSRW  VS+
Sbjct:   70 LAMDETFWIMEGKRTTVFLDDERLTKTLYDAEINFKT--DCSVNIPFHSFCISLPKGTVIDGVEVEPFLVSFFKPSTYDTINQKHFNGSTRLIGSEILREHTNFPDDFLISIKVFNHE-LDSYDT----ITSDVSRAIFDISTSPDASMTSKHKKSLEETGKGYNAY-------------ITTKLALALLIYNSSQSEPVIVEGYPEVEVKPPEGTNKTHYKPFTLTGKGIDMGNNLHRQKV-VRRVAHWRNLRAERFYQGEYSKWDRGSRWVFVSQ 325          
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: hypothetical (protein n=1 Tax=Shewanella sp. KX20019 TaxID=2803864 RepID=UPI001926A879)

HSP 1 Score: 63.2 bits (152), Expect = 1.310e-7
Identity = 70/263 (26.62%), Postives = 115/263 (43.73%), Query Frame = 1
Query:  223 SGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKPTMRRIPAPSQT-RNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSE 1008
            +GRNI+FP S +    ++ SRF I EG N  ++FP  +F++A+PRD  +       P++     ++ R EQ  ++      G +E+  +        +S+ + +  D++D   + L  N            D P  L        ++K ++A   D            ++    L +Y SA G   + +G P+   +  P   KHSK           T  N   +D    +  HFRNL+  R+Y G Y+    GSRWT+VSE
Sbjct:   63 TGRNIIFPESNELIKSIMESRFDISEGFN--ISFPFNSFVIAMPRDSYIK------PLLVSFIDKETRAEQVNKL------GFNEDAAI--------LSVLYRD--DKNDVIKSVLKKN------------DVPKILDSKNFYDFQEKYTTANIQDSKLKSCEHMFNAVKFACSLMIYHSACGG--MMEGFPEWDRVRFP---KHSKKIDYSGHVIVDTISNDDCLDVVNVKP-HFRNLKDPRFYTGIYSDIEPGSRWTLVSE 283          
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: hypothetical (protein n=1 Tax=Vibrio furnissii TaxID=29494 RepID=UPI001EEAC56B)

HSP 1 Score: 60.8 bits (146), Expect = 9.320e-7
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 1
Query:  661 QKDSSALAMDMSHSDLYIQM----------VLMRLIVGLSVYISAAGESVLSDGIPKVTG--IPTPGLDKHSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGKYKATTVHDEE 1053
            +K ++ L +    SD+Y Q           + MR+ V L ++ +A     L DG P+ +   +P   +  + K +      PS    AS +     R  HFRNLRADRYY G+YA+  KGSRWT+VSE+ +G  +  T + E+
Sbjct:  182 EKITNGLELSKELSDIYDQSLNDKEQLQTNIQMRIAVQLLIFNAATENKYLVDGFPEQSKFQLPVNTIKTYWKASHFNY-KPSNQSIASHI-----RSAHFRNLRADRYYTGEYANLEKGSRWTLVSESFIGGNETYTQNIED 318          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Uncharacterized5.450e-24899.15protein n=1 Tax=Ostreococcus tauri TaxID=70448 Rep... [more]
Uncharacterized1.630e-1629.31protein n=1 Tax=Pseudomonas putida TaxID=303 RepID... [more]
Uncharacterized1.030e-1527.19protein n=1 Tax=Pseudomonas putida TaxID=303 RepID... [more]
Uncharacterized3.900e-927.21protein n=2 Tax=Pseudomonas sp. Leaf58 TaxID=17362... [more]
Uncharacterized8.570e-925.89protein n=2 Tax=Pseudomonas sp. FFUP_PS_41 TaxID=2... [more]
Uncharacterized1.230e-826.47protein n=1 Tax=Pseudomonas putida TaxID=303 RepID... [more]
Uncharacterized2.140e-825.42protein n=4 Tax=Pseudomonas TaxID=286 RepID=A0A241... [more]
hypothetical7.310e-824.19protein n=1 Tax=Vibrio crassostreae TaxID=246167 R... [more]
