mRNA_Ecto-sp9_F_contig9952.18018.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9952.18018.1
Unique NamemRNA_Ecto-sp9_F_contig9952.18018.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9952.18018.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y7_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 7.440e-37
Identity = 68/101 (67.33%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 VGGDSNTISGMAWSPRG-------------------------------CAWDGGCLLCVVSCLHAVTVFQPPRDSPDGMEWEPLATVSSALLHWGLRLCPT 210
            VGGDSNTISGMAWSPRG                               CAWDGGCLLCVVSCLHAVTVFQPP+DSPDGMEWEPLATVSSALLHWGLR+CPT
Sbjct:   68 VGGDSNTISGMAWSPRGGSGVASRSRRWCWLVLVLIMGVVSVGDDEGGCAWDGGCLLCVVSCLHAVTVFQPPKDSPDGMEWEPLATVSSALLHWGLRVCPT 168
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BLAST of mRNA_Ecto-sp9_F_contig9952.18018.1 vs.
Match: TFIIIC_delta (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.050e-10
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   22 ISGMAWSPRGCAWDGGCLLCVVSCLHAVTVFQPPRDSPDGMEWEPLATVSSALLH 186
             +  AWSP GCAWDGGCLL ++  +H + V+ PPRD+     W PL ++S A L 
Sbjct:  168 FTAAAWSPVGCAWDGGCLLALLDNVHCLRVYAPPRDAAQ-FSWSPLLSISDAALR 221
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BLAST of mRNA_Ecto-sp9_F_contig9952.18018.1 vs.
Match: TFIIIC_delta (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTE4_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 6.360e-5
Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:   13 SNTISGMAWSPRGCAWDGGCLLCVVSCLHAVTVFQPPRDS 132
            S    G+ WSPR CAW+GGCLL  +S    V V++PPR +
Sbjct:  116 SPMFCGLDWSPRACAWEGGCLLATLSTDARVEVWEPPRST 155
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9952.18018.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized7.440e-3767.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
TFIIIC_delta6.050e-1047.27domain-containing protein n=1 Tax=Tribonema minus ... [more]
TFIIIC_delta6.360e-550.00domain-containing protein n=1 Tax=Nannochloropsis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9952contigEcto-sp9_F_contig9952:623..1368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size213
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9952.18018.1prot_Ecto-sp9_F_contig9952.18018.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9952 623..1338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.8976588-CDS-Ecto-sp9_F_contig9952:622..7861622931091.8976588-CDS-Ecto-sp9_F_contig9952:622..786Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9952 623..786 -
1692279029.4263005-CDS-Ecto-sp9_F_contig9952:622..7861692279029.4263005-CDS-Ecto-sp9_F_contig9952:622..786Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9952 623..786 -
1622931091.9148479-CDS-Ecto-sp9_F_contig9952:1319..13381622931091.9148479-CDS-Ecto-sp9_F_contig9952:1319..1338Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9952 1320..1338 -
1692279029.4365819-CDS-Ecto-sp9_F_contig9952:1319..13381692279029.4365819-CDS-Ecto-sp9_F_contig9952:1319..1338Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9952 1320..1338 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.9328399-UTR-Ecto-sp9_F_contig9952:1338..13681622931091.9328399-UTR-Ecto-sp9_F_contig9952:1338..1368Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9952 1339..1368 -
1692279029.4472852-UTR-Ecto-sp9_F_contig9952:1338..13681692279029.4472852-UTR-Ecto-sp9_F_contig9952:1338..1368Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9952 1339..1368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9952.18018.1

>prot_Ecto-sp9_F_contig9952.18018.1 ID=prot_Ecto-sp9_F_contig9952.18018.1|Name=mRNA_Ecto-sp9_F_contig9952.18018.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=61bp
MAWSPRGCAWDGGCLLCVVSCLHAVTVFQPPRDSPDGMEWEPLATVSSAL
LHWGLRLCPT*
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mRNA from alignment at Ecto-sp9_F_contig9952:623..1368-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9952.18018.1 ID=mRNA_Ecto-sp9_F_contig9952.18018.1|Name=mRNA_Ecto-sp9_F_contig9952.18018.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=746bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9952:623..1368- (Ectocarpus species9 EcSCA_722f female)
GTTGGAGGGGACTCGAACACCATCTCCGGCATGGCCTGGTCCCCCAGGGG
TGGGTCTGGTGTTGCCTGTCGGTGTCGGCGTTGGCGTTGGTTGGTGCTAG
TGCTGATGATGGTGGTAGTGCTGGTGTTGGCGATGATGAGAGGGTGGTGA
GGGTGGCGGTGTTGATGTTGTTAATGGTGTTGGTACGTTGGCCATCCGTT
GCCTGTGTCCCGGTTGATCATCTGCATCCACAAAAAAGTGGAATTTGGTG
CGAAAACCACCCCTCGCCCACCCCCCTGCCTCAGGAATGAAGTGGAATAT
CCCTCCCTCGCCTTTCTTGCTGGGTCGACAAACCCAGCGCCCCCCCCCTA
TGGAGTACGAATACGCCGAGTACGAATACGCCGCATTTTGGACCGGTTGA
CTGCCATCGTCGTCATCGATATCTCGTGATCCGGCGTGTTGGATGCTGGC
CCCCCTCCCCCTGAATTTTCGCGGATGCCCGCGCCGCTTGATAACGCCTT
TGCCTATTCCGACATTACCACCTTTCGTACCTGTTGTTGTTGTTGCTGCT
TGCTGTTTGCTGTTTGATGATGTTATGTACAGGCTGCGCGTGGGATGGCG
GGTGCCTTCTTTGTGTGGTGTCTTGCCTGCATGCCGTGACGGTCTTTCAG
CCGCCGAGAGACTCGCCCGATGGCATGGAGTGGGAGCCCCTGGCGACGGT
GTCGTCCGCCCTGCTCCACTGGGGGCTGCGATTATGCCCCACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9952:623..1368-

>mRNA_Ecto-sp9_F_contig9952.18018.1 ID=mRNA_Ecto-sp9_F_contig9952.18018.1|Name=mRNA_Ecto-sp9_F_contig9952.18018.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9952:623..1368- (Ectocarpus species9 EcSCA_722f female)
ATGGCCTGGTCCCCCAGGGATGGCCTGGTCCCCCAGGGGCTGCGCGTGGG
ATGGCGGGTGCCTTCTTTGTGTGGTGTCTTGCCTGCATGCCGTGACGGTC
TTTCAGCCGCCGAGAGACTCGCCCGATGGCATGGAGTGGGAGCCCCTGGC
GACGGTGTCGTCCGCCCTGCTCCACTGGGGGCTGCGATTATGCCCCACGT
GAGCTGCGCGTGGGATGGCGGGTGCCTTCTTTGTGTGGTGTCTTGCCTGC
ATGCCGTGACGGTCTTTCAGCCGCCGAGAGACTCGCCCGATGGCATGGAG
TGGGAGCCCCTGGCGACGGTGTCGTCCGCCCTGCTCCACTGGGGGCTGCG
ATTATGCCCCACGTGA
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