mRNA_Ecto-sp9_F_contig1019.220.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1019.220.1
Unique NamemRNA_Ecto-sp9_F_contig1019.220.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1019.220.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1019contigEcto-sp9_F_contig1019:13117..13295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size159
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928214.1525867-CDS-Ecto-sp9_F_contig1019:13116..131951622928214.1525867-CDS-Ecto-sp9_F_contig1019:13116..13195Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 13117..13195 -
1692277797.95323-CDS-Ecto-sp9_F_contig1019:13116..131951692277797.95323-CDS-Ecto-sp9_F_contig1019:13116..13195Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 13117..13195 -
1622928214.174921-CDS-Ecto-sp9_F_contig1019:13215..132951622928214.174921-CDS-Ecto-sp9_F_contig1019:13215..13295Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 13216..13295 -
1692277797.9622133-CDS-Ecto-sp9_F_contig1019:13215..132951692277797.9622133-CDS-Ecto-sp9_F_contig1019:13215..13295Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 13216..13295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1019.220.1prot_Ecto-sp9_F_contig1019.220.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1019 13117..13295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1019.220.1

>prot_Ecto-sp9_F_contig1019.220.1 ID=prot_Ecto-sp9_F_contig1019.220.1|Name=mRNA_Ecto-sp9_F_contig1019.220.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=53bp
MDTMVTADGPLSYCLLYFVLMRRVGFKNDVFFLVVFSLLSFHIHGWTLLS
IQT
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mRNA from alignment at Ecto-sp9_F_contig1019:13117..13295-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1019.220.1 ID=mRNA_Ecto-sp9_F_contig1019.220.1|Name=mRNA_Ecto-sp9_F_contig1019.220.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=179bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1019:13117..13295- (Ectocarpus species9 EcSCA_722f female)
ATGGATACCATGGTCACGGCCGACGGCCCCCTGTCTTACTGCCTACTATA
TTTTGTACTCATGCGTCGAGTGGGTTTTAAGTCATAATTTAAACGGGGAG
AAATGATGTTTTTTTCCTTGTTGTTTTTTCCCTTCTTTCATTTCACATCC
ATGGGTGGACTCTCTTATCCATCCAGACT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1019:13117..13295-

>mRNA_Ecto-sp9_F_contig1019.220.1 ID=mRNA_Ecto-sp9_F_contig1019.220.1|Name=mRNA_Ecto-sp9_F_contig1019.220.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1019:13117..13295- (Ectocarpus species9 EcSCA_722f female)
ATGGATACCATGGTCACGGCCGACGGCCCCCTGTCTTACTGCCTACTATA
TTTTGTACTCATGCGTCGAGTGGGTTTTAAATGGATACCATGGTCACGGC
CGACGGCCCCCTGTCTTACTGCCTACTATATTTTGTACTCATGCGTCGAG
TGGGTTTTAAAAATGATGTTTTTTTCCTTGTTGTTTTTTCCCTTCTTTCA
TTTCACATCCATGGGTGGACTCTCTTATCCATCCAGACTAAATGATGTTT
TTTTCCTTGTTGTTTTTTCCCTTCTTTCATTTCACATCCATGGGTGGACT
CTCTTATCCATCCAGACT
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