hypothetical1.310e-726.62protein n=1 Tax=Shewanella sp. KX20019 TaxID=28038... [more]
hypothetical9.320e-733.57protein n=1 Tax=Vibrio furnissii TaxID=29494 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1contigEcto-sp9_F_contig1:84690..85751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1062
Cds size1062
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928188.0726368-CDS-Ecto-sp9_F_contig1:84689..857511622928188.0726368-CDS-Ecto-sp9_F_contig1:84689..85751Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 84690..85751 +
1692277785.3581374-CDS-Ecto-sp9_F_contig1:84689..857511692277785.3581374-CDS-Ecto-sp9_F_contig1:84689..85751Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 84690..85751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1.23.1prot_Ecto-sp9_F_contig1.23.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1 84690..85751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1.23.1

>prot_Ecto-sp9_F_contig1.23.1 ID=prot_Ecto-sp9_F_contig1.23.1|Name=mRNA_Ecto-sp9_F_contig1.23.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=354bp
MASSPFQMFDLLSRQVRRGIKAQQSPLTMSHSSKSLKQLAKGPNENLLKE
FYKVLPGVSEILQQLVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPE
GENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVE
RVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADV
LKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLS
VYISAAGESVLSDGIPKVTGIPTPGLDKHSKPTMRRIPAPSQTRNASTMD
TPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGKYKATTVHDE
ETD*
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mRNA from alignment at Ecto-sp9_F_contig1:84690..85751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1.23.1 ID=mRNA_Ecto-sp9_F_contig1.23.1|Name=mRNA_Ecto-sp9_F_contig1.23.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1062bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:84690..85751+ (Ectocarpus species9 EcSCA_722f female)
ATGGCAAGTTCGCCGTTTCAAATGTTCGACCTGCTTTCGAGGCAGGTTCG TCGTGGCATCAAGGCACAGCAATCGCCACTCACAATGAGCCATTCCAGCA AGTCTCTTAAGCAGCTCGCGAAGGGGCCGAACGAGAATCTGCTCAAAGAA TTTTACAAGGTGCTACCCGGTGTTTCGGAAATCCTGCAGCAGCTGGTTGT TGCCGAGACAGATTGGAACCTCAGCGGCAGGAATATCCTGTTTCCCGGTT CCGAGGACTTCTATTCTCGTTTGCTGACTTCGCGATTCATGATCCCTGAA GGCGAAAATGCTCAGCTCAATTTCCCCAGTGCGGCATTCATCCTCGCGGT GCCCCGGGACATGACCGTTAACGGTTACAAGATCCCTTCTCCAATGGTGA CCTACTCAAACACGCGAGACGAGCGGATCGAGCAATATCGCCGTGTTGAG CGTGTCCTGAACTCAGGGGTCTCTGAGGAAGAGTTCCTCAGGCATGAAAC GATGTATTCCTGTGTGTCCATCTTTTTTCACAATCCTCAGGATGAGAGCG ATACAACCACGACCAAACTGACCCTGAATCTCAGCCAGCTGGCGGACGTG CTGAAGATCGATATGGACGCGCCGGACTGCCTCAGTCATTTTGAGCAGAT CGCCGCCCGTCAAAAAGACAGTAGCGCTTTGGCAATGGATATGAGCCACA GTGATCTGTATATCCAAATGGTTCTCATGAGGCTGATTGTCGGCCTTTCG GTCTACATCAGCGCTGCTGGTGAGAGCGTTCTCAGCGACGGGATTCCTAA GGTCACAGGTATTCCGACTCCGGGCCTCGATAAACACTCAAAGCCAACCA TGCGCCGGATACCGGCGCCTTCGCAAACCCGCAACGCATCCACAATGGAC ACTCCTACCACCCGGCGCTGGCACTTCCGGAACCTTCGGGCGGATCGGTA CTATCAGGGCGATTATGCGTCATGGCCCAAGGGGTCGCGCTGGACCATCG TCAGTGAAGCTCAGGTTGGCAAATACAAGGCCACTACGGTTCACGACGAG GAAACTGACTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1:84690..85751+

>mRNA_Ecto-sp9_F_contig1.23.1 ID=mRNA_Ecto-sp9_F_contig1.23.1|Name=mRNA_Ecto-sp9_F_contig1.23.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2124bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:84690..85751+ (Ectocarpus species9 EcSCA_722f female)
ATGGCAAGTTCGCCGTTTCAAATGTTCGACCTGCTTTCGAGGCAGGTTCG
TCGTGGCATCAAGGCACAGCAATCGCCACTCACAATGAGCCATTCCAGCA
AGTCTCTTAAGCAGCTCGCGAAGGGGCCGAACGAGAATCTGCTCAAAGAA
TTTTACAAGGTGCTACCCGGTGTTTCGGAAATCCTGCAGCAGCTGGTTGT
TGCCGAGACAGATTGGAACCTCAGCGGCAGGAATATCCTGTTTCCCGGTT
CCGAGGACTTCTATTCTCGTTTGCTGACTTCGCGATTCATGATCCCTGAA
GGCGAAAATGCTCAGCTCAATTTCCCCAGTGCGGCATTCATCCTCGCGGT
GCCCCGGGACATGACCGTTAACGGTTACAAGATCCCTTCTCCAATGGTGA
CCTACTCAAACACGCGAGACGAGCGGATCGAGCAATATCGCCGTGTTGAG
CGTGTCCTGAACTCAGGGGTCTCTGAGGAAGAGTTCCTCAGGCATGAAAC
GATGTATTCCTGTGTGTCCATCTTTTTTCACAATCCTCAGGATGAGAGCG
ATACAACCACGACCAAACTGACCCTGAATCTCAGCCAGCTGGCGGACGTG
CTGAAGATCGATATGGACGCGCCGGACTGCCTCAGTCATTTTGAGCAGAT
CGCCGCCCGTCAAAAAGACAGTAGCGCTTTGGCAATGGATATGAGCCACA
GTGATCTGTATATCCAAATGGTTCTCATGAGGCTGATTGTCGGCCTTTCG
GTCTACATCAGCGCTGCTGGTGAGAGCGTTCTCAGCGACGGGATTCCTAA
GGTCACAGGTATTCCGACTCCGGGCCTCGATAAACACTCAAAGCCAACCA
TGCGCCGGATACCGGCGCCTTCGCAAACCCGCAACGCATCCACAATGGAC
ACTCCTACCACCCGGCGCTGGCACTTCCGGAACCTTCGGGCGGATCGGTA
CTATCAGGGCGATTATGCGTCATGGCCCAAGGGGTCGCGCTGGACCATCG
TCAGTGAAGCTCAGGTTGGCAAATACAAGGCCACTACGGTTCACGACGAG
GAAACTGACTAAATGGCAAGTTCGCCGTTTCAAATGTTCGACCTGCTTTC
GAGGCAGGTTCGTCGTGGCATCAAGGCACAGCAATCGCCACTCACAATGA
GCCATTCCAGCAAGTCTCTTAAGCAGCTCGCGAAGGGGCCGAACGAGAAT
CTGCTCAAAGAATTTTACAAGGTGCTACCCGGTGTTTCGGAAATCCTGCA
GCAGCTGGTTGTTGCCGAGACAGATTGGAACCTCAGCGGCAGGAATATCC
TGTTTCCCGGTTCCGAGGACTTCTATTCTCGTTTGCTGACTTCGCGATTC
ATGATCCCTGAAGGCGAAAATGCTCAGCTCAATTTCCCCAGTGCGGCATT
CATCCTCGCGGTGCCCCGGGACATGACCGTTAACGGTTACAAGATCCCTT
CTCCAATGGTGACCTACTCAAACACGCGAGACGAGCGGATCGAGCAATAT
CGCCGTGTTGAGCGTGTCCTGAACTCAGGGGTCTCTGAGGAAGAGTTCCT
CAGGCATGAAACGATGTATTCCTGTGTGTCCATCTTTTTTCACAATCCTC
AGGATGAGAGCGATACAACCACGACCAAACTGACCCTGAATCTCAGCCAG
CTGGCGGACGTGCTGAAGATCGATATGGACGCGCCGGACTGCCTCAGTCA
TTTTGAGCAGATCGCCGCCCGTCAAAAAGACAGTAGCGCTTTGGCAATGG
ATATGAGCCACAGTGATCTGTATATCCAAATGGTTCTCATGAGGCTGATT
GTCGGCCTTTCGGTCTACATCAGCGCTGCTGGTGAGAGCGTTCTCAGCGA
CGGGATTCCTAAGGTCACAGGTATTCCGACTCCGGGCCTCGATAAACACT
CAAAGCCAACCATGCGCCGGATACCGGCGCCTTCGCAAACCCGCAACGCA
TCCACAATGGACACTCCTACCACCCGGCGCTGGCACTTCCGGAACCTTCG
GGCGGATCGGTACTATCAGGGCGATTATGCGTCATGGCCCAAGGGGTCGC
GCTGGACCATCGTCAGTGAAGCTCAGGTTGGCAAATACAAGGCCACTACG
GTTCACGACGAGGAAACTGACTAA
